jgi.p|Nanoce1779_2|595319, mRNA_7024 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595319
Unique Name	mRNA_7024
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	697
Alignment location	scaffold_16:80452..82331 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595405
Track	FilteredModels2
ProteinId	595319

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:80452..82331 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595319	gene_7024	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595319	mRNA_7024-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7024	CDS_7024	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:80452..82331+
coding sequence from alignment at scaffold_16:80452..82331+

mRNA sequence

>mRNA_7024 ID=mRNA_7024|Name=jgi.p|Nanoce1779_2|595319|organism=Nannochloropsis oceanica|type=mRNA|length=697bp
CCCTCGACCAACGACGTCATATTCCCCGAGATGTGGCGGCCGTTTGATTC
CTCTAAAACATGGCCCATGTGCATTTTCTACCGCAACCCTGACCTCGACC
CGGAGATCTACAGGGCCTGTCGCTCCGACTCGCATAGCACGTATGGCGAA
CACACCTCCCCGCGGCAGGATGACCCTACCTGGCCATCCATCCTCCAAGA
GGGTTTCGTCCGTCGCGTCAAGAGCTACGTGGAGCAGCACAAGGACGACT
TCAATCTCGGCGACAAGATCGCCTTCTCCATTCAAGCTTTATGGTATGAC
CAGAAAACCCGCAAAGCCGAACACAAAGATCCCAAGGCCTACACTATCAT
CAGTGCCCTCAACGTCCAGGGCGAGGCCGACCTCCAGCTCTACGACTGCA
AGCTCCGCAAGAGGCATCAGTCAGCCCTCCTTCCTGAGGGCTCGGTCTAT
GTGATGCATAACGAGGCCGTGACCCGCCTCGACCACGCCGTCTCCGCTCC
TCATGCTTCTTTCAAGGACAATCGCGTCACTGTTGTTCTTCGCTTCATTG
ACCGCTCTTCCTACTCCCGCCTCTGTAAGGACGTACGCCGGCGCCAGCGA
CGGCTCCAGCGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAATTGACG
GAGGGAGGGAGGGATGAAGAAAGAGCTTGCTGGTCTGGCCATCCCTC

protein sequence of jgi.p|Nanoce1779_2|595319

>mRNA_7024-protein ID=mRNA_7024-protein|Name=jgi.p|Nanoce1779_2|595319|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MWRPFDSSKTWPMCIFYRNPDLDPEIYRACRSDSHSTYGEHTSPRQDDPT
WPSILQEGFVRRVKSYVEQHKDDFNLGDKIAFSIQALWYDQKTRKAEHKD
PKAYTIISALNVQGEADLQLYDCKLRKRHQSALLPEGSVYVMHNEAVTRL
DHAVSAPHASFKDNRVTVVLRFIDRSSYSRLCKDVRRRQRRLQRKREGGR
EGGRN*

mRNA from alignment at scaffold_16:80452..82331+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7024 ID=mRNA_7024|Name=jgi.p|Nanoce1779_2|595319|organism=Nannochloropsis oceanica|type=mRNA|length=1880bp|location=Sequence derived from alignment at scaffold_16:80452..82331+ (Nannochloropsis oceanica)
CCCTCGACCAACGACGTCATATTCCCCGAGATGTGGCGGCCGTTTGATTC
CTCTAAAACATGGCCCATGTGCATTTTCTACCGCAACCCTGGTACGTCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCATTT
CTTTTTCCTCCTTGTCTCCTGTCTTCTCCCCTCATCCCCCCTCCCTCCCT
CCCTCCCTCCATTTCTTTTCCCTCCTTGTCTCCTGTCTTCTCCCCTCATC
CCCCCTCCCTCCCTCCCTCCCTCCATCTCTTTTTCCTCCTTGTCTCCTGT
CTTCTCCCCTCATCCCCCCCCTCCCTCCCTCCCTCCCACAGACCTCGACC
CGGAGATCTACAGGGCCTGTCGCTCCGACTCGCATAGCACGTATGGCGAA
CACACCTCCCCGCGGCAGGTAGTGAAGGAGGGCGGGAGGGAGGGAGGGAA
GGAGGGCGGGAGGGAGAACTCCTTCGAGATGCCGGCGCTATTTTGTGACT
TATCATGCCTGTCTATTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCATCTCTTGCCCCCCCCCGAGTCATCTTTCTCCCTGAGGGCACTGTATT
TCCTGACTTCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGATGACCCTACCTGGCCATC
CATCCTCCAAGAGGGTTTCGTCCGTCGCGTCAAGAGCTACGTGGAGCAGC
ACAAGGACGACTTCAATCTCGGTACCCTCCTCCCTCCCTCCCTCCCTCTC
CCACCTCCCCTCCCTTTATATTTCCTTCACCTGCTCTCTGTTCAAACTCG
CCTTTCTCACCCTCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCTCCCTC
CCTCCCTCCTTCTCCCCCCCCGTCAGGCGACAAGATCGCCTTCTCCATTC
AAGCTTTATGGTATGACCAGAAAACCCGCAAAGCCGAACACAAAGATCCC
AAGGCCTACACTATCATCAGTGCCCTCAACGTCCAGGTACGCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCTTTCCTCCCTTTTGCTG
GATCGAGCCCGATCGACCGCTCTTCGTGTGCAAATTTTCCTCGACACACT
CACCTTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAGGGC
GAGGCCGACCTCCAGCTCTACGACTGCAAGCTCCGCAAGAGGCATCAGTC
AGCCCTCCTTCCTGGTACGACTAAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACG
GGGACGGGGGCGGAAAGCCCTGGTCGAAAACTACGTTCTTAATTATAGTC
CTCCCCCTCCCTTCCTCTTCCTCACCTCCTCCTTTTCTCCTTCCCTCCCT
CCCTGGCCTTATGCTTATGATTCAGAGGGCTCGGTCTATGTGATGCATAA
CGAGGCCGTGACCCGCCTCGACCACGCCGTCTCCGCTCCTCATGCTTCTT
TCAAGGTACGTCCTGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGGCA
ATCGCACCACTCTCGTTCTTCGCTTTATCGACCGCTCTTCCTACTCCCGC
TTCTGATAAGTTATCCATCTCACGCCTCCCTCCCTCCCTCCCTCCCAAGG
ACAATCGCGTCACTGTTGTTCTTCGCTTCATTGACCGCTCTTCCTACTCC
CGCCTCTGTAAGGACGTACGCCGGCGCCAGCGACGGCTCCAGCGGAAGAG
GGAGGGAGGGAGGGAGGGAGGGAGGAATTGACGGAGGGAGGGAGGGATGA
AGAAAGAGCTTGCTGGTCTGGCCATCCCTC

Coding sequence (CDS) from alignment at scaffold_16:80452..82331+

>mRNA_7024 ID=mRNA_7024|Name=jgi.p|Nanoce1779_2|595319|organism=Nannochloropsis oceanica|type=CDS|length=4326bp|location=Sequence derived from alignment at scaffold_16:80452..82331+ (Nannochloropsis oceanica)
ATGTGGCGGCCGTTTGATTCCTCTAAAACATGGCCCATGTGCATTTTCTA
CCGCAACCCTGACCTCGACCCGGAGATCTACAGGGCCTGTCGCTCCGACT
CGCATAGCACGTATGGCGAACACACCTCCCCGCGGCAGGATGACCCTACC
TGGCCATCCATCCTCCAAGAGGGTTTCGTCCGTCGCGTCAAGAGCTACGT
GGAGCAGCACAAGGACGACTTCAATCTCGGCGACAAGATCGCCTTCTCCA
TTCAAGCTTTATGGTATGACCAGAAAACCCGCAAAGCCGAACACAAAGAT
CCCAAGGCCTACACTATCATCAGTGCCCTCAACGTCCAGGGCGAGGCCGA
CCTCCAGCTCTACGACTGCAAGCTCCGCAAGAGGCATCAGTCAGCCCTCC
TTCCTGAGGGCTCGGTCTATGTGATGCATAACGAGGCCGTGACCCGCCTC
GACCACGCCGTCTCCGCTCCTCATGCTTCTTTCAAGGACAATCGCGTCAC
TGTTGTTCTTCGCTTCATTGACCGCTCTTCCTACTCCCGCCTCTGTAAGG
ACGTACGCCGGCGCCAGCGACGGCTCCAGCGGAAGAGGGAGGGAGGGAGG
GAGGGAGGGAGGAATTGAATGTGGCGGCCGTTTGATTCCTCTAAAACATG
GCCCATGTGCATTTTCTACCGCAACCCTGACCTCGACCCGGAGATCTACA
GGGCCTGTCGCTCCGACTCGCATAGCACGTATGGCGAACACACCTCCCCG
CGGCAGGATGACCCTACCTGGCCATCCATCCTCCAAGAGGGTTTCGTCCG
TCGCGTCAAGAGCTACGTGGAGCAGCACAAGGACGACTTCAATCTCGGCG
ACAAGATCGCCTTCTCCATTCAAGCTTTATGGTATGACCAGAAAACCCGC
AAAGCCGAACACAAAGATCCCAAGGCCTACACTATCATCAGTGCCCTCAA
CGTCCAGGGCGAGGCCGACCTCCAGCTCTACGACTGCAAGCTCCGCAAGA
GGCATCAGTCAGCCCTCCTTCCTGAGGGCTCGGTCTATGTGATGCATAAC
GAGGCCGTGACCCGCCTCGACCACGCCGTCTCCGCTCCTCATGCTTCTTT
CAAGGACAATCGCGTCACTGTTGTTCTTCGCTTCATTGACCGCTCTTCCT
ACTCCCGCCTCTGTAAGGACGTACGCCGGCGCCAGCGACGGCTCCAGCGG
AAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAATTGAATGTGGCGGCCGTT
TGATTCCTCTAAAACATGGCCCATGTGCATTTTCTACCGCAACCCTGACC
TCGACCCGGAGATCTACAGGGCCTGTCGCTCCGACTCGCATAGCACGTAT
GGCGAACACACCTCCCCGCGGCAGGATGACCCTACCTGGCCATCCATCCT
CCAAGAGGGTTTCGTCCGTCGCGTCAAGAGCTACGTGGAGCAGCACAAGG
ACGACTTCAATCTCGGCGACAAGATCGCCTTCTCCATTCAAGCTTTATGG
TATGACCAGAAAACCCGCAAAGCCGAACACAAAGATCCCAAGGCCTACAC
TATCATCAGTGCCCTCAACGTCCAGGGCGAGGCCGACCTCCAGCTCTACG
ACTGCAAGCTCCGCAAGAGGCATCAGTCAGCCCTCCTTCCTGAGGGCTCG
GTCTATGTGATGCATAACGAGGCCGTGACCCGCCTCGACCACGCCGTCTC
CGCTCCTCATGCTTCTTTCAAGGACAATCGCGTCACTGTTGTTCTTCGCT
TCATTGACCGCTCTTCCTACTCCCGCCTCTGTAAGGACGTACGCCGGCGC
CAGCGACGGCTCCAGCGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAA
TTGAATGTGGCGGCCGTTTGATTCCTCTAAAACATGGCCCATGTGCATTT
TCTACCGCAACCCTGACCTCGACCCGGAGATCTACAGGGCCTGTCGCTCC
GACTCGCATAGCACGTATGGCGAACACACCTCCCCGCGGCAGGATGACCC
TACCTGGCCATCCATCCTCCAAGAGGGTTTCGTCCGTCGCGTCAAGAGCT
ACGTGGAGCAGCACAAGGACGACTTCAATCTCGGCGACAAGATCGCCTTC
TCCATTCAAGCTTTATGGTATGACCAGAAAACCCGCAAAGCCGAACACAA
AGATCCCAAGGCCTACACTATCATCAGTGCCCTCAACGTCCAGGGCGAGG
CCGACCTCCAGCTCTACGACTGCAAGCTCCGCAAGAGGCATCAGTCAGCC
CTCCTTCCTGAGGGCTCGGTCTATGTGATGCATAACGAGGCCGTGACCCG
CCTCGACCACGCCGTCTCCGCTCCTCATGCTTCTTTCAAGGACAATCGCG
TCACTGTTGTTCTTCGCTTCATTGACCGCTCTTCCTACTCCCGCCTCTGT
AAGGACGTACGCCGGCGCCAGCGACGGCTCCAGCGGAAGAGGGAGGGAGG
GAGGGAGGGAGGGAGGAATTGAATGTGGCGGCCGTTTGATTCCTCTAAAA
CATGGCCCATGTGCATTTTCTACCGCAACCCTGACCTCGACCCGGAGATC
TACAGGGCCTGTCGCTCCGACTCGCATAGCACGTATGGCGAACACACCTC
CCCGCGGCAGGATGACCCTACCTGGCCATCCATCCTCCAAGAGGGTTTCG
TCCGTCGCGTCAAGAGCTACGTGGAGCAGCACAAGGACGACTTCAATCTC
GGCGACAAGATCGCCTTCTCCATTCAAGCTTTATGGTATGACCAGAAAAC
CCGCAAAGCCGAACACAAAGATCCCAAGGCCTACACTATCATCAGTGCCC
TCAACGTCCAGGGCGAGGCCGACCTCCAGCTCTACGACTGCAAGCTCCGC
AAGAGGCATCAGTCAGCCCTCCTTCCTGAGGGCTCGGTCTATGTGATGCA
TAACGAGGCCGTGACCCGCCTCGACCACGCCGTCTCCGCTCCTCATGCTT
CTTTCAAGGACAATCGCGTCACTGTTGTTCTTCGCTTCATTGACCGCTCT
TCCTACTCCCGCCTCTGTAAGGACGTACGCCGGCGCCAGCGACGGCTCCA
GCGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGAATTGAATGTGGCGGC
CGTTTGATTCCTCTAAAACATGGCCCATGTGCATTTTCTACCGCAACCCT
GACCTCGACCCGGAGATCTACAGGGCCTGTCGCTCCGACTCGCATAGCAC
GTATGGCGAACACACCTCCCCGCGGCAGGATGACCCTACCTGGCCATCCA
TCCTCCAAGAGGGTTTCGTCCGTCGCGTCAAGAGCTACGTGGAGCAGCAC
AAGGACGACTTCAATCTCGGCGACAAGATCGCCTTCTCCATTCAAGCTTT
ATGGTATGACCAGAAAACCCGCAAAGCCGAACACAAAGATCCCAAGGCCT
ACACTATCATCAGTGCCCTCAACGTCCAGGGCGAGGCCGACCTCCAGCTC
TACGACTGCAAGCTCCGCAAGAGGCATCAGTCAGCCCTCCTTCCTGAGGG
CTCGGTCTATGTGATGCATAACGAGGCCGTGACCCGCCTCGACCACGCCG
TCTCCGCTCCTCATGCTTCTTTCAAGGACAATCGCGTCACTGTTGTTCTT
CGCTTCATTGACCGCTCTTCCTACTCCCGCCTCTGTAAGGACGTACGCCG
GCGCCAGCGACGGCTCCAGCGGAAGAGGGAGGGAGGGAGGGAGGGAGGGA
GGAATTGAATGTGGCGGCCGTTTGATTCCTCTAAAACATGGCCCATGTGC
ATTTTCTACCGCAACCCTGACCTCGACCCGGAGATCTACAGGGCCTGTCG
CTCCGACTCGCATAGCACGTATGGCGAACACACCTCCCCGCGGCAGGATG
ACCCTACCTGGCCATCCATCCTCCAAGAGGGTTTCGTCCGTCGCGTCAAG
AGCTACGTGGAGCAGCACAAGGACGACTTCAATCTCGGCGACAAGATCGC
CTTCTCCATTCAAGCTTTATGGTATGACCAGAAAACCCGCAAAGCCGAAC
ACAAAGATCCCAAGGCCTACACTATCATCAGTGCCCTCAACGTCCAGGGC
GAGGCCGACCTCCAGCTCTACGACTGCAAGCTCCGCAAGAGGCATCAGTC
AGCCCTCCTTCCTGAGGGCTCGGTCTATGTGATGCATAACGAGGCCGTGA
CCCGCCTCGACCACGCCGTCTCCGCTCCTCATGCTTCTTTCAAGGACAAT
CGCGTCACTGTTGTTCTTCGCTTCATTGACCGCTCTTCCTACTCCCGCCT
CTGTAAGGACGTACGCCGGCGCCAGCGACGGCTCCAGCGGAAGAGGGAGG
GAGGGAGGGAGGGAGGGAGGAATTGA

Synonyms

Publications