jgi.p|Nanoce1779_2|573843, mRNA_702 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573843
Unique Name	mRNA_702
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	849
Alignment location	scaffold_2:226491..227688 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573929
Track	FilteredModels2
ProteinId	573843

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:226491..227688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573843	gene_702	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573843	mRNA_702-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_702	CDS_702	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:226491..227688+
coding sequence from alignment at scaffold_2:226491..227688+

mRNA sequence

>mRNA_702 ID=mRNA_702|Name=jgi.p|Nanoce1779_2|573843|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
ACAGACACGCCTAAAGAAGCTATGCTGACCCACATCGTCCGCACTGCCAC
CAAGCCGCCGGTGGCTGCCATGCTGTCGCCCTTGGCTTCGATACCAAGCA
TCAGCAGCTCCCTGGCCAGCAGCAGCAACGCTTACAGCGGCACCAAGAGG
TGGGTGTCTTCTAAACCCGCCGCCCTACACCCGCGTTATGGGTTTTACGG
CGGGGACCATGCAGGCCACTTGACGATGCACGCCACCACCATCCTCTGTG
TACGCAAGGGCGACAAGGTGGTCATGATGGGTGACGGGCAAGTATCACAA
GGGTCCACGGTGGTGAAGCCGAATGCGAAAAAGGTGCGGCGGATTGGAGA
GGACATAATTGCTGGTTTTGCTGGCTCGACCGCTGACTGCTTCACGCTGA
TGGAGCGTCTGGAGCGGAAACTGGAGGAGCATCCAGGTCAGTTAACACGG
GCATGCGTAGATTTAGCGAAAGCCTGGCGGACAGACAAGTACTTGCGGCG
GTTGGAGGCGTCATTGTTGGTGGCGGATAAGAACGTGTCGTTTGAGATTA
CGGGACTGGGTGACGTGTTGGAGCCCAAGGATGGGATAATTGCCATTGGT
TCCGGGGGTACATTTGCATTAGCTGCGGCCAAAGCGTTACTGGACCGGGA
CGACATGGACGCTGAGCAAATCGCACACAAAGCCATGTCCATTGCCGCCG
ATATCTGTGTCTACACAAACAACAACTTCGTCACCGAGGTTGTTGGAGGG
GAGAAGGAGAACGAGGAGGAGAAGGCGGGAAAAGCAGGCTAGAAGTCATG
AATATGAGAAAACAGAGGCTGTGAGATATATAACTTGGAGAAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|573843

>mRNA_702-protein ID=mRNA_702-protein|Name=jgi.p|Nanoce1779_2|573843|organism=Nannochloropsis oceanica|type=polypeptide|length=257bp
MLTHIVRTATKPPVAAMLSPLASIPSISSSLASSSNAYSGTKRWVSSKPA
ALHPRYGFYGGDHAGHLTMHATTILCVRKGDKVVMMGDGQVSQGSTVVKP
NAKKVRRIGEDIIAGFAGSTADCFTLMERLERKLEEHPGQLTRACVDLAK
AWRTDKYLRRLEASLLVADKNVSFEITGLGDVLEPKDGIIAIGSGGTFAL
AAAKALLDRDDMDAEQIAHKAMSIAADICVYTNNNFVTEVVGGEKENEEE
KAGKAG*

mRNA from alignment at scaffold_2:226491..227688+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_702 ID=mRNA_702|Name=jgi.p|Nanoce1779_2|573843|organism=Nannochloropsis oceanica|type=mRNA|length=1198bp|location=Sequence derived from alignment at scaffold_2:226491..227688+ (Nannochloropsis oceanica)
ACAGACACGCCTAAAGAAGCTATGCTGACCCACATCGTCCGCACTGCCAC
CAAGCCGCCGGTGGCTGCCATGCTGTCGCCCTTGGCTTCGATACCAAGCA
TCAGCAGCTCCCTGGCCAGCAGCAGCAACGCTTACAGCGGCACCAAGAGG
TGGGTGTCTTCTAAACCCGCCGCCCTACACCCGCGTTATGGGTTTTACGG
CGGGGACCATGCAGGCCACTTGACGATGCACGCCACCACCATCCTCTGTG
TACGCAAGGGCGACAAGGTGGTCATGATGGGTGACGGGCAAGTATCACAA
GGGTCCACGGTGGTGAAGCCGAATGCGAAAAAGGTGCGGCGGATTGGAGA
GGACATAATTGCTGGTTTTGCTGGCTCGACCGCTGACTGCTTCACGCTGA
TGGAGCGTCTGGAGCGGAAACTGGAGGAGCATCCAGGTCAGTTAACACGG
GCATGCGTAGATTTAGCGAAAGCCTGGCGGACAGACAAGTACTTGCGGCG
GTTGGAGGCGTCATTGTTGGTGGCGGATAAGAACGTGTCGTTTGAGATTA
CGGGACTGGGTGACGTGTTGGAGCCCAAGGATGGGATAATTGCCATTGGT
TCCGGGGGTACATTTGCATTAGGTAAGTGGTTGTAGGTGGGATGATGCTT
TTCTTTGGAGAGGAAGTGGTATAGAGATGTGGAGAGGAGGAGAGGAGTGG
TGAGGTACTCTGACTTGTGGAAGACAAGCCACGCGAAGAAGAGCGTTTTA
CCCGGTTCATTCACATGAAGATATCATTTTCCCCCTTTAGGATGCTTGTA
TACTTTCTCAACCATAGACTTACACAGCCAAAGTCTTTCCCTCACTCTCC
ATCATTGCTGGTCAATATTATACCTGTCTCTTGTCCCGTCATTCGCGCGG
CAATTGTTTTTTTGGTTTCAGCATCACTCCAACCATGTTGAAACGCCTAT
ACACCAACTCATTTACAACAGCTGCGGCCAAAGCGTTACTGGACCGGGAC
GACATGGACGCTGAGCAAATCGCACACAAAGCCATGTCCATTGCCGCCGA
TATCTGTGTCTACACAAACAACAACTTCGTCACCGAGGTTGTTGGAGGGG
AGAAGGAGAACGAGGAGGAGAAGGCGGGAAAAGCAGGCTAGAAGTCATGA
ATATGAGAAAACAGAGGCTGTGAGATATATAACTTGGAGAAGGGAGGG

Coding sequence (CDS) from alignment at scaffold_2:226491..227688+

>mRNA_702 ID=mRNA_702|Name=jgi.p|Nanoce1779_2|573843|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at scaffold_2:226491..227688+ (Nannochloropsis oceanica)
ATGCTGACCCACATCGTCCGCACTGCCACCAAGCCGCCGGTGGCTGCCAT
GCTGTCGCCCTTGGCTTCGATACCAAGCATCAGCAGCTCCCTGGCCAGCA
GCAGCAACGCTTACAGCGGCACCAAGAGGTGGGTGTCTTCTAAACCCGCC
GCCCTACACCCGCGTTATGGGTTTTACGGCGGGGACCATGCAGGCCACTT
GACGATGCACGCCACCACCATCCTCTGTGTACGCAAGGGCGACAAGGTGG
TCATGATGGGTGACGGGCAAGTATCACAAGGGTCCACGGTGGTGAAGCCG
AATGCGAAAAAGGTGCGGCGGATTGGAGAGGACATAATTGCTGGTTTTGC
TGGCTCGACCGCTGACTGCTTCACGCTGATGGAGCGTCTGGAGCGGAAAC
TGGAGGAGCATCCAGGTCAGTTAACACGGGCATGCGTAGATTTAGCGAAA
GCCTGGCGGACAGACAAGTACTTGCGGCGGTTGGAGGCGTCATTGTTGGT
GGCGGATAAGAACGTGTCGTTTGAGATTACGGGACTGGGTGACGTGTTGG
AGCCCAAGGATGGGATAATTGCCATTGGTTCCGGGGGTACATTTGCATTA
GCTGCGGCCAAAGCGTTACTGGACCGGGACGACATGGACGCTGAGCAAAT
CGCACACAAAGCCATGTCCATTGCCGCCGATATCTGTGTCTACACAAACA
ACAACTTCGTCACCGAGGTTGTTGGAGGGGAGAAGGAGAACGAGGAGGAG
AAGGCGGGAAAAGCAGGCTAGATGCTGACCCACATCGTCCGCACTGCCAC
CAAGCCGCCGGTGGCTGCCATGCTGTCGCCCTTGGCTTCGATACCAAGCA
TCAGCAGCTCCCTGGCCAGCAGCAGCAACGCTTACAGCGGCACCAAGAGG
TGGGTGTCTTCTAAACCCGCCGCCCTACACCCGCGTTATGGGTTTTACGG
CGGGGACCATGCAGGCCACTTGACGATGCACGCCACCACCATCCTCTGTG
TACGCAAGGGCGACAAGGTGGTCATGATGGGTGACGGGCAAGTATCACAA
GGGTCCACGGTGGTGAAGCCGAATGCGAAAAAGGTGCGGCGGATTGGAGA
GGACATAATTGCTGGTTTTGCTGGCTCGACCGCTGACTGCTTCACGCTGA
TGGAGCGTCTGGAGCGGAAACTGGAGGAGCATCCAGGTCAGTTAACACGG
GCATGCGTAGATTTAGCGAAAGCCTGGCGGACAGACAAGTACTTGCGGCG
GTTGGAGGCGTCATTGTTGGTGGCGGATAAGAACGTGTCGTTTGAGATTA
CGGGACTGGGTGACGTGTTGGAGCCCAAGGATGGGATAATTGCCATTGGT
TCCGGGGGTACATTTGCATTAGCTGCGGCCAAAGCGTTACTGGACCGGGA
CGACATGGACGCTGAGCAAATCGCACACAAAGCCATGTCCATTGCCGCCG
ATATCTGTGTCTACACAAACAACAACTTCGTCACCGAGGTTGTTGGAGGG
GAGAAGGAGAACGAGGAGGAGAAGGCGGGAAAAGCAGGCTAG

Synonyms

Publications