jgi.p|Nanoce1779_2|595281, mRNA_7013 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595281
Unique NamemRNA_7013
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length711
Alignment locationscaffold_16:53176..53886 +

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Properties
Property NameValue
TranscriptId595367
TrackFilteredModels2
ProteinId595281
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:53176..53886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595281gene_7013Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595281mRNA_7013-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7013CDS_7013Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7013 ID=mRNA_7013|Name=jgi.p|Nanoce1779_2|595281|organism=Nannochloropsis oceanica|type=mRNA|length=711bp
GGGGTGGAGGGAGGGGGAATAAGGTCAAGAAAGAGGAAAGAGGGGAAGAA
GTGACTAGCTGCATCGCATCGATCATGTCCTTTTCTGACGGCCTTCAGGC
GCTTCGTGCAATTTTGTGGAAGGTGTAGGGTGGTAAAAGAGGCGGTAGGA
TACATGGGAGTCGACGCCATGTCAGACCGGAGAAGCCGCATTGCCTCGGG
AGAGTGACCCACAAACAAAACGAGGTCTGCCACGCATGCACCACTATGCA
AAATTCATTCTCGTCCCCTTCTCCACCATCACCGCGCGCCCCTCCGTTTT
TGGGGAAGATGAGTCATTCGAGGTCGGTCGAGATGCAGGGCTTTCGCTTC
AATGCAAGGCAGGTCATATGTAGTGAACTCGCTGCTGCTTCTTGTCCTGT
TACTCGCCGCACGACAACGTGACGAGGACACTACGATCCATCGATGCGAT
GGAGGGAGGATGAGAATGAACACCAAAAACAAGCGCAAAAAGAGTATTCA
TGTCTTGCATTTCCTTGTCCTCGTCATGCTTCCTACCTCCGCCTGGAGGT
GTCGAAGCAAGTGCCCCTTCCCGTTGTTCCTGTGAAGGCGAAGACAAGAT
TGATTTGCACCTCAACGACAACTAGGCCACAAAAACCAAGAATTTTTAAT
AATGATGTGTCAAAACGATGTCCTGCATGGAGCGCGATACGAGTAGAGGT
TTGGCATACCC
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protein sequence of jgi.p|Nanoce1779_2|595281

>mRNA_7013-protein ID=mRNA_7013-protein|Name=jgi.p|Nanoce1779_2|595281|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MQGRSYVVNSLLLLVLLLAARQRDEDTTIHRCDGGRMRMNTKNKRKKSIH
VLHFLVLVMLPTSAWRCRSKCPFPLFL*
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mRNA from alignment at scaffold_16:53176..53886+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7013 ID=mRNA_7013|Name=jgi.p|Nanoce1779_2|595281|organism=Nannochloropsis oceanica|type=mRNA|length=711bp|location=Sequence derived from alignment at scaffold_16:53176..53886+ (Nannochloropsis oceanica)
GGGGTGGAGGGAGGGGGAATAAGGTCAAGAAAGAGGAAAGAGGGGAAGAA
GTGACTAGCTGCATCGCATCGATCATGTCCTTTTCTGACGGCCTTCAGGC
GCTTCGTGCAATTTTGTGGAAGGTGTAGGGTGGTAAAAGAGGCGGTAGGA
TACATGGGAGTCGACGCCATGTCAGACCGGAGAAGCCGCATTGCCTCGGG
AGAGTGACCCACAAACAAAACGAGGTCTGCCACGCATGCACCACTATGCA
AAATTCATTCTCGTCCCCTTCTCCACCATCACCGCGCGCCCCTCCGTTTT
TGGGGAAGATGAGTCATTCGAGGTCGGTCGAGATGCAGGGCTTTCGCTTC
AATGCAAGGCAGGTCATATGTAGTGAACTCGCTGCTGCTTCTTGTCCTGT
TACTCGCCGCACGACAACGTGACGAGGACACTACGATCCATCGATGCGAT
GGAGGGAGGATGAGAATGAACACCAAAAACAAGCGCAAAAAGAGTATTCA
TGTCTTGCATTTCCTTGTCCTCGTCATGCTTCCTACCTCCGCCTGGAGGT
GTCGAAGCAAGTGCCCCTTCCCGTTGTTCCTGTGAAGGCGAAGACAAGAT
TGATTTGCACCTCAACGACAACTAGGCCACAAAAACCAAGAATTTTTAAT
AATGATGTGTCAAAACGATGTCCTGCATGGAGCGCGATACGAGTAGAGGT
TTGGCATACCC
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Coding sequence (CDS) from alignment at scaffold_16:53176..53886+

>mRNA_7013 ID=mRNA_7013|Name=jgi.p|Nanoce1779_2|595281|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_16:53176..53886+ (Nannochloropsis oceanica)
ATGCAAGGCAGGTCATATGTAGTGAACTCGCTGCTGCTTCTTGTCCTGTT
ACTCGCCGCACGACAACGTGACGAGGACACTACGATCCATCGATGCGATG
GAGGGAGGATGAGAATGAACACCAAAAACAAGCGCAAAAAGAGTATTCAT
GTCTTGCATTTCCTTGTCCTCGTCATGCTTCCTACCTCCGCCTGGAGGTG
TCGAAGCAAGTGCCCCTTCCCGTTGTTCCTGTGA
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Synonyms
Publications