jgi.p|Nanoce1779_2|595301, mRNA_7020 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595301
Unique NamemRNA_7020
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length467
Alignment locationscaffold_16:71044..71801 -

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Properties
Property NameValue
TranscriptId595387
TrackFilteredModels2
ProteinId595301
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:71044..71801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595301gene_7020Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595301mRNA_7020-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7020CDS_7020Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7020 ID=mRNA_7020|Name=jgi.p|Nanoce1779_2|595301|organism=Nannochloropsis oceanica|type=mRNA|length=467bp
AGTATTATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAAGCGCT
ACGACTGTACCGAGAGATATTACGTACCGCCCGTCGTTTCTACTGGCCTA
ACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCCGGAAG
GAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCGAGGTT
GCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGTTCGACA
TGGCCCAGATGAAGATCAAGGAGAATGTGGACAAGACACGGACACGCGAT
AAGAGATAAGGCATTCGCTTCCCAACTTGATACAAAAGATGCTACGTGAA
AATAAACTGATTCAATAAGTCTCTCATTTTTTAGCAGCAAAGGTTGACGC
GTGTACAAGAAGGAGGATTTTGTACATAGAAAGAACGGAGAAAGTGACAT
TCATAACGGCTTGAGTC
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protein sequence of jgi.p|Nanoce1779_2|595301

>mRNA_7020-protein ID=mRNA_7020-protein|Name=jgi.p|Nanoce1779_2|595301|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MPPGLPPQGPNREALRLYREILRTARRFYWPNDHGESWRDVLRREARKEF
EQAREERDPLIVARLLVVGRDCVMQTQYKFDMAQMKIKENVDKTRTRDKR
*
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mRNA from alignment at scaffold_16:71044..71801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7020 ID=mRNA_7020|Name=jgi.p|Nanoce1779_2|595301|organism=Nannochloropsis oceanica|type=mRNA|length=758bp|location=Sequence derived from alignment at scaffold_16:71044..71801- (Nannochloropsis oceanica)
AGTATTATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAAGCGCT
ACGACTGTACCGAGGTATGTCCCCTCATCTTCAACCTCCTCACTCCCTCC
CTGACTCCCTCCCTCCTTTACTCACTCATCAGTTTTCTCCTCCCCCCCTT
CCTCCCCAGAGATATTACGTACCGCCCGTCGTTTCTACTGGCCTAACGAC
CACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCCGGAAGGAATT
TGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCGAGGTTGCTGG
TGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGGTGCGAATGAGG
TGGAGAGGTAGAGGAAGAGAGAGGGTGGTGGACATGGAGGAAAGAGGTAC
ACAGAGTGCTTGTACATGGATTCAAGGAAGCACAACGTCTTACTTATTTT
CTCTCCTCTTCCTCACCCTTCCTTGCTCATTTTCCCTCCCTAATTCTCGC
TCCCTTTTTATTTCCCCTTTCCACTCCCTCCCAGTTCGACATGGCCCAGA
TGAAGATCAAGGAGAATGTGGACAAGACACGGACACGCGATAAGAGATAA
GGCATTCGCTTCCCAACTTGATACAAAAGATGCTACGTGAAAATAAACTG
ATTCAATAAGTCTCTCATTTTTTAGCAGCAAAGGTTGACGCGTGTACAAG
AAGGAGGATTTTGTACATAGAAAGAACGGAGAAAGTGACATTCATAACGG
CTTGAGTC
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Coding sequence (CDS) from alignment at scaffold_16:71044..71801-

>mRNA_7020 ID=mRNA_7020|Name=jgi.p|Nanoce1779_2|595301|organism=Nannochloropsis oceanica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_16:71044..71801- (Nannochloropsis oceanica)
TTCGACATGGCCCAGATGAAGATCAAGGAGAATGTGGACAAGACACGGAC
ACGCGATAAGAGATAAAGATATTACGTACCGCCCGTCGTTTCTACTGGCC
TAACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCCGGA
AGGAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCGAGG
TTGCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGATGCC
ACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAAGCGCTACGACTGTACC
GAGTTCGACATGGCCCAGATGAAGATCAAGGAGAATGTGGACAAGACACG
GACACGCGATAAGAGATAAAGATATTACGTACCGCCCGTCGTTTCTACTG
GCCTAACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAGCCC
GGAAGGAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTGGCG
AGGTTGCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAAGAT
GCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAAGCGCTACGACTGT
ACCGAGTTCGACATGGCCCAGATGAAGATCAAGGAGAATGTGGACAAGAC
ACGGACACGCGATAAGAGATAAAGATATTACGTACCGCCCGTCGTTTCTA
CTGGCCTAACGACCACGGCGAGTCCTGGCGAGACGTCCTTCGAAGGGAAG
CCCGGAAGGAATTTGAGCAAGCGCGGGAAGAACGGGACCCTCTGATTGTG
GCGAGGTTGCTGGTGGTGGGGAGGGATTGCGTCATGCAGACACAGTACAA
GATGCCACCAGGTCTCCCGCCACAGGGCCCCAATCGGGAAGCGCTACGAC
TGTACCGAG
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Synonyms
Publications