jgi.p|Nanoce1779_2|573839, mRNA_701 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573839
Unique NamemRNA_701
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1573
Alignment locationscaffold_2:224480..226215 -

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Properties
Property NameValue
TranscriptId573925
TrackFilteredModels2
ProteinId573839
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:224480..226215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573839gene_701Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573839mRNA_701-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_701CDS_701Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_701 ID=mRNA_701|Name=jgi.p|Nanoce1779_2|573839|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp
AGGCAGCGTAGTGTGACCTTGTCCTCCACGGCACAGGCGCGGTAGTTTAG
CGCTCAGGAGGTCACAAGAGACGAAAAATCAGCATCATCATCGAGGGACC
GGAGCAACATGGGCAAGCTCATGGCGCTCTTGCTGCTCTCTTCCGCCACG
GCCTTCCTCGTGAAGCCTCGTCCCTCTCTTTCCTCTGGCACTGCTTGTAT
CAATAGGAGGCGCCCTCTTGCCACGCTCGCAACTGCTGCCGTCCCCACCA
GCACCAGCCCTGCGCACTCGCCTGTGCCCTCGACTCTCACCATCCTCGAC
GGCGACCGCCATCTCCTATCAACCAGAAAGCAGACCCTCTTAGAGCTCGG
TACGGCGGGTTTGGAGGATGTTTTGCGAGGTAAGGGGAGGGCCCGCATGG
TCTGGCGCGCCGTCCGGGAAGGCCTCGATCCATATCAAACCGACCCCGAC
GCTTCGCTCTACGACGGACGAATTACGAGAAAAACTCGGAATTTGCTGCA
AGAACGTGTCCAAGTCCCGCATTGGACCGTAGCGGAGACGACACGTAGCC
CCTGTGGTACGGTCAAGCTTTTGATTCGATTGCGTGATGGGCTTTTGGTA
GAGAGCGTGGTAATCCCTAGCGCTGAGAAAACTGTCAATGGCAAAGCCTC
TGCATCTACTGTGGCGTCTCGTTCCACGGTCTGTGTTTCCTCGCAGGTGG
GCTGTGCGCAGGCATGTGCGTTTTGTTTGACGGGGATGATGGGATTCATT
CGGCATCTAAAAGCTGACGAAATCTTGATGCAGCTTCAGTTAGCGTTGCA
GGTGGCGAGGAAGGACGGGTTACCCGACGTGCGAAACGTGGTTTTTATGG
GTATGGGCGAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCAA
GCCATGACAGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCGT
CTCTACCGTCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATGC
CTAAGGCCAAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAGG
CGGGCCTTGGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGGC
TTTTAGGGAGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAAT
GTACGTTAATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTTG
GTGGATTTCCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCAT
CCCGTACAATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGACA
CTATTTTGAATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAACC
TTTGTAAGGACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGTT
GGCAACTGAGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAGA
AGATGCGAAAGAGTAAAAGTAAAAGGCACGAGGAAGTCGTATAATCGAGC
AGGAGCAGGGCAGCGCTTGTAAATCTGTACAAAAAGAAATAAAAGTAACG
ACCAATTAGAGACAGAGAGAAAA
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protein sequence of jgi.p|Nanoce1779_2|573839

>mRNA_701-protein ID=mRNA_701-protein|Name=jgi.p|Nanoce1779_2|573839|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MGKLMALLLLSSATAFLVKPRPSLSSGTACINRRRPLATLATAAVPTSTS
PAHSPVPSTLTILDGDRHLLSTRKQTLLELGTAGLEDVLRGKGRARMVWR
AVREGLDPYQTDPDASLYDGRITRKTRNLLQERVQVPHWTVAETTRSPCG
TVKLLIRLRDGLLVESVVIPSAEKTVNGKASASTVASRSTVCVSSQVGCA
QACAFCLTGMMGFIRHLKADEILMQLQLALQVARKDGLPDVRNVVFMGMG
EPLNNPHAVSQALQAMTDAHGFALSPNFVTVSTVAPSPAHIRRFLGMPKA
KIAWSVHGATDVMRRALVPTTSATMVELREAFREVMAQRGDTDIFIECTL
IDGVNDALADAEALVDFLRPFGRESVKVNLIPYNDTGVNGWKPSKWDTIL
NFQAYVRTQGGWPTFVRTPRGREESSACGQLATEIAARGTDGGNGG*
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mRNA from alignment at scaffold_2:224480..226215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_701 ID=mRNA_701|Name=jgi.p|Nanoce1779_2|573839|organism=Nannochloropsis oceanica|type=mRNA|length=1736bp|location=Sequence derived from alignment at scaffold_2:224480..226215- (Nannochloropsis oceanica)
AGGCAGCGTAGTGTGACCTTGTCCTCCACGGCACAGGCGCGGTAGTTTAG
CGCTCAGGAGGTCACAAGAGACGAAAAATCAGCATCATCATCGAGGGACC
GGAGCAACATGGGCAAGCTCATGGCGCTCTTGCTGCTCTCTTCCGCCACG
GCCTTCCTCGTGAAGCCTCGTCCCTCTCTTTCCTCTGGCACTGCTTGTAT
CAATAGGAGGCGCCCTCTTGCCACGCTCGCAACTGCTGCCGTCCCCACCA
GCACCAGCCCTGCGCACTCGCCTGTGCCCTCGACTCTCACCATCCTCGAC
GGCGACCGCCATCTCCTATCAACCAGAAAGCAGACCCTCTTAGAGCTCGG
TACGGCGGGTTTGGAGGATGTTTTGCGAGGTAAGGGGAGGGCCCGCATGG
TCTGGCGCGCCGTCCGGGAAGGCCTCGATCCATATCAAACCGACCCCGAC
GCTTCGCTCTACGACGGACGAATTACGAGAAAAACTCGGAATTTGCTGCA
AGAACGTGTCCAAGTCCCGCATTGGACCGTAGCGGAGACGACACGTAGCC
CCTGTGGTACGGTCAAGCTTTTGATTCGATTGCGTGATGGGCTTTTGGTA
GAGAGCGTGGTAATCCCTAGCGCTGAGAAAACTGTCAATGGCAAAGCCTC
TGCATCTACTGTGGCGTCTCGTTCCACGGTCTGTGTTTCCTCGCAGGTGG
GCTGTGCGCAGGCATGTGCGTTTTGTTTGACGGGGATGATGGGATTCATT
CGGCATCTAAAAGCTGACGAAATCTTGATGCAGCTTCAGTTAGCGTTGCA
GGTGGCGAGGAAGGACGGGTTACCCGACGTGCGAAACGTGGTTTTTATGG
TGAGTGGTGCTATTTAAATACCAGGCGGTCTAAGTTGATAAAAATCTCTT
CGGGTGCGGGATGTTTTGTTTACATCATCCGATCCCCATTTTGCGCTCAG
GCCACCACTTATTTCTCTCCCACCTCCTTTTCCACTGACACATCTGAAAA
CACAACAAATAGGGTATGGGCGAGCCTCTCAACAACCCCCACGCCGTCTC
CCAGGCACTCCAAGCCATGACAGACGCCCATGGCTTCGCTCTCTCTCCCA
ACTTTGTCACCGTCTCTACCGTCGCTCCTTCTCCCGCCCACATCCGGCGT
TTCCTAGGCATGCCTAAGGCCAAAATCGCCTGGTCTGTCCACGGAGCAAC
AGACGTCATGAGGCGGGCCTTGGTCCCTACTACTAGTGCAACGATGGTCG
AGTTGCGGGAGGCTTTTAGGGAGGTGATGGCCCAGAGGGGAGATACAGAC
ATTTTTATCGAATGTACGTTAATTGACGGTGTAAATGATGCGTTGGCCGA
CGCGGAGGCGTTGGTGGATTTCCTACGGCCATTTGGGAGAGAGAGTGTGA
AAGTAAATCTCATCCCGTACAATGATACGGGGGTGAATGGATGGAAACCC
TCGAAATGGGACACTATTTTGAATTTTCAAGCTTACGTGCGGACTCAGGG
CGGATGGCCAACCTTTGTAAGGACGCCACGGGGAAGGGAGGAATCGAGCG
CCTGTGGCCAGTTGGCAACTGAGATAGCGGCGCGAGGTACTGATGGTGGA
AATGGGGGCTAGAAGATGCGAAAGAGTAAAAGTAAAAGGCACGAGGAAGT
CGTATAATCGAGCAGGAGCAGGGCAGCGCTTGTAAATCTGTACAAAAAGA
AATAAAAGTAACGACCAATTAGAGACAGAGAGAAAA
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Coding sequence (CDS) from alignment at scaffold_2:224480..226215-

>mRNA_701 ID=mRNA_701|Name=jgi.p|Nanoce1779_2|573839|organism=Nannochloropsis oceanica|type=CDS|length=2682bp|location=Sequence derived from alignment at scaffold_2:224480..226215- (Nannochloropsis oceanica)
GGTATGGGCGAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCA
AGCCATGACAGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCG
TCTCTACCGTCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATG
CCTAAGGCCAAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAG
GCGGGCCTTGGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGG
CTTTTAGGGAGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAA
TGTACGTTAATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTT
GGTGGATTTCCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCA
TCCCGTACAATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGAC
ACTATTTTGAATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAAC
CTTTGTAAGGACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGT
TGGCAACTGAGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAG
ATGGGCAAGCTCATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCT
CGTGAAGCCTCGTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGA
GGCGCCCTCTTGCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGC
CCTGCGCACTCGCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCG
CCATCTCCTATCAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGG
GTTTGGAGGATGTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGC
GCCGTCCGGGAAGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCT
CTACGACGGACGAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTG
TCCAAGTCCCGCATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGT
ACGGTCAAGCTTTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGT
GGTAATCCCTAGCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTA
CTGTGGCGTCTCGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCG
CAGGCATGTGCGTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCT
AAAAGCTGACGAAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGA
GGAAGGACGGGTTACCCGACGTGCGAAACGTGGTTTTTATGGGTATGGGC
GAGCCTCTCAACAACCCCCACGCCGTCTCCCAGGCACTCCAAGCCATGAC
AGACGCCCATGGCTTCGCTCTCTCTCCCAACTTTGTCACCGTCTCTACCG
TCGCTCCTTCTCCCGCCCACATCCGGCGTTTCCTAGGCATGCCTAAGGCC
AAAATCGCCTGGTCTGTCCACGGAGCAACAGACGTCATGAGGCGGGCCTT
GGTCCCTACTACTAGTGCAACGATGGTCGAGTTGCGGGAGGCTTTTAGGG
AGGTGATGGCCCAGAGGGGAGATACAGACATTTTTATCGAATGTACGTTA
ATTGACGGTGTAAATGATGCGTTGGCCGACGCGGAGGCGTTGGTGGATTT
CCTACGGCCATTTGGGAGAGAGAGTGTGAAAGTAAATCTCATCCCGTACA
ATGATACGGGGGTGAATGGATGGAAACCCTCGAAATGGGACACTATTTTG
AATTTTCAAGCTTACGTGCGGACTCAGGGCGGATGGCCAACCTTTGTAAG
GACGCCACGGGGAAGGGAGGAATCGAGCGCCTGTGGCCAGTTGGCAACTG
AGATAGCGGCGCGAGGTACTGATGGTGGAAATGGGGGCTAGATGGGCAAG
CTCATGGCGCTCTTGCTGCTCTCTTCCGCCACGGCCTTCCTCGTGAAGCC
TCGTCCCTCTCTTTCCTCTGGCACTGCTTGTATCAATAGGAGGCGCCCTC
TTGCCACGCTCGCAACTGCTGCCGTCCCCACCAGCACCAGCCCTGCGCAC
TCGCCTGTGCCCTCGACTCTCACCATCCTCGACGGCGACCGCCATCTCCT
ATCAACCAGAAAGCAGACCCTCTTAGAGCTCGGTACGGCGGGTTTGGAGG
ATGTTTTGCGAGGTAAGGGGAGGGCCCGCATGGTCTGGCGCGCCGTCCGG
GAAGGCCTCGATCCATATCAAACCGACCCCGACGCTTCGCTCTACGACGG
ACGAATTACGAGAAAAACTCGGAATTTGCTGCAAGAACGTGTCCAAGTCC
CGCATTGGACCGTAGCGGAGACGACACGTAGCCCCTGTGGTACGGTCAAG
CTTTTGATTCGATTGCGTGATGGGCTTTTGGTAGAGAGCGTGGTAATCCC
TAGCGCTGAGAAAACTGTCAATGGCAAAGCCTCTGCATCTACTGTGGCGT
CTCGTTCCACGGTCTGTGTTTCCTCGCAGGTGGGCTGTGCGCAGGCATGT
GCGTTTTGTTTGACGGGGATGATGGGATTCATTCGGCATCTAAAAGCTGA
CGAAATCTTGATGCAGCTTCAGTTAGCGTTGCAGGTGGCGAGGAAGGACG
GGTTACCCGACGTGCGAAACGTGGTTTTTATG
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Synonyms
Publications