jgi.p|Nanoce1779_2|595289, mRNA_7015 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595289
Unique NamemRNA_7015
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length948
Alignment locationscaffold_16:63137..64698 +

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Properties
Property NameValue
TranscriptId595375
TrackFilteredModels2
ProteinId595289
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:63137..64698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595289gene_7015Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595289mRNA_7015-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7015CDS_7015Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7015 ID=mRNA_7015|Name=jgi.p|Nanoce1779_2|595289|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
GGGAGGGAGGGAGGGAGGTAGAAATCTTAGTTTCCCTCTAGCTTTCGCCC
GCCAAAAACACGCACACACAAGCACCACGCGTATAACACACGACCTACAC
AACGCATAACCCACCGCGTATAACACACGACCTACACAACGCATAACCCA
CCGCACATGACAGCTGTCAGTGCTGGGAGGGAGGCTAGAGGACAAGTATC
ACCTTTTTCTCTCCTCCTCTTCCAACCCCCACTCGTCCTCCTCGCTTCCT
CCCAAGCTGCGCGCCGAGGCCGCCCGTCTGGCTCTAGTGGAGGCTCAAAT
TTATCAAACCCTCGAAGCCGCCGCCTTCCTCTTGGCCCTCCCAGGCATCA
CGGCTGCCCTCTCTCCGGCGGGCACCAAGCCGATGATCCGGGTATGGTTT
GCTGCCTCTCGGAAACAACCCCCGACGCTCCCTCCTGACTTGGACGCACT
CGAGGAAGCGCTCAACACAATCGAAGAGCGGGTCATTGTCCTGACCAGCG
CCGTTGCCGCCGCATCCTCCTCCCCTTCTCCCTCTTCCCCTCCCTCTAAT
GCATCAACCTCCTTCACTTCCTTCTCCCTCTCGGAGGGGGGATGGGGGAA
GGAGGACGGGGGGGTGGTCGACCTCCCCCCCCTTCTCGCCCTTCCTCGGC
GTCTGCAGGCCACACACCGTCTCCTCTCTTCCCTTCGCGCTCTCCACGCA
CAGGAGGAAGGGAGGGAGGGAGGGAAGGAGGGAGAGCTGCCAGCGCCCTT
GGATTTGAGAGAAGCCTTCCGAGAGAGGGACCAGAAGACGGTGCTCCAGT
TCGAAACGGCCGTGGAGGAATGGAGCGCAACCCAACGCCCCGTCAACGAT
CTCCTTTCCTCCCCCCCTTCCTCCTTCCCTCCCTCCTCCTCCTTCTTCTT
GTTCTTCCCGCGGGAGATCTCACCAGTGGCGCGGCTCGACGCTGCGTA
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protein sequence of jgi.p|Nanoce1779_2|595289

>mRNA_7015-protein ID=mRNA_7015-protein|Name=jgi.p|Nanoce1779_2|595289|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MTAVSAGREARGQVSPFSLLLFQPPLVLLASSQAARRGRPSGSSGGSNLS
NPRSRRLPLGPPRHHGCPLSGGHQADDPGMVCCLSETTPDAPS*
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mRNA from alignment at scaffold_16:63137..64698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7015 ID=mRNA_7015|Name=jgi.p|Nanoce1779_2|595289|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp|location=Sequence derived from alignment at scaffold_16:63137..64698+ (Nannochloropsis oceanica)
GGGAGGGAGGGAGGGAGGTAGAAATCTTAGTTTCCCTCTAGCTTTCGCCC
GCCAAAAACACGCACACACAAGCACCACGCGTATAACACACGACCTACAC
AACGCATAACCCACCGCGTATAACACACGACCTACACAACGCATAACCCA
CCGCACATGACAGCTGTCAGTGCTGGGAGGGAGGCTAGAGGACAAGTATC
ACCTTTTTCTCTCCTCCTCTTCCAACCCCCACTCGTCCTCCTCGCTTCCT
CCCAAGGCACGTCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCATT
CGGGGCTTCCCCCCCCCCCCCGCCATTCATCCTCCCTCCCTCCCCTCCCT
CCCTCCCTCCCTACCCCCCCTCCCAGCTGCGCGCCGAGGCCGCCCGTCTG
GCTCTAGTGGAGGCTCAAATTTATCAAACCCTCGAAGCCGCCGCCTTCCT
CTTGGCCCTCCCAGGTGGGGAGGCAAGGAGGGAGGGGAGGGAGGGAGGGA
GAAAAAGGAGGGAGGACGGAAGAAAGGAAAAGAAGGTGGGCAGGGTACTG
TCCACGCATCCACCGATCCTCCCTTCCCCCCTTCCTCCTTTCTCCTTTAT
TCCCCCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCTTCAGGC
ATCACGGCTGCCCTCTCTCCGGCGGGCACCAAGCCGATGATCCGGGTATG
GTTTGCTGCCTCTCGGAAACAACCCCCGACGCTCCCTCCTGACTTGGACG
CACGTAAGAAAGAGAAAGGAGGGAGGAAGGGAAGGAGGGAGGAAGGGAAG
GAAAGAGGGAGGGAGAAAGTGTGTTTTGGGCTGTATCCTGCCATTCATTC
ACACCCTCTCCTCCCTCCCTCCCTCCCTCCCTCCCCAGTCGAGGAAGCGC
TCAACACAATCGAAGAGCGGGTCATTGTCCTGACCAGCGCCGTTGCCGCC
GCATCCTCCTCCCCTTCTCCCTCTTCCCCTCCCTCTAATGCATCAACCTC
CTTCACTTCCTTCTCCCTCTCGGAGGGGGGATGGGGGAAGGAGGACGGGG
GGGTGGTCGACCTCCCCCCCCTTCTCGCCCTTCCTCGGCGTCTGCAGGCC
ACACACCGTCTCCTCTCTTCCCTTCGCGCTCTCCACGCACAGGAGGAAGG
GAGGGAGGGAGGGAAGGAGGGAGAGCTGCCAGCGCCCTTGGATTTGAGAG
AAGCCTTCCGAGAGAGGGACCAGAAGACGGTGCTCCAGGTAAGGAGGGAG
AGAGGGCGGATGGGAAGGGAGGAAAGCGAGGGTGCCGGGCAGACACAGGG
AAGAAGAAAAGAGGACGGGAGGGAGGGGGAAAGGGGAGGAGGAAGGGAAA
AAGTAAGAGGAAGAAAATCAAAACCAATCGTCTCTTCTTTTTCTTCTTTT
TCATTTTCAACAGTTCGAAACGGCCGTGGAGGAATGGAGCGCAACCCAAC
GCCCCGTCAACGATCTCCTTTCCTCCCCCCCTTCCTCCTTCCCTCCCTCC
TCCTCCTTCTTCTTGTTCTTCCCGCGGGAGATCTCACCAGTGGCGCGGCT
CGACGCTGCGTA
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Coding sequence (CDS) from alignment at scaffold_16:63137..64698+

>mRNA_7015 ID=mRNA_7015|Name=jgi.p|Nanoce1779_2|595289|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_16:63137..64698+ (Nannochloropsis oceanica)
ATGACAGCTGTCAGTGCTGGGAGGGAGGCTAGAGGACAAGTATCACCTTT
TTCTCTCCTCCTCTTCCAACCCCCACTCGTCCTCCTCGCTTCCTCCCAAG
CTGCGCGCCGAGGCCGCCCGTCTGGCTCTAGTGGAGGCTCAAATTTATCA
AACCCTCGAAGCCGCCGCCTTCCTCTTGGCCCTCCCAGGCATCACGGCTG
CCCTCTCTCCGGCGGGCACCAAGCCGATGATCCGGGTATGGTTTGCTGCC
TCTCGGAAACAACCCCCGACGCTCCCTCCTGAATGACAGCTGTCAGTGCT
GGGAGGGAGGCTAGAGGACAAGTATCACCTTTTTCTCTCCTCCTCTTCCA
ACCCCCACTCGTCCTCCTCGCTTCCTCCCAAGCTGCGCGCCGAGGCCGCC
CGTCTGGCTCTAGTGGAGGCTCAAATTTATCAAACCCTCGAAGCCGCCGC
CTTCCTCTTGGCCCTCCCAGGCATCACGGCTGCCCTCTCTCCGGCGGGCA
CCAAGCCGATGATCCGGGTATGGTTTGCTGCCTCTCGGAAACAACCCCCG
ACGCTCCCTCCTGAATGACAGCTGTCAGTGCTGGGAGGGAGGCTAGAGGA
CAAGTATCACCTTTTTCTCTCCTCCTCTTCCAACCCCCACTCGTCCTCCT
CGCTTCCTCCCAAGCTGCGCGCCGAGGCCGCCCGTCTGGCTCTAGTGGAG
GCTCAAATTTATCAAACCCTCGAAGCCGCCGCCTTCCTCTTGGCCCTCCC
AGGCATCACGGCTGCCCTCTCTCCGGCGGGCACCAAGCCGATGATCCGGG
TATGGTTTGCTGCCTCTCGGAAACAACCCCCGACGCTCCCTCCTGA
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Synonyms
Publications