jgi.p|Nanoce1779_2|99510, mRNA_7016 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|99510
Unique NamemRNA_7016
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1303
Alignment locationscaffold_16:63809..65246 +

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Properties
Property NameValue
TranscriptId99596
TrackFilteredModels2
ProteinId99510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:63809..65246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|99510gene_7016Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|99510mRNA_7016-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7016CDS_7016Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7016 ID=mRNA_7016|Name=jgi.p|Nanoce1779_2|99510|organism=Nannochloropsis oceanica|type=mRNA|length=1303bp
CGGGCACCAAGCCGATGATCCGGGTATGGTTTGCTGCCTCTCGGAAACAA
CCCCCGACGCTCCCTCCTGACTTGGACGCACTCGAGGAAGCGCTCAACAC
AATCGAAGAGCGGGTCATTGTCCTGACCAGCGCCGTTGCCGCCGCATCCT
CCTCCCCTTCTCCCTCTTCCCCTCCCTCTAATGCATCAACCTCCTTCACT
TCCTTCTCCCTCTCGGAGGGGGGATGGGGGAAGGAGGACGGGGGGGTGGT
CGACCTCCCCCCCCTTCTCGCCCTTCCTCGGCGTCTGCAGGCCACACACC
GTCTCCTCTCTTCCCTTCGCGCTCTCCACGCACAGGAGGAAGGGAGGGAG
GGAGGGAAGGAGGGAGAGCTGCCAGCGCCCTTGGATTTGAGAGAAGCCTT
CCGAGAGAGGGACCAGAAGACGGTGCTCCAGGTAAGGAGGGAGAGAGGGC
GGATGGGAAGGGAGGAAAGCGAGGGTGCCGGGCAGACACAGGGAAGAAGA
AAAGAGGACGGGAGGGAGGGGGAAAGGGGAGGAGGAAGGGAAAAAGTAAG
AGGAAGAAAATCAAAACCAATCGTCTCTTCTTTTTCTTCTTTTTCATTTT
CAACAGTTCGAAACGGCCGTGGAGGAATGGAGCGCAACCCAACGCCCCGT
CAACGATCTCCTTTCCTCCCCCCCTTCCTCCTTCCCTCCCTCCTCCTCCT
TCTTCTTGTTCTTCCCGCGGGAGATCTCACCAGTGGCGCGGCTCGACGCT
GCGTACTCATCCTCCTCCTGCTGGGGATGGACTTACGTCCCTCTCCATCT
CACTGCTGCTGTTGCTGCTGCTGCTTATGATGATGATGAGAGAGATGTTT
GTCGTACTGCTGCTGTTGCTGCTGCGGCGGCGGCGGCGGCGGCGGAGGGA
GGAGATGAAAAATGGAGTGAGAAAGGGAGGGAAAGGGAGAGAAAGAGGAG
AAAAGTGGAAGTGGAGGGGTACGGAGAGGGAGAGAGGGGAGACACGCCAC
CTTACTGAGGAGGAGGATGGAAGCTGGGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAAGAGAAAGAAGACGCGGAAAAAGTAAAATAAAAAAAGAAGCA
TATGAAATAGTGTACTCCTCTTGATGCTGCTGCTGCTGCCACGGCTGCTA
CTGCTGAAATCTGAGTTTGCTTTTTGATGTCATTCGGGGAGCCATGCTGC
TGTTGATTATATTTACGGCCTCTGTCGCGCGCATTCGACCGTTCCCTTAC
CATTTCACTTTCCCCTTATCTACACCCTCCCTCCCTCCCTCCTTCCCCTC
CCT
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protein sequence of jgi.p|Nanoce1779_2|99510

>mRNA_7016-protein ID=mRNA_7016-protein|Name=jgi.p|Nanoce1779_2|99510|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MGEGGRGGGRPPPPSRPSSASAGHTPSPLFPSRSPRTGGREGGREGGRAA
SALGFERSLPREGPEDGAPGKEGERADGKGGKRGCRADTGKKKRGREGGG
KGRRKGKSKRKKIKTNRLFFFFFFIFNSSKRPWRNGAQPNAPSTISFPPP
LPPSLPPPPSSCSSRGRSHQWRGSTLRTHPPPAGDGLTSLSISLLLLLLL
LMMMMREMFVVLLLLLLRRRRRRRREEMKNGVRKGGKGRERGEKWKWRGT
ERERGETRHLTEEEDGSWVGREGGREGGKRKKTRKK*
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mRNA from alignment at scaffold_16:63809..65246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7016 ID=mRNA_7016|Name=jgi.p|Nanoce1779_2|99510|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp|location=Sequence derived from alignment at scaffold_16:63809..65246+ (Nannochloropsis oceanica)
CGGGCACCAAGCCGATGATCCGGGTATGGTTTGCTGCCTCTCGGAAACAA
CCCCCGACGCTCCCTCCTGACTTGGACGCACGTAAGAAAGAGAAAGGAGG
GAGGAAGGGAAGGAGGGAGGAAGGGAAGGAAAGAGGGAGGGAGAAAGTGT
GTTTTGGGCTGTATCCTGCCATTCATTCACACCCTCTCCTCCCTCCCTCC
CTCCCTCCCTCCCCAGTCGAGGAAGCGCTCAACACAATCGAAGAGCGGGT
CATTGTCCTGACCAGCGCCGTTGCCGCCGCATCCTCCTCCCCTTCTCCCT
CTTCCCCTCCCTCTAATGCATCAACCTCCTTCACTTCCTTCTCCCTCTCG
GAGGGGGGATGGGGGAAGGAGGACGGGGGGGTGGTCGACCTCCCCCCCCT
TCTCGCCCTTCCTCGGCGTCTGCAGGCCACACACCGTCTCCTCTCTTCCC
TTCGCGCTCTCCACGCACAGGAGGAAGGGAGGGAGGGAGGGAAGGAGGGA
GAGCTGCCAGCGCCCTTGGATTTGAGAGAAGCCTTCCGAGAGAGGGACCA
GAAGACGGTGCTCCAGGTAAGGAGGGAGAGAGGGCGGATGGGAAGGGAGG
AAAGCGAGGGTGCCGGGCAGACACAGGGAAGAAGAAAAGAGGACGGGAGG
GAGGGGGAAAGGGGAGGAGGAAGGGAAAAAGTAAGAGGAAGAAAATCAAA
ACCAATCGTCTCTTCTTTTTCTTCTTTTTCATTTTCAACAGTTCGAAACG
GCCGTGGAGGAATGGAGCGCAACCCAACGCCCCGTCAACGATCTCCTTTC
CTCCCCCCCTTCCTCCTTCCCTCCCTCCTCCTCCTTCTTCTTGTTCTTCC
CGCGGGAGATCTCACCAGTGGCGCGGCTCGACGCTGCGTACTCATCCTCC
TCCTGCTGGGGATGGACTTACGTCCCTCTCCATCTCACTGCTGCTGTTGC
TGCTGCTGCTTATGATGATGATGAGAGAGATGTTTGTCGTACTGCTGCTG
TTGCTGCTGCGGCGGCGGCGGCGGCGGCGGAGGGAGGAGATGAAAAATGG
AGTGAGAAAGGGAGGGAAAGGGAGAGAAAGAGGAGAAAAGTGGAAGTGGA
GGGGTACGGAGAGGGAGAGAGGGGAGACACGCCACCTTACTGAGGAGGAG
GATGGAAGCTGGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGAAA
GAAGACGCGGAAAAAGTAAAATAAAAAAAGAAGCATATGAAATAGTGTAC
TCCTCTTGATGCTGCTGCTGCTGCCACGGCTGCTACTGCTGAAATCTGAG
TTTGCTTTTTGATGTCATTCGGGGAGCCATGCTGCTGTTGATTATATTTA
CGGCCTCTGTCGCGCGCATTCGACCGTTCCCTTACCATTTCACTTTCCCC
TTATCTACACCCTCCCTCCCTCCCTCCTTCCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_16:63809..65246+

>mRNA_7016 ID=mRNA_7016|Name=jgi.p|Nanoce1779_2|99510|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_16:63809..65246+ (Nannochloropsis oceanica)
ATGGGGGAAGGAGGACGGGGGGGTGGTCGACCTCCCCCCCCTTCTCGCCC
TTCCTCGGCGTCTGCAGGCCACACACCGTCTCCTCTCTTCCCTTCGCGCT
CTCCACGCACAGGAGGAAGGGAGGGAGGGAGGGAAGGAGGGAGAGCTGCC
AGCGCCCTTGGATTTGAGAGAAGCCTTCCGAGAGAGGGACCAGAAGACGG
TGCTCCAGGTAAGGAGGGAGAGAGGGCGGATGGGAAGGGAGGAAAGCGAG
GGTGCCGGGCAGACACAGGGAAGAAGAAAAGAGGACGGGAGGGAGGGGGA
AAGGGGAGGAGGAAGGGAAAAAGTAAGAGGAAGAAAATCAAAACCAATCG
TCTCTTCTTTTTCTTCTTTTTCATTTTCAACAGTTCGAAACGGCCGTGGA
GGAATGGAGCGCAACCCAACGCCCCGTCAACGATCTCCTTTCCTCCCCCC
CTTCCTCCTTCCCTCCCTCCTCCTCCTTCTTCTTGTTCTTCCCGCGGGAG
ATCTCACCAGTGGCGCGGCTCGACGCTGCGTACTCATCCTCCTCCTGCTG
GGGATGGACTTACGTCCCTCTCCATCTCACTGCTGCTGTTGCTGCTGCTG
CTTATGATGATGATGAGAGAGATGTTTGTCGTACTGCTGCTGTTGCTGCT
GCGGCGGCGGCGGCGGCGGCGGAGGGAGGAGATGAAAAATGGAGTGAGAA
AGGGAGGGAAAGGGAGAGAAAGAGGAGAAAAGTGGAAGTGGAGGGGTACG
GAGAGGGAGAGAGGGGAGACACGCCACCTTACTGAGGAGGAGGATGGAAG
CTGGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAGAAAGAAGACGC
GGAAAAAGTAA
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Synonyms
Publications