jgi.p|Nanoce1779_2|595299, mRNA_7019 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595299
Unique NamemRNA_7019
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length614
Alignment locationscaffold_16:69158..69895 -

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Properties
Property NameValue
TranscriptId595385
TrackFilteredModels2
ProteinId595299
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:69158..69895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595299gene_7019Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595299mRNA_7019-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7019CDS_7019Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7019 ID=mRNA_7019|Name=jgi.p|Nanoce1779_2|595299|organism=Nannochloropsis oceanica|type=mRNA|length=614bp
ACAGCATAGAAACGGACTGCGGCAAACCAGCATAAGGATGCAGGTCCCCT
TCAGTATCACTGCCGTCCTACTCTCTTTCCTCGTTATCGTCTCCGCGCAG
CAGCGTCTGTCATTGCGTGTCCGGACCCTGGCGGCTGTAGAGGAGGACAA
GCAAAGCGCATATGGCCAACTCAGCAGCGGGGATCCGACGGGGGGGAATG
GCCGTAGCGACGGTGAGGGCGACTGGACAGCCCTACTAATTCCACTCGAC
AAGCCGGCAGAGATCGAAAAGAACGGGAAGCAGAGCATCAACGAAATGCT
AAGCAACGGTGGCCGACGAACCTGGCATGGAGGCTGGAATGGATGGGGGT
GGACCAAAGGTATGATTATGAAAGCTGACTCTTGACCCTTTTTTCTTTTT
TCTTTTACATTTGTATTTTTTGAGGATGTGTGGAGTTATTAAGTCTAGGG
CCAGGATTTATTATCATCACCATTTTTTTGTTTGATGATGATGATGATTA
TTATTATTACTATTATTATTACTATTATTATTATTATTACTATTACTATT
ACTATTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTA
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protein sequence of jgi.p|Nanoce1779_2|595299

>mRNA_7019-protein ID=mRNA_7019-protein|Name=jgi.p|Nanoce1779_2|595299|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MQVPFSITAVLLSFLVIVSAQQRLSLRVRTLAAVEEDKQSAYGQLSSGDP
TGGNGRSDGEGDWTALLIPLDKPAEIEKNGKQSINEMLSNGGRRTWHGGW
NGWGWTKGMIMKADS*
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mRNA from alignment at scaffold_16:69158..69895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7019 ID=mRNA_7019|Name=jgi.p|Nanoce1779_2|595299|organism=Nannochloropsis oceanica|type=mRNA|length=738bp|location=Sequence derived from alignment at scaffold_16:69158..69895- (Nannochloropsis oceanica)
ACAGCATAGAAACGGACTGCGGCAAACCAGCATAAGGATGCAGGTCCCCT
TCAGTATCACTGCCGTCCTACTCTCTTTCCTCGTTATCGTCTCCGCGCAG
CAGCGTCTGTCATTGCGTGTCCGGACCCTGGCGGCTGTAGAGGAGGACAA
GCAAAGCGCATATGGCCAACTCAGCAGCGGGGATCCGACGGGGGGGAATG
GCCGTAGCGACGGTGAGGGCGACTGGACAGGTAAAAATCAAGGGAAAGGC
AGCATAAACGTAGGTCTTGGTATGGTAGAAATTATTTTTGACCCTTTTTC
CTTCCCTTCCTTTTTCCTTCCCTTCCTCTTTCCCTCCAACCCCCTCTGTT
TCAGCCCTACTAATTCCACTCGACAAGCCGGCAGAGATCGAAAAGAACGG
GAAGCAGAGCATCAACGAAATGCTAAGCAACGGTGGCCGACGAACCTGGC
ATGGAGGCTGGAATGGATGGGGGTGGACCAAAGGTATGATTATGAAAGCT
GACTCTTGACCCTTTTTTCTTTTTTCTTTTACATTTGTATTTTTTGAGGA
TGTGTGGAGTTATTAAGTCTAGGGCCAGGATTTATTATCATCACCATTTT
TTTGTTTGATGATGATGATGATTATTATTATTACTATTATTATTACTATT
ATTATTATTATTACTATTACTATTACTATTATTATTATTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTA
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Coding sequence (CDS) from alignment at scaffold_16:69158..69895-

>mRNA_7019 ID=mRNA_7019|Name=jgi.p|Nanoce1779_2|595299|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_16:69158..69895- (Nannochloropsis oceanica)
CCCTACTAATTCCACTCGACAAGCCGGCAGAGATCGAAAAGAACGGGAAG
CAGAGCATCAACGAAATGCTAAGCAACGGTGGCCGACGAACCTGGCATGG
AGGCTGGAATGGATGGGGGTGGACCAAAGGTATGATTATGAAAGCTGACT
CTTGAATGCAGGTCCCCTTCAGTATCACTGCCGTCCTACTCTCTTTCCTC
GTTATCGTCTCCGCGCAGCAGCGTCTGTCATTGCGTGTCCGGACCCTGGC
GGCTGTAGAGGAGGACAAGCAAAGCGCATATGGCCAACTCAGCAGCGGGG
ATCCGACGGGGGGGAATGGCCGTAGCGACGGTGAGGGCGACTGGACAGCC
CTACTAATTCCACTCGACAAGCCGGCAGAGATCGAAAAGAACGGGAAGCA
GAGCATCAACGAAATGCTAAGCAACGGTGGCCGACGAACCTGGCATGGAG
GCTGGAATGGATGGGGGTGGACCAAAGGTATGATTATGAAAGCTGACTCT
TGAATGCAGGTCCCCTTCAGTATCACTGCCGTCCTACTCTCTTTCCTCGT
TATCGTCTCCGCGCAGCAGCGTCTGTCATTGCGTGTCCGGACCCTGGCGG
CTGTAGAGGAGGACAAGCAAAGCGCATATGGCCAACTCAGCAGCGGGGAT
CCGACGGGGGGGAATGGCCGTAGCGACGGTGAGGGCGACTGGACAG
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Synonyms
Publications