jgi.p|Nanoce1779_2|672040, mRNA_7003 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672040
Unique NamemRNA_7003
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1149
Alignment locationscaffold_16:18707..19994 -

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Properties
Property NameValue
TranscriptId672126
TrackFilteredModels2
ProteinId672040
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:18707..19994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672040gene_7003Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672040mRNA_7003-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7003CDS_7003Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7003 ID=mRNA_7003|Name=jgi.p|Nanoce1779_2|672040|organism=Nannochloropsis oceanica|type=mRNA|length=1149bp
ATGCTAGACCCGACCGGTCATGATCAAGTGCGGAATGAGATCCGCGATTT
AGAAATACGCGCGTGGAATACACGTGACATACAGGACTCTCCAGTAGAAG
AGGGACCTGAAGTATCGGAGGGGTTGAGTGTGACAGAGCGTGCCATGTTC
AAAAAGGAGCTAGAAGAGCGCGAGGAGCTTCAAAGCTTACTTCGGATCAT
CAACTATGCTTTGGATGAAAGTCTTCACGAGAATCTGGACATCTGTAGCG
AGGTCGGACGGATGCTAGACCCAATCGGTCATGATAAGAAAACCATGGAG
ATGGAGATGGCCTTGAGATGGCGCCACCACCACGAACTTACCCGCTTAGT
GGAACACCTGGGGATGGTCGATGTCAATATGGGTCAACTTAGGGCGGGGG
CCTGGTATGTGGCGTTCACGGAGCGATCGAGGCCCAGCACGATAGTTTCC
CCGGGCATGTTGGTGGATGACGTGTTGAAGGAAAGTGTCCCGCCCAGCCT
CCCTCTCCATTGGCCGAAGAGTCAAACCCGCGGTAAGAAGGTGGGCGAGT
GTTATTGCATGGCACTCGCTCCTGGCTTGAGCCCTTCTTCGTACACCATC
AAGTTTCAGCGCCCTGTGGACGTGAGCGTGTTGAGCACTTTGAGTTTGAC
GCATTTCTACCGGCCCTGGTATGTCTTGCGGTGGTTAGATTACGCCTGGC
AGCCGAAGCGAGACGAGTACCACTATGACACGGTTGGTAGTGTAGCGCCG
CGGGAGGTGGTTTTACGGGTCATAATAAGGGGGAGAAAGTGGAGGAAGCT
GGATTAGTGTGGTAGGGAACTTCACGTTCCTACTTACAGAGCCTTTTTAC
CGGACGCAGTTCTGGCCGTTGGCCAAGCAGGAGAGAGGAAGGGAGGGAGA
GAAGATTGAAGGCGTCCGTCTTGAGATCATCTCAAACCATGAGAATGGGG
AATATACATGCTTGTATCGCGTGGGCGTGTATGGTGAGTGGGTGGAGGAG
TTTGAAAATGATGAGCCGGGATGGGGCGACTACATGCCATCCAGGTGGAG
CTCGGGGAGTAAAATGCCGCCAGCGCGACACGCTGGAATTTTTCATGACT
ATGACATGACCAAGGAGGGAAAAGTACAGGGACAGGGACAGGGACAGGG
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protein sequence of jgi.p|Nanoce1779_2|672040

>mRNA_7003-protein ID=mRNA_7003-protein|Name=jgi.p|Nanoce1779_2|672040|organism=Nannochloropsis oceanica|type=polypeptide|length=269bp
MLDPTGHDQVRNEIRDLEIRAWNTRDIQDSPVEEGPEVSEGLSVTERAMF
KKELEEREELQSLLRIINYALDESLHENLDICSEVGRMLDPIGHDKKTME
MEMALRWRHHHELTRLVEHLGMVDVNMGQLRAGAWYVAFTERSRPSTIVS
PGMLVDDVLKESVPPSLPLHWPKSQTRGKKVGECYCMALAPGLSPSSYTI
KFQRPVDVSVLSTLSLTHFYRPWYVLRWLDYAWQPKRDEYHYDTVGSVAP
REVVLRVIIRGRKWRKLD*
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mRNA from alignment at scaffold_16:18707..19994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7003 ID=mRNA_7003|Name=jgi.p|Nanoce1779_2|672040|organism=Nannochloropsis oceanica|type=mRNA|length=1288bp|location=Sequence derived from alignment at scaffold_16:18707..19994- (Nannochloropsis oceanica)
ATGCTAGACCCGACCGGTCATGATCAAGTGCGGAATGAGATCCGCGATTT
AGAAATACGCGCGTGGAATACACGTGACATACAGGACTCTCCAGTAGAAG
AGGGACCTGAAGTATCGGAGGGGTTGAGTGTGACAGAGCGTGCCATGTTC
AAAAAGGAGCTAGAAGAGCGCGAGGAGCTTCAAAGCTTACTTCGGATCAT
CAACTATGCTTTGGATGAAAGTCTTCACGAGAATCTGGACATCTGGTCCA
ATCTCACTCTATCTTGCAGGAGATCGACATCGATGTCTGCTCCCGTCGTC
ACAAGAGTAGCGAGGTCGGACGGATGCTAGACCCAATCGGTCATGATAAG
AAAACCATGGAGATGGAGATGGCCTTGAGATGGCGCCACCACCACGAACT
TACCCGCTTAGTGGAACACCTGGGGATGGTCGATGTCAATATGGGTCAAC
TTAGGGCGGGGGCCTGGTATGTGGCGTTCACGGAGCGATCGAGGCCCAGC
ACGGTTTTGACTACGCGCGGTGGCTCCACGACGCTGACGTCGTCCTTGAC
CCACTGCACACTGCCCCTCCTTACAAACAGATAGTTTCCCCGGGCATGTT
GGTGGATGACGTGTTGAAGGAAAGTGTCCCGCCCAGCCTCCCTCTCCATT
GGCCGAAGAGTCAAACCCGCGGTAAGAAGGTGGGCGAGTGTTATTGCATG
GCACTCGCTCCTGGCTTGAGCCCTTCTTCGTACACCATCAAGTTTCAGCG
CCCTGTGGACGTGAGCGTGTTGAGCACTTTGAGTTTGACGCATTTCTACC
GGCCCTGGTATGTCTTGCGGTGGTTAGATTACGCCTGGCAGCCGAAGCGA
GACGAGTACCACTATGACACGGTTGGTAGTGTAGCGCCGCGGGAGGTGGT
TTTACGGGTCATAATAAGGGGGAGAAAGTGGAGGAAGCTGGATTAGTGTG
GTAGGGAACTTCACGTTCCTACTTACAGAGCCTTTTTACCGGACGCAGTT
CTGGCCGTTGGCCAAGCAGGAGAGAGGAAGGGAGGGAGAGAAGATTGAAG
GCGTCCGTCTTGAGATCATCTCAAACCATGAGAATGGGGAATATACATGC
TTGTATCGCGTGGGCGTGTATGGTGAGTGGGTGGAGGAGTTTGAAAATGA
TGAGCCGGGATGGGGCGACTACATGCCATCCAGGTGGAGCTCGGGGAGTA
AAATGCCGCCAGCGCGACACGCTGGAATTTTTCATGACTATGACATGACC
AAGGAGGGAAAAGTACAGGGACAGGGACAGGGACAGGG
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Coding sequence (CDS) from alignment at scaffold_16:18707..19994-

>mRNA_7003 ID=mRNA_7003|Name=jgi.p|Nanoce1779_2|672040|organism=Nannochloropsis oceanica|type=CDS|length=2421bp|location=Sequence derived from alignment at scaffold_16:18707..19994- (Nannochloropsis oceanica)
ATAGTTTCCCCGGGCATGTTGGTGGATGACGTGTTGAAGGAAAGTGTCCC
GCCCAGCCTCCCTCTCCATTGGCCGAAGAGTCAAACCCGCGGTAAGAAGG
TGGGCGAGTGTTATTGCATGGCACTCGCTCCTGGCTTGAGCCCTTCTTCG
TACACCATCAAGTTTCAGCGCCCTGTGGACGTGAGCGTGTTGAGCACTTT
GAGTTTGACGCATTTCTACCGGCCCTGGTATGTCTTGCGGTGGTTAGATT
ACGCCTGGCAGCCGAAGCGAGACGAGTACCACTATGACACGGTTGGTAGT
GTAGCGCCGCGGGAGGTGGTTTTACGGGTCATAATAAGGGGGAGAAAGTG
GAGGAAGCTGGATTAGTAGCGAGGTCGGACGGATGCTAGACCCAATCGGT
CATGATAAGAAAACCATGGAGATGGAGATGGCCTTGAGATGGCGCCACCA
CCACGAACTTACCCGCTTAGTGGAACACCTGGGGATGGTCGATGTCAATA
TGGGTCAACTTAGGGCGGGGGCCTGGTATGTGGCGTTCACGGAGCGATCG
AGGCCCAGCACGATGCTAGACCCGACCGGTCATGATCAAGTGCGGAATGA
GATCCGCGATTTAGAAATACGCGCGTGGAATACACGTGACATACAGGACT
CTCCAGTAGAAGAGGGACCTGAAGTATCGGAGGGGTTGAGTGTGACAGAG
CGTGCCATGTTCAAAAAGGAGCTAGAAGAGCGCGAGGAGCTTCAAAGCTT
ACTTCGGATCATCAACTATGCTTTGGATGAAAGTCTTCACGAGAATCTGG
ACATCTGATAGTTTCCCCGGGCATGTTGGTGGATGACGTGTTGAAGGAAA
GTGTCCCGCCCAGCCTCCCTCTCCATTGGCCGAAGAGTCAAACCCGCGGT
AAGAAGGTGGGCGAGTGTTATTGCATGGCACTCGCTCCTGGCTTGAGCCC
TTCTTCGTACACCATCAAGTTTCAGCGCCCTGTGGACGTGAGCGTGTTGA
GCACTTTGAGTTTGACGCATTTCTACCGGCCCTGGTATGTCTTGCGGTGG
TTAGATTACGCCTGGCAGCCGAAGCGAGACGAGTACCACTATGACACGGT
TGGTAGTGTAGCGCCGCGGGAGGTGGTTTTACGGGTCATAATAAGGGGGA
GAAAGTGGAGGAAGCTGGATTAGTAGCGAGGTCGGACGGATGCTAGACCC
AATCGGTCATGATAAGAAAACCATGGAGATGGAGATGGCCTTGAGATGGC
GCCACCACCACGAACTTACCCGCTTAGTGGAACACCTGGGGATGGTCGAT
GTCAATATGGGTCAACTTAGGGCGGGGGCCTGGTATGTGGCGTTCACGGA
GCGATCGAGGCCCAGCACGATGCTAGACCCGACCGGTCATGATCAAGTGC
GGAATGAGATCCGCGATTTAGAAATACGCGCGTGGAATACACGTGACATA
CAGGACTCTCCAGTAGAAGAGGGACCTGAAGTATCGGAGGGGTTGAGTGT
GACAGAGCGTGCCATGTTCAAAAAGGAGCTAGAAGAGCGCGAGGAGCTTC
AAAGCTTACTTCGGATCATCAACTATGCTTTGGATGAAAGTCTTCACGAG
AATCTGGACATCTGATAGTTTCCCCGGGCATGTTGGTGGATGACGTGTTG
AAGGAAAGTGTCCCGCCCAGCCTCCCTCTCCATTGGCCGAAGAGTCAAAC
CCGCGGTAAGAAGGTGGGCGAGTGTTATTGCATGGCACTCGCTCCTGGCT
TGAGCCCTTCTTCGTACACCATCAAGTTTCAGCGCCCTGTGGACGTGAGC
GTGTTGAGCACTTTGAGTTTGACGCATTTCTACCGGCCCTGGTATGTCTT
GCGGTGGTTAGATTACGCCTGGCAGCCGAAGCGAGACGAGTACCACTATG
ACACGGTTGGTAGTGTAGCGCCGCGGGAGGTGGTTTTACGGGTCATAATA
AGGGGGAGAAAGTGGAGGAAGCTGGATTAGTAGCGAGGTCGGACGGATGC
TAGACCCAATCGGTCATGATAAGAAAACCATGGAGATGGAGATGGCCTTG
AGATGGCGCCACCACCACGAACTTACCCGCTTAGTGGAACACCTGGGGAT
GGTCGATGTCAATATGGGTCAACTTAGGGCGGGGGCCTGGTATGTGGCGT
TCACGGAGCGATCGAGGCCCAGCACGATGCTAGACCCGACCGGTCATGAT
CAAGTGCGGAATGAGATCCGCGATTTAGAAATACGCGCGTGGAATACACG
TGACATACAGGACTCTCCAGTAGAAGAGGGACCTGAAGTATCGGAGGGGT
TGAGTGTGACAGAGCGTGCCATGTTCAAAAAGGAGCTAGAAGAGCGCGAG
GAGCTTCAAAGCTTACTTCGGATCATCAACTATGCTTTGGATGAAAGTCT
TCACGAGAATCTGGACATCTG
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Synonyms
Publications