jgi.p|Nanoce1779_2|595251, mRNA_7005 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595251
Unique NamemRNA_7005
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length374
Alignment locationscaffold_16:27447..27820 +

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Properties
Property NameValue
TranscriptId595337
TrackFilteredModels2
ProteinId595251
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:27447..27820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595251gene_7005Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595251mRNA_7005-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7005CDS_7005Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7005 ID=mRNA_7005|Name=jgi.p|Nanoce1779_2|595251|organism=Nannochloropsis oceanica|type=mRNA|length=374bp
GATGGTCGTTACGATAGTCGTTGTCGTTCTTGTTGGAACGAGCTTTTCCG
CGCCATCCTTTACCCATCCTATCGCCCTCTTCTCCCTTCTCTTTTTTTAC
CACCGTCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTTCCTC
CCCAGTGCAGCAAGACGTGGACGCTTGCTACCATCATTCCTCCCTCCTCA
GCATTCCTATCTATTGTCTCCATCAAGACCAGCCGAAGATCGGATCTCTC
CCCTCCCTGCCTCCTTCCCTCCCTCCCTCGATCACGACACCTACAGTACA
TCATGCGTAATGCTTACATTCCATTCCCTCCCTCCCTCCCTCCCTCCTTC
CCTCCCCTCTACTTTCGTTGCACG
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protein sequence of jgi.p|Nanoce1779_2|595251

>mRNA_7005-protein ID=mRNA_7005-protein|Name=jgi.p|Nanoce1779_2|595251|organism=Nannochloropsis oceanica|type=polypeptide|length=103bp
MVVTIVVVVLVGTSFSAPSFTHPIALFSLLFFYHRLPSLPPSLPPSFPSS
PVQQDVDACYHHSSLLSIPIYCLHQDQPKIGSLPSLPPSLPPSITTPTVH
HA*
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mRNA from alignment at scaffold_16:27447..27820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7005 ID=mRNA_7005|Name=jgi.p|Nanoce1779_2|595251|organism=Nannochloropsis oceanica|type=mRNA|length=374bp|location=Sequence derived from alignment at scaffold_16:27447..27820+ (Nannochloropsis oceanica)
GATGGTCGTTACGATAGTCGTTGTCGTTCTTGTTGGAACGAGCTTTTCCG
CGCCATCCTTTACCCATCCTATCGCCCTCTTCTCCCTTCTCTTTTTTTAC
CACCGTCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTTCCTC
CCCAGTGCAGCAAGACGTGGACGCTTGCTACCATCATTCCTCCCTCCTCA
GCATTCCTATCTATTGTCTCCATCAAGACCAGCCGAAGATCGGATCTCTC
CCCTCCCTGCCTCCTTCCCTCCCTCCCTCGATCACGACACCTACAGTACA
TCATGCGTAATGCTTACATTCCATTCCCTCCCTCCCTCCCTCCCTCCTTC
CCTCCCCTCTACTTTCGTTGCACG
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Coding sequence (CDS) from alignment at scaffold_16:27447..27820+

>mRNA_7005 ID=mRNA_7005|Name=jgi.p|Nanoce1779_2|595251|organism=Nannochloropsis oceanica|type=CDS|length=309bp|location=Sequence derived from alignment at scaffold_16:27447..27820+ (Nannochloropsis oceanica)
ATGGTCGTTACGATAGTCGTTGTCGTTCTTGTTGGAACGAGCTTTTCCGC
GCCATCCTTTACCCATCCTATCGCCCTCTTCTCCCTTCTCTTTTTTTACC
ACCGTCTTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCTTCCCTTCCTCC
CCAGTGCAGCAAGACGTGGACGCTTGCTACCATCATTCCTCCCTCCTCAG
CATTCCTATCTATTGTCTCCATCAAGACCAGCCGAAGATCGGATCTCTCC
CCTCCCTGCCTCCTTCCCTCCCTCCCTCGATCACGACACCTACAGTACAT
CATGCGTAA
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Synonyms
Publications