jgi.p|Nanoce1779_2|595295, mRNA_7018 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595295
Unique NamemRNA_7018
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length850
Alignment locationscaffold_16:67855..68704 +

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Properties
Property NameValue
TranscriptId595381
TrackFilteredModels2
ProteinId595295
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:67855..68704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595295gene_7018Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595295mRNA_7018-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7018CDS_7018Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7018 ID=mRNA_7018|Name=jgi.p|Nanoce1779_2|595295|organism=Nannochloropsis oceanica|type=mRNA|length=850bp
TCAAACGAATTCGAACTGTTTGCTTCTATTGCTCATGCATTGTTTGTCCC
TGTATCACCGCGTTAATTTCTAACCTAAAAAAGGATGCATTCTAGTACAT
TTCTATCATCCCTAAGCAATAAAAATCTGAGGGCCCCGCTTAATCCTACA
CTGACCGCGGGGTATGATAGGTGGGATTTTCATAGATTGATGGATGATGC
CGCGCTCTCGCTGCTGCTGCTGCTGCTGCTACTACTACTACTGCTTTTAT
TGATACTCTCACCTTTACTTGACATGTTTTCCGCCTTCTGTCCGATTGCT
CATCTCTGGCGTGTACACGTGAGAGGGACCGAAAACTTCATCCACACCCG
CTGCCCTCCTTTCCTCCTTCCCTTCCTCCCTCCATCTTTCCCTCCTTCCT
TTACACTCTCTATTTTCGACCTCTTTTCATTAATTATAACCTTCTCCCCT
TTACTTCCATCTGGTGACATATACAGATCATGTAGGACAACGGTTTCCTA
GACGCCATGCAGAACGCGATGCCCTGGCTCTTCCACCGTCGCTTTCACCG
TTGCTGCTGTTGTTTCCACCGTCGCTGTCGTCGCTGCTGTCGCTGCTGTG
ACCGCTGTTGCCGCTGTCGCTGCTGTAGCTGCCGTGGCTTCCATCGTGGC
TGTCGTCGCTGCTGCAGCTTGATTTCCAGTCTCGCCCACCAGGTCGCCTA
CGTCTATTAAAAAGAGGGAAGGAGGGAAGGTGAGGACACAGGAGGTGGTG
ATAATAATACTAATAATACTAATAATACTACTAATACTACTAATAATACT
ACTAATAATACTACTACAACTACAACAACAACAACAACAACAACAACAAC
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protein sequence of jgi.p|Nanoce1779_2|595295

>mRNA_7018-protein ID=mRNA_7018-protein|Name=jgi.p|Nanoce1779_2|595295|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MHSSTFLSSLSNKNLRAPLNPTLTAGYDRWDFHRLMDDAALSLLLLLLLL
LLLLLLILSPLLDMFSAFCPIAHLWRVHVRGTENFIHTRCPPFLLPFLPP
SFPPSFTLSIFDLFSLIITFSPLLPSGDIYRSCRTTVS*
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mRNA from alignment at scaffold_16:67855..68704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7018 ID=mRNA_7018|Name=jgi.p|Nanoce1779_2|595295|organism=Nannochloropsis oceanica|type=mRNA|length=850bp|location=Sequence derived from alignment at scaffold_16:67855..68704+ (Nannochloropsis oceanica)
TCAAACGAATTCGAACTGTTTGCTTCTATTGCTCATGCATTGTTTGTCCC
TGTATCACCGCGTTAATTTCTAACCTAAAAAAGGATGCATTCTAGTACAT
TTCTATCATCCCTAAGCAATAAAAATCTGAGGGCCCCGCTTAATCCTACA
CTGACCGCGGGGTATGATAGGTGGGATTTTCATAGATTGATGGATGATGC
CGCGCTCTCGCTGCTGCTGCTGCTGCTGCTACTACTACTACTGCTTTTAT
TGATACTCTCACCTTTACTTGACATGTTTTCCGCCTTCTGTCCGATTGCT
CATCTCTGGCGTGTACACGTGAGAGGGACCGAAAACTTCATCCACACCCG
CTGCCCTCCTTTCCTCCTTCCCTTCCTCCCTCCATCTTTCCCTCCTTCCT
TTACACTCTCTATTTTCGACCTCTTTTCATTAATTATAACCTTCTCCCCT
TTACTTCCATCTGGTGACATATACAGATCATGTAGGACAACGGTTTCCTA
GACGCCATGCAGAACGCGATGCCCTGGCTCTTCCACCGTCGCTTTCACCG
TTGCTGCTGTTGTTTCCACCGTCGCTGTCGTCGCTGCTGTCGCTGCTGTG
ACCGCTGTTGCCGCTGTCGCTGCTGTAGCTGCCGTGGCTTCCATCGTGGC
TGTCGTCGCTGCTGCAGCTTGATTTCCAGTCTCGCCCACCAGGTCGCCTA
CGTCTATTAAAAAGAGGGAAGGAGGGAAGGTGAGGACACAGGAGGTGGTG
ATAATAATACTAATAATACTAATAATACTACTAATACTACTAATAATACT
ACTAATAATACTACTACAACTACAACAACAACAACAACAACAACAACAAC
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Coding sequence (CDS) from alignment at scaffold_16:67855..68704+

>mRNA_7018 ID=mRNA_7018|Name=jgi.p|Nanoce1779_2|595295|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_16:67855..68704+ (Nannochloropsis oceanica)
ATGCATTCTAGTACATTTCTATCATCCCTAAGCAATAAAAATCTGAGGGC
CCCGCTTAATCCTACACTGACCGCGGGGTATGATAGGTGGGATTTTCATA
GATTGATGGATGATGCCGCGCTCTCGCTGCTGCTGCTGCTGCTGCTACTA
CTACTACTGCTTTTATTGATACTCTCACCTTTACTTGACATGTTTTCCGC
CTTCTGTCCGATTGCTCATCTCTGGCGTGTACACGTGAGAGGGACCGAAA
ACTTCATCCACACCCGCTGCCCTCCTTTCCTCCTTCCCTTCCTCCCTCCA
TCTTTCCCTCCTTCCTTTACACTCTCTATTTTCGACCTCTTTTCATTAAT
TATAACCTTCTCCCCTTTACTTCCATCTGGTGACATATACAGATCATGTA
GGACAACGGTTTCCTAG
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Synonyms
Publications