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Properties
| Property Name | Value |
|---|
| TranscriptId | 595333 |
| Track | FilteredModels2 |
| ProteinId | 595247 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:21718..23483 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7004 ID=mRNA_7004|Name=jgi.p|Nanoce1779_2|595247|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp
GGGGAAAGGAAGCGTAACCATTGCCGTCCTCCACAGCTTCCGATGAGAGA
AGACCACGCTTGTCGATCATGGCGAGAGCTGTCGTGAAGGGAGAGAGGGG
GGGCCGTATTATTGCAGGGGCATAAGATTCCAGCGAGCGAGTTTGGCGTG
CCTGTCTGTGAGGCCGTGAGGTTATTGATACCCACGCTCCACGATTGCCT
TCTAAAGCAGAGGCACAACAAGGGCTGACCGAGGCTCAACGCATCGTGAC
GAGGAGGCACCGTTGTTTGCTGATGTGTTTGTGCGCGTGTGTGTCTGTAG
ACAGAAGGGAGATCGAAAAAGAAGGCATCACACGAGCGATGATGGCGATG
TCGTTTCCGCGTTACAAAGTAAGCACAAAAGCACATTTGCAAGCAATGCA
AAATGCAAAATGTTACAACGTCGGATCCCTCTCACTAGCTTTCTTTCTCC
TCTTCCGCCTCCTCCTAATGCTGTTGATCGAATTATTGCAACTGCTGAAA
GTGCTCGTGCTGCTGCTCTTCGTGGGAAAGATGGAGGGCTTTCTCTGTCT
CCCCCTCCCCCTCCTGTTGCTGCTTCTGCCGCTCCTACTCCTCCCACTCT
TACTCTTCCTCGACCCTTTCCGGTTTTGGTCCTGTCTCCTCTTACCTCTC
CCCCTGCTGCCTGTGCTCGTGCTGCTGCTGCTGGTACCAGTGTCATCACT
CGTATTCGTGCTGCTTCAGCTGATTCGGCTGTCCTTATTCTTTTTCCTCT
TCTCCTCCCCCTCCTCAAAGGATCGTGAGTATGTGTGGAGAGCAAGATAC
CTCATTTAGCGTCAAACTATATCGTTGCTGCCGTGGAAAAATGATCACCT
AGTAGCTGATAATTGCCTGGTGTTTTTTTGGGTATTTTTGCAACAGAAGC
GGCAGCAGTTTCGCCCCCTGAGCGTGCTGAACTTGCTGCGATGGCGCTTA
GGCGTCTTGCGATACTTGATGCATCGACGAGGCCCCGATCGAGGAGTGGA
GTGCTTCGCGAACACTCGGGTACGCTTGGGCGTACTGCGAGAAGGGGTGC
GGATCTTCTTCTTCCTGTAATAGGAAAGCATTGCGTTGACAATGGCATTC
CTGTCACCGGGGTGAGCTTTGCGCCACTGCTTGAAATGTGTCATCAATTT
GTTTGCCATTTATTTTTTAATAAAGAGAGATAAGGTAAAGACGTAATATA
TTCAAAGCACTTGTTTTGGAAAATGGATGTCATGAGGGAAATAGCGCGAC
GAGTAAGCTCACAGGATTCCCCAGTGACACCGCCATCTCCAAGGCGCCGT
GACGAAGCCATGGGATCTATTATACATGAAGACTTGTACAGCGTACAGAC
GATCCCTGGAAATGGCGATTGTGCATGATTCACAGCAACTATAGATGACT
AGAAAAGGAGAATAGAGGATATGTGTATTCACTTATTGATGATTAGGATG
CATAGCCGTTGTACAACACGCTCACAATCCGTAGATTGGATGATGCATAT
ACAATGTATAATGACTAGAAATGACTATAACAAGGAGAATAGATGGATTG
TATATGGCTACGATGTATGACCAGGAAAAAGAAATGCAGGAAAACACAA back to topprotein sequence of jgi.p|Nanoce1779_2|595247 >mRNA_7004-protein ID=mRNA_7004-protein|Name=jgi.p|Nanoce1779_2|595247|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MCLCACVSVDRREIEKEGITRAMMAMSFPRYKVSTKAHLQAMQNAKCYNV
GSLSLAFFLLFRLLLMLLIELLQLLKVLVLLLFVGKMEGFLCLPLPLLLL
LLPLLLLPLLLFLDPFRFWSCLLLPLPLLPVLVLLLLVPVSSLVFVLLQL
IRLSLFFFLFSSPSSKDREYVWRARYLI* back to topmRNA from alignment at scaffold_16:21718..23483- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7004 ID=mRNA_7004|Name=jgi.p|Nanoce1779_2|595247|organism=Nannochloropsis oceanica|type=mRNA|length=1766bp|location=Sequence derived from alignment at scaffold_16:21718..23483- (Nannochloropsis oceanica)
GGGGAAAGGAAGCGTAACCATTGCCGTCCTCCACAGCTTCCGATGAGAGA
AGACCACGCTTGTCGATCATGGCGAGAGCTGTCGTGAAGGGAGAGAGGGG
GGGCCGTATTATTGCAGGGGCATAAGATTCCAGCGAGCGAGTTTGGCGTG
CCTGTCTGTGAGGCCGTGAGGTTATTGATACCCACGCTCCACGATTGCCT
TCTAAAGCAGAGGCACAACAAGGGCTGACCGAGGCTCAACGCATCGTGAC
GAGGAGGCACCGTTGTTTGCTGATGTGTTTGTGCGCGTGTGTGTCTGTAG
ACAGAAGGGAGATCGAAAAAGAAGGCATCACACGAGCGATGATGGCGATG
TCGTTTCCGCGTTACAAAGTAAGCACAAAAGCACATTTGCAAGCAATGCA
AAATGCAAAATGTTACAACGTCGGATCCCTCTCACTAGCTTTCTTTCTCC
TCTTCCGCCTCCTCCTAATGCTGTTGATCGAATTATTGCAACTGCTGAAA
GTGCTCGTGCTGCTGCTCTTCGTGGGAAAGATGGAGGGCTTTCTCTGTCT
CCCCCTCCCCCTCCTGTTGCTGCTTCTGCCGCTCCTACTCCTCCCACTCT
TACTCTTCCTCGACCCTTTCCGGTTTTGGTCCTGTCTCCTCTTACCTCTC
CCCCTGCTGCCTGTGCTCGTGCTGCTGCTGCTGGTACCAGTGTCATCACT
CGTATTCGTGCTGCTTCAGCTGATTCGGCTGTCCTTATTCTTTTTCCTCT
TCTCCTCCCCCTCCTCAAAGGATCGTGAGTATGTGTGGAGAGCAAGATAC
CTCATTTAGCGTCAAACTATATCGTTGCTGCCGTGGAAAAATGATCACCT
AGTAGCTGATAATTGCCTGGTGTTTTTTTGGGTATTTTTGCAACAGAAGG
TACGTGCCCTTTGGCCTATAATACGTGGCCCATCGTGTCTTTGCTTCTGT
AGCCATCCTCCACATTTCCTCCTTGTCTTTGTAAGTTGACCCTTCTCGTT
TCCCTCCCTTATCTGGCATACCTCTTATCCGTGCTTTTCCTGCTCCTCCG
CCTCTGGCCTCAACAGCGGCAGCAGTTTCGCCCCCTGAGCGTGCTGAACT
TGCTGCGATGGCGCTTAGGCGTCTTGCGATACTTGATGCATCGACGAGGC
CCCGATCGAGGAGTGGAGTGCTTCGCGAACACTCGGGTACGCTTGGGCGT
ACTGCGAGAAGGGGTGCGGATCTTCTTCTTCCTGTAATAGGAAAGCATTG
CGTTGACAATGGCATTCCTGTCACCGGGGTGAGCTTTGCGCCACTGCTTG
AAATGTGTCATCAATTTGTTTGCCATTTATTTTTTAATAAAGAGAGATAA
GGTAAAGACGTAATATATTCAAAGCACTTGTTTTGGAAAATGGATGTCAT
GAGGGAAATAGCGCGACGAGTAAGCTCACAGGATTCCCCAGTGACACCGC
CATCTCCAAGGCGCCGTGACGAAGCCATGGGATCTATTATACATGAAGAC
TTGTACAGCGTACAGACGATCCCTGGAAATGGCGATTGTGCATGATTCAC
AGCAACTATAGATGACTAGAAAAGGAGAATAGAGGATATGTGTATTCACT
TATTGATGATTAGGATGCATAGCCGTTGTACAACACGCTCACAATCCGTA
GATTGGATGATGCATATACAATGTATAATGACTAGAAATGACTATAACAA
GGAGAATAGATGGATTGTATATGGCTACGATGTATGACCAGGAAAAAGAA
ATGCAGGAAAACACAA back to topCoding sequence (CDS) from alignment at scaffold_16:21718..23483- >mRNA_7004 ID=mRNA_7004|Name=jgi.p|Nanoce1779_2|595247|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_16:21718..23483- (Nannochloropsis oceanica)
ATGTGTTTGTGCGCGTGTGTGTCTGTAGACAGAAGGGAGATCGAAAAAGA
AGGCATCACACGAGCGATGATGGCGATGTCGTTTCCGCGTTACAAAGTAA
GCACAAAAGCACATTTGCAAGCAATGCAAAATGCAAAATGTTACAACGTC
GGATCCCTCTCACTAGCTTTCTTTCTCCTCTTCCGCCTCCTCCTAATGCT
GTTGATCGAATTATTGCAACTGCTGAAAGTGCTCGTGCTGCTGCTCTTCG
TGGGAAAGATGGAGGGCTTTCTCTGTCTCCCCCTCCCCCTCCTGTTGCTG
CTTCTGCCGCTCCTACTCCTCCCACTCTTACTCTTCCTCGACCCTTTCCG
GTTTTGGTCCTGTCTCCTCTTACCTCTCCCCCTGCTGCCTGTGCTCGTGC
TGCTGCTGCTGGTACCAGTGTCATCACTCGTATTCGTGCTGCTTCAGCTG
ATTCGGCTGTCCTTATTCTTTTTCCTCTTCTCCTCCCCCTCCTCAAAGGA
TCGTGAGTATGTGTGGAGAGCAAGATACCTCATTTAG back to top
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