jgi.p|Nanoce1779_2|595313, mRNA_7022 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595313
Unique NamemRNA_7022
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length512
Alignment locationscaffold_16:75918..77223 -

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Properties
Property NameValue
TranscriptId595399
TrackFilteredModels2
ProteinId595313
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:75918..77223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595313gene_7022Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595313mRNA_7022-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7022CDS_7022Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7022 ID=mRNA_7022|Name=jgi.p|Nanoce1779_2|595313|organism=Nannochloropsis oceanica|type=mRNA|length=512bp
CAGATCTCCTTATCATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCAC
AGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCC
CAAAGACGTGGATCAGATTCAGGACGAGCTACGGAAAGAAGTTGAACTTG
GCGCCCCCCTCCCCCTTCCCTACGACGATGATCTACCCGGTGGAGGTCAA
TTTTACTGCCGGCCTTGTGCGCGCCACTTCGGAGATCAGCATTGCCTCGA
TCACCACATTAAGAGCAAGGTCCACAAGCGAAGGATGAAAGATGTTGCCC
AAGAGCAGTATAGTCAAGGAGAGGCTGAGTATGCAGCTGGAATGACGAAA
GAGGTCCTACCACCCGCGCACTCGGCAGGGCTGATGGTCGGCTAGGGGCC
TGGATCGAGACGCAGGGATGAAAGAGAGGGAGAAGAGAGCCAGGAGGAGG
GGGAGAAAGGGTGGGAAGAAGGCGGAGGAGAATGTGGTTGAAAATACATG
GTCAGAAATAGG
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protein sequence of jgi.p|Nanoce1779_2|595313

>mRNA_7022-protein ID=mRNA_7022-protein|Name=jgi.p|Nanoce1779_2|595313|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MGTGMCGKKPRHSAKKKQYKKALCTARRPKDVDQIQDELRKEVELGAPLP
LPYDDDLPGGGQFYCRPCARHFGDQHCLDHHIKSKVHKRRMKDVAQEQYS
QGEAEYAAGMTKEVLPPAHSAGLMVG*
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mRNA from alignment at scaffold_16:75918..77223-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7022 ID=mRNA_7022|Name=jgi.p|Nanoce1779_2|595313|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at scaffold_16:75918..77223- (Nannochloropsis oceanica)
CAGATCTCCTTATCATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCAC
AGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCC
CAAAGACGTGGATCAGATTCAGGTAACTTGGAGGAAGGAGGGGAGGCATG
GGAGAGTGAGAGGCGGGCGGGGGGTGATAGGGATGTGCGGGCGGGTGAAA
TAGAACAGATATGACGGACGGCAGTTTTTAGACGTCAAAAGCCCGTAGTC
TTACGTTAGCAGGAAACGTAGGGACAGGAGGGAGGGAGGGTGGATGGTGG
AGAAACGGAGGTCGAGGCCCTTAACCCTTACGCTTTTTCAGTCGAAGGAG
TAAAAATCGACTTGACGCTCCTGGATCCGACGAAGGATAGCATGAGAGGT
TACAGGGGGAGGCTGCTGCCTCTGCGTAGACTAAGTATTGCCTTTCCTCC
TACCCGCCCCTCCTTCCCTCCCTTCCTCCCTTCCTTCCGCTTCAACAGGA
CGAGCTACGGAAAGAAGTTGAACTTGGCGCCCCCCTCCCCCTTCCCTACG
ACGATGATCTACCCGGTGGAGGTCAATTTTACTGCCGGCCTTGTGCGCGC
CACTTCGGAGATCAGCATTGCCTCGATCACCACATTAAGAGCAAGGTCCA
CAAGCGAAGGTAAGCCCTCTTCCTCCCACCCATCCTCCCTCCCTCCCTCC
CTCTTTCCCTCCCTCCCCCCCTTTCTCCCACTGACCTTCCCTCCCTCCAG
GATGAAAGATGTTGCCCAAGAGCAGTATAGTCAAGGAGAGGCTGAGTATG
CAGCTGGAATGACGAAAGAGGTCCTACCACCCGCGCACTCGGCAGGTAGG
GAGGGAGGGAGGGAGGGAGGAGTCTGGTCTCGCTACCGGGATAACCGTGA
ATGGGCCGCTTCCTGGATAGCCTGCGGGTACGAAAGGAGGGATGGAGTGA
GAGGCAAGGATTCGTCAGAAGTCACTGACTTTGATAAATTTTCAACCTAA
TTTTTGTTGAAATTTATAATAATTAAATTGTATCTATGTCTTCGCAGTCG
TCAGCGTCTTACCATAAAAAAGCCAATGACTAAATTGTCTCTACGTCTTC
GCAGTCGTCAGTGTCTTACTATGAAGAACAACAAGAATAATCACATTTTG
CACTCTTTCCATCGCTCGACAGGGCTGATGGTCGGCTAGGGGCCTGGATC
GAGACGCAGGGATGAAAGAGAGGGAGAAGAGAGCCAGGAGGAGGGGGAGA
AAGGGTGGGAAGAAGGCGGAGGAGAATGTGGTTGAAAATACATGGTCAGA
AATAGG
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Coding sequence (CDS) from alignment at scaffold_16:75918..77223-

>mRNA_7022 ID=mRNA_7022|Name=jgi.p|Nanoce1779_2|595313|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_16:75918..77223- (Nannochloropsis oceanica)
GGCTGATGGTCGGCTAGGATGAAAGATGTTGCCCAAGAGCAGTATAGTCA
AGGAGAGGCTGAGTATGCAGCTGGAATGACGAAAGAGGTCCTACCACCCG
CGCACTCGGCAGGACGAGCTACGGAAAGAAGTTGAACTTGGCGCCCCCCT
CCCCCTTCCCTACGACGATGATCTACCCGGTGGAGGTCAATTTTACTGCC
GGCCTTGTGCGCGCCACTTCGGAGATCAGCATTGCCTCGATCACCACATT
AAGAGCAAGGTCCACAAGCGAAGATGGGCACCGGTATGTGTGGCAAGAAG
CCGCGGCACAGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGC
CCGACGGCCCAAAGACGTGGATCAGATTCAGGGCTGATGGTCGGCTAGGA
TGAAAGATGTTGCCCAAGAGCAGTATAGTCAAGGAGAGGCTGAGTATGCA
GCTGGAATGACGAAAGAGGTCCTACCACCCGCGCACTCGGCAGGACGAGC
TACGGAAAGAAGTTGAACTTGGCGCCCCCCTCCCCCTTCCCTACGACGAT
GATCTACCCGGTGGAGGTCAATTTTACTGCCGGCCTTGTGCGCGCCACTT
CGGAGATCAGCATTGCCTCGATCACCACATTAAGAGCAAGGTCCACAAGC
GAAGATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGCACAGTGCCAAAA
AGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGGCCCAAAGACGTG
GATCAGATTCAGGGCTGATGGTCGGCTAGGATGAAAGATGTTGCCCAAGA
GCAGTATAGTCAAGGAGAGGCTGAGTATGCAGCTGGAATGACGAAAGAGG
TCCTACCACCCGCGCACTCGGCAGGACGAGCTACGGAAAGAAGTTGAACT
TGGCGCCCCCCTCCCCCTTCCCTACGACGATGATCTACCCGGTGGAGGTC
AATTTTACTGCCGGCCTTGTGCGCGCCACTTCGGAGATCAGCATTGCCTC
GATCACCACATTAAGAGCAAGGTCCACAAGCGAAGATGGGCACCGGTATG
TGTGGCAAGAAGCCGCGGCACAGTGCCAAAAAGAAGCAGTACAAGAAGGC
CTTGTGCACGGCCCGACGGCCCAAAGACGTGGATCAGATTCAGGGCTGAT
GGTCGGCTAGGATGAAAGATGTTGCCCAAGAGCAGTATAGTCAAGGAGAG
GCTGAGTATGCAGCTGGAATGACGAAAGAGGTCCTACCACCCGCGCACTC
GGCAGGACGAGCTACGGAAAGAAGTTGAACTTGGCGCCCCCCTCCCCCTT
CCCTACGACGATGATCTACCCGGTGGAGGTCAATTTTACTGCCGGCCTTG
TGCGCGCCACTTCGGAGATCAGCATTGCCTCGATCACCACATTAAGAGCA
AGGTCCACAAGCGAAGATGGGCACCGGTATGTGTGGCAAGAAGCCGCGGC
ACAGTGCCAAAAAGAAGCAGTACAAGAAGGCCTTGTGCACGGCCCGACGG
CCCAAAGACGTGGATCAGATTCAG
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Synonyms
Publications