jgi.p|Nanoce1779_2|595252, mRNA_7006 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595252
Unique NamemRNA_7006
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length508
Alignment locationscaffold_16:27736..29046 -

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Properties
Property NameValue
TranscriptId595338
TrackFilteredModels2
ProteinId595252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:27736..29046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595252gene_7006Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595252mRNA_7006-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7006CDS_7006Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7006 ID=mRNA_7006|Name=jgi.p|Nanoce1779_2|595252|organism=Nannochloropsis oceanica|type=mRNA|length=508bp
ACAGAACGACGTAGGTGCACGGACGGGCAGGGCCAATTTATTCAGGGAAC
GCCCGCGTACAGCGTCCGGCTACTGAGGCAAAAGACAACAAGACAGCAGA
GTCCCGACTTTCGTTCTCAGCACCATGGCCAGTCGGATCGAGTATTCGGA
GAAGTACATGGACGACAAGCATGAGTACCGGCACGTCATTCTACCCAAGG
AGCTAGCCCGGTCCTTGCCCAAGCAACGCCTGCTCACTGAGACTGAATGG
CGAGGCATCGGCGTGCAGCAATCAAGGGGCTGGCAGCATTATGCCATCCA
TCGGCCAGAGCCCCACATTCTCCTCTTCCGGCGCCCCCTGGGTACAGACC
CTGTCACTGGCAAGGTCGTCGCGGAGCTAGAACGGGAGGCCAAGGAGGCC
TATGCCAAGACCATGAATGGCGCCGTGCAACGAAAGTAGAGGGGAGGGAA
GGAGGGAGGGAGGGAGGGAGGGAATGGAATGTAAGCATTACGCATGATGT
ACTGTAGG
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protein sequence of jgi.p|Nanoce1779_2|595252

>mRNA_7006-protein ID=mRNA_7006-protein|Name=jgi.p|Nanoce1779_2|595252|organism=Nannochloropsis oceanica|type=polypeptide|length=105bp
MASRIEYSEKYMDDKHEYRHVILPKELARSLPKQRLLTETEWRGIGVQQS
RGWQHYAIHRPEPHILLFRRPLGTDPVTGKVVAELEREAKEAYAKTMNGA
VQRK*
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mRNA from alignment at scaffold_16:27736..29046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7006 ID=mRNA_7006|Name=jgi.p|Nanoce1779_2|595252|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp|location=Sequence derived from alignment at scaffold_16:27736..29046- (Nannochloropsis oceanica)
ACAGAACGACGTAGGTGCACGGACGGGCAGGGCCAATTTATTCAGGGAAC
GCCCGCGTACAGCGTCCGGCTACTGAGGCAAAAGGTAAGGAGGCGAGGGA
GGACGTGGAAAGGGTGGGTGTCGAAGAGGACCGGGAAGCAGTGCATTTGT
GGGGTAAGGAGCGTGTTTTCATACGCTGGTTTCCTGGCCGATGCTAGAAT
GAAAGAAGGGACGAAACGGCATGGAGCTGGACAATGAATAAACTTGCCAG
CCGCCCATTGCGTCCTCCCACCACCCTCTCCCCCCCACTCACCGTTTCCT
CCTCCCCCTCCGATTTGCACCCCGCGAAAGACAACAAGACAGCAGAGTCC
CGACTTTCGTTCTCAGCACCATGGCCAGTCGGATCGAGTATTCGGAGAAG
TACATGGACGACAAGCATGAGTACCGGCACGTCATTCTACCCAAGGTACG
TCTTGGCTTCCTTCCCGCCCTCCTTCCCTCCCTCCTTCCCTCCCCCCCTT
TATTCCCTTCTCATTTTCCTGTTTTTTCTTCCTGGCTTTTATTTCGACAT
TTCTCCTCCACCTTATTTCCTTAAATCCCTCGCGCGCGGTATATTCACGT
CACACATCCATGGTCACACTCACCCACTCCCTCCCTCCCTCCCTCCCTCC
CCATCACAGGAGCTAGCCCGGTCCTTGCCCAAGCAACGCCTGCTCACTGA
GACTGAATGGCGAGGCATCGGCGTGCAGCAATCAAGGGGCTGGCAGCATT
ATGCCATCCATCGGTACGACGTCCTCCCTCCCTCCCTCCCTCCTCGCTCC
TCGGCACCGACTCATCCTTCCTCCCTGCCTCCCACCCTCTCGCCCCTCCC
TTAGGCCAGAGCCCCACATTCTCCTCTTCCGGCGCCCCCTGGGTACAGAC
CCTGTCACTGGCAAGGTAGGAGGGAGGGAGGGAGGGAGGAGGGAGATGAG
ATAATGCGTATCCATTTCTCTTTTTTTGGTCTTTGGATTGTCGAGAAGGC
GGAGCGTACCTGTTGAATCTCTTTATCATTACAGATTCACTTTGGGATCA
CACACAGTTACACCCACCTCCAGCCCTCCTGCCCTCCCTCCCCTTTTCTA
GTCATCACACTGCTCCAATTTCACCCGTTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTAGGTCGTCGCGGAGCTAGAACGGGAGGCCAAGGAG
GCCTATGCCAAGACCATGAATGGCGCCGTGCAACGAAAGTAGAGGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGGAATGGAATGTAAGCATTACGCATGA
TGTACTGTAGG
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Coding sequence (CDS) from alignment at scaffold_16:27736..29046-

>mRNA_7006 ID=mRNA_7006|Name=jgi.p|Nanoce1779_2|595252|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_16:27736..29046- (Nannochloropsis oceanica)
GTCGTCGCGGAGCTAGAACGGGAGGCCAAGGAGGCCTATGCCAAGACCAT
GAATGGCGCCGTGCAACGAAAGTAGGCCAGAGCCCCACATTCTCCTCTTC
CGGCGCCCCCTGGGTACAGACCCTGTCACTGGCAAGGAGCTAGCCCGGTC
CTTGCCCAAGCAACGCCTGCTCACTGAGACTGAATGGCGAGGCATCGGCG
TGCAGCAATCAAGGGGCTGGCAGCATTATGCCATCCATCGATGGCCAGTC
GGATCGAGTATTCGGAGAAGTACATGGACGACAAGCATGAGTACCGGCAC
GTCATTCTACCCAAGGTCGTCGCGGAGCTAGAACGGGAGGCCAAGGAGGC
CTATGCCAAGACCATGAATGGCGCCGTGCAACGAAAGTAGGCCAGAGCCC
CACATTCTCCTCTTCCGGCGCCCCCTGGGTACAGACCCTGTCACTGGCAA
GGAGCTAGCCCGGTCCTTGCCCAAGCAACGCCTGCTCACTGAGACTGAAT
GGCGAGGCATCGGCGTGCAGCAATCAAGGGGCTGGCAGCATTATGCCATC
CATCGATGGCCAGTCGGATCGAGTATTCGGAGAAGTACATGGACGACAAG
CATGAGTACCGGCACGTCATTCTACCCAAGGTCGTCGCGGAGCTAGAACG
GGAGGCCAAGGAGGCCTATGCCAAGACCATGAATGGCGCCGTGCAACGAA
AGTAGGCCAGAGCCCCACATTCTCCTCTTCCGGCGCCCCCTGGGTACAGA
CCCTGTCACTGGCAAGGAGCTAGCCCGGTCCTTGCCCAAGCAACGCCTGC
TCACTGAGACTGAATGGCGAGGCATCGGCGTGCAGCAATCAAGGGGCTGG
CAGCATTATGCCATCCATCGATGGCCAGTCGGATCGAGTATTCGGAGAAG
TACATGGACGACAAGCATGAGTACCGGCACGTCATTCTACCCAAGGTCGT
CGCGGAGCTAGAACGGGAGGCCAAGGAGGCCTATGCCAAGACCATGAATG
GCGCCGTGCAACGAAAGTAGGCCAGAGCCCCACATTCTCCTCTTCCGGCG
CCCCCTGGGTACAGACCCTGTCACTGGCAAGGAGCTAGCCCGGTCCTTGC
CCAAGCAACGCCTGCTCACTGAGACTGAATGGCGAGGCATCGGCGTGCAG
CAATCAAGGGGCTGGCAGCATTATGCCATCCATCGATGGCCAGTCGGATC
GAGTATTCGGAGAAGTACATGGACGACAAGCATGAGTACCGGCACGTCAT
TCTACCCAAG
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Synonyms
Publications