jgi.p|Nanoce1779_2|595267, mRNA_7009 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595267
Unique NamemRNA_7009
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length496
Alignment locationscaffold_16:39529..40160 +

Link to JBrowse

Properties
Property NameValue
TranscriptId595353
TrackFilteredModels2
ProteinId595267
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:39529..40160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595267gene_7009Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595267mRNA_7009-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7009CDS_7009Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7009 ID=mRNA_7009|Name=jgi.p|Nanoce1779_2|595267|organism=Nannochloropsis oceanica|type=mRNA|length=496bp
GGAGGGAGGGAGGGAGGGAGGGAATGAGAGAGGGAGGGGGGGGATAATAC
GACTGCTGCTTTCGTAGGCTATTCGATTTCTTCTAGTTCTGTTTGGCCAA
TTAACACAGGCTTCTTGCCTTCTCACTCAACCAACCCTTCCTCCCTCCCT
TAGGAAAATGTGGAAGATCGCCACGAGCGTTTCGACCGCATCATGACAGG
AATGCAGGCCCTCCTCACACCGACCCAAAGAGCTAAGCTCGTGTTATGGG
CCACCAGGAATGAGCCCCTCCTCTCCTCCTCCATTCCGGGTTTCACCAAG
AACACTTTCGGGATGGAGCTAACCACTGCCGCTGTCGCCACCCCCACTGC
CTCTCCCTCCCTCCCCTCCTCCCTCCCACCCTCGGCGGGATTGACACCGG
CGCTCGAGGTAGAAGCCAACGCCCTCCCTTTGGACTTGCCGCCTCAAGGA
GGAGGAAGGGAGGGGATGGGGGGAGAACAGCAGCAGCAGTAGCCGT
back to top

protein sequence of jgi.p|Nanoce1779_2|595267

>mRNA_7009-protein ID=mRNA_7009-protein|Name=jgi.p|Nanoce1779_2|595267|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MTGMQALLTPTQRAKLVLWATRNEPLLSSSIPGFTKNTFGMELTTAAVAT
PTASPSLPSSLPPSAGLTPALEVEANALPLDLPPQGGGREGMGGEQQQQ*
back to top

mRNA from alignment at scaffold_16:39529..40160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7009 ID=mRNA_7009|Name=jgi.p|Nanoce1779_2|595267|organism=Nannochloropsis oceanica|type=mRNA|length=632bp|location=Sequence derived from alignment at scaffold_16:39529..40160+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAATGAGAGAGGGAGGGGGGGGATAATAC
GACTGCTGCTTTCGTAGGCTATTCGATTTCTTCTAGTTCTGTTTGGCCAA
TTAACACAGGCTTCTTGCCTTCTCACTCAACCAACCCTTCCTCCCTCCCT
TAGGAAAATGTGGAAGATCGCCACGAGCGTTTCGACCGCATCATGACAGG
AATGCAGGCCCTCCTCACACCGACCCAAAGAGCTAAGCTCGTGTTATGGG
CCACCAGGTGAGGAATCAGTAGAGGGAGGGAGGGAGGGAGGACAAGCTTG
ACAAGTCCATCCCACTCGGAGAGCAAATATTAAAATGTCCATTCTTCTTT
CTTACATGCCCCTCCCTCCGTTCCTCTCCCGTCCCTCCCTCAGGAATGAG
CCCCTCCTCTCCTCCTCCATTCCGGGTTTCACCAAGAACACTTTCGGGAT
GGAGCTAACCACTGCCGCTGTCGCCACCCCCACTGCCTCTCCCTCCCTCC
CCTCCTCCCTCCCACCCTCGGCGGGATTGACACCGGCGCTCGAGGTAGAA
GCCAACGCCCTCCCTTTGGACTTGCCGCCTCAAGGAGGAGGAAGGGAGGG
GATGGGGGGAGAACAGCAGCAGCAGTAGCCGT
back to top

Coding sequence (CDS) from alignment at scaffold_16:39529..40160+

>mRNA_7009 ID=mRNA_7009|Name=jgi.p|Nanoce1779_2|595267|organism=Nannochloropsis oceanica|type=CDS|length=600bp|location=Sequence derived from alignment at scaffold_16:39529..40160+ (Nannochloropsis oceanica)
ATGACAGGAATGCAGGCCCTCCTCACACCGACCCAAAGAGCTAAGCTCGT
GTTATGGGCCACCAGGAATGAGCCCCTCCTCTCCTCCTCCATTCCGGGTT
TCACCAAGAACACTTTCGGGATGGAGCTAACCACTGCCGCTGTCGCCACC
CCCACTGCCTCTCCCTCCCTCCCCTCCTCCCTCCCACCCTCGGCGGGATT
GACACCGGCGCTCGAGGTAGAAGCCAACGCCCTCCCTTTGGACTTGCCGC
CTCAAGGAGGAGGAAGGGAGGGGATGGGGGGAGAACAGCAGCAGCAGTAG
ATGACAGGAATGCAGGCCCTCCTCACACCGACCCAAAGAGCTAAGCTCGT
GTTATGGGCCACCAGGAATGAGCCCCTCCTCTCCTCCTCCATTCCGGGTT
TCACCAAGAACACTTTCGGGATGGAGCTAACCACTGCCGCTGTCGCCACC
CCCACTGCCTCTCCCTCCCTCCCCTCCTCCCTCCCACCCTCGGCGGGATT
GACACCGGCGCTCGAGGTAGAAGCCAACGCCCTCCCTTTGGACTTGCCGC
CTCAAGGAGGAGGAAGGGAGGGGATGGGGGGAGAACAGCAGCAGCAGTAG
back to top
Synonyms
Publications