jgi.p|Nanoce1779_2|595274, mRNA_7011 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595274
Unique NamemRNA_7011
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length416
Alignment locationscaffold_16:46241..47127 +

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Properties
Property NameValue
TranscriptId595360
TrackFilteredModels2
ProteinId595274
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:46241..47127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595274gene_7011Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595274mRNA_7011-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7011CDS_7011Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7011 ID=mRNA_7011|Name=jgi.p|Nanoce1779_2|595274|organism=Nannochloropsis oceanica|type=mRNA|length=416bp
GGCACGTGGGTGGGCAAATCCTTCGTGAAGGATTTAGAAAAGCGGAGGGA
GGGAGGGAGGGAGGGAGGCTGGGGGTACAATGTGTTCAGGTGTTCGGGGG
GCCAGGTATCGCGTCGGTTTCAAATGAAGACAAGCGTGGTGGCGAGTGTG
TGGGACGCAAGGCCGTCGTTTCAGTTGCAGTATGGAGACCAAAGGCATTT
GTTGGGAGCATTGCTCATGCGCGATGAGGTTCGAGAGGTCCAGCCTGGGC
TCTTCTTAGGCATGGGCACCTACGGGTATAGCGCGGCGAAGAGGCATCAA
GACCCTTTGCCCTTCTTATTGCGCGGGCCTTTGCAGCCGCCCAAGCCGAA
AGAGGTCCGGGAGGGCTGGCTATAGTTCTAGAACGTTACGGGGCGCCGTT
GCCCTAAACCCGGGCT
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protein sequence of jgi.p|Nanoce1779_2|595274

>mRNA_7011-protein ID=mRNA_7011-protein|Name=jgi.p|Nanoce1779_2|595274|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MKTSVVASVWDARPSFQLQYGDQRHLLGALLMRDEVREVQPGLFLGMGTY
GYSAAKRHQDPLPFLLRGPLQPPKPKEVREGWL*
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mRNA from alignment at scaffold_16:46241..47127+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7011 ID=mRNA_7011|Name=jgi.p|Nanoce1779_2|595274|organism=Nannochloropsis oceanica|type=mRNA|length=887bp|location=Sequence derived from alignment at scaffold_16:46241..47127+ (Nannochloropsis oceanica)
GGCACGTGGGTGGGCAAATCCTTCGTGAAGGATTTAGAAAAGCGGAGGGA
GGGAGGGAGGGAGGGAGGCTGGGGGTACAATGTGTTCAGGTGTTCGGGGG
GCCAGGTATCGCGTCGGTTTCAAATGAAGACAAGCGTGGTGGCGAGTGTG
TGGGACGCAAGGCCGTCGTTTCAGTTGCAGTATGGAGACCAAAGGCATTT
GTTGGGAGCATTGCTCATGTAAGGCCTTTTCCCCAATCAATAGATTTTTT
CAATCAACTCAAATGTTTTATGAATTCTCTTTAATTATTCATCCATCTTT
CTAGTCCATCGATCTATCGCTGTATATTTCATTTATTTTCTATTTATGAA
TGTGTCATCGTTTAAATTGTCATGTGATTTGCAATAGCCGACGCCATTCA
AGTCTCTTTTCATCCACTCTCTTCGTTTAACACAACACTTTTGCAGGCGC
GATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGGTAAGCAAAATAG
CATACATGTATACAGCATACACCAGGTCTTACCCAAGCGTGCTTCCTTCC
CTCCCTAGACCCCTGAAGCACTGCCGCGTGGCGATAGATGGAGTCTAGTG
CATGCTATTTAGACCTGGTGCATTAATAATCATAACGCGTGGTTCACGTC
CATCCACGCATCAATCACACAATAAATCGAAGCTACTCCATTCATCTCAC
CCCAGATCATATTTCCATTTTTCTCCTCAGGCATGGGCACCTACGGGTAT
AGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTATTGCGCGGGCC
TTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGGCTATAGTTCT
AGAACGTTACGGGGCGCCGTTGCCCTAAACCCGGGCT
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Coding sequence (CDS) from alignment at scaffold_16:46241..47127+

>mRNA_7011 ID=mRNA_7011|Name=jgi.p|Nanoce1779_2|595274|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_16:46241..47127+ (Nannochloropsis oceanica)
ATGAAGACAAGCGTGGTGGCGAGTGTGTGGGACGCAAGGCCGTCGTTTCA
GTTGCAGTATGGAGACCAAAGGCATTTGTTGGGAGCATTGCTCATGCGCG
ATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGGCATGGGCACCTAC
GGGTATAGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTATTGCG
CGGGCCTTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGGCTAT
AGATGAAGACAAGCGTGGTGGCGAGTGTGTGGGACGCAAGGCCGTCGTTT
CAGTTGCAGTATGGAGACCAAAGGCATTTGTTGGGAGCATTGCTCATGCG
CGATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGGCATGGGCACCT
ACGGGTATAGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTATTG
CGCGGGCCTTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGGCT
ATAGATGAAGACAAGCGTGGTGGCGAGTGTGTGGGACGCAAGGCCGTCGT
TTCAGTTGCAGTATGGAGACCAAAGGCATTTGTTGGGAGCATTGCTCATG
CGCGATGAGGTTCGAGAGGTCCAGCCTGGGCTCTTCTTAGGCATGGGCAC
CTACGGGTATAGCGCGGCGAAGAGGCATCAAGACCCTTTGCCCTTCTTAT
TGCGCGGGCCTTTGCAGCCGCCCAAGCCGAAAGAGGTCCGGGAGGGCTGG
CTATAG
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Synonyms
Publications