jgi.p|Nanoce1779_2|573834, mRNA_700 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573834
Unique Name	mRNA_700
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1750
Alignment location	scaffold_2:222085..223834 -

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Properties


Property Name	Value
TranscriptId	573920
Track	FilteredModels2
ProteinId	573834

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:222085..223834 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573834	gene_700	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573834	mRNA_700-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_700	CDS_700	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:222085..223834-
coding sequence from alignment at scaffold_2:222085..223834-

mRNA sequence

>mRNA_700 ID=mRNA_700|Name=jgi.p|Nanoce1779_2|573834|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp
ACAGGTGCACGGTGCACAAATAGAGCAAGTAAGTGCAGGAAAGCGTGCCT
GATTGCAGGAGAAAGTTTTTTTTTCGTGTGACACACACAGACAACATGAG
TCGTGGCCGCGTCTTTTTTGCTTTGGGCCTTGCAGTCCTACCCACCCTGG
CGCAAGCCATCCATTACTTCACGGGCTTAGATTCCCTGGCCGGCCTCGAG
ATTGTAGGGATAACGGATTCAAATGGCATGGTGGTGAAAAACACATTGGT
TTCGTTTTCGAACAAGCAGTGCATCCAAGACCTGTACGACTTGGATTTTC
CCTTCAACTTTATTAACTTGCCAAGCACAACGCACGAGCTCGCTAACGTC
CTTGTGGAGACTCCCAGCAATGAATTGATGGACTTTTTCGACATTCATGA
TTGCAAGTCTTTCATTTACTTCACCGCGGGTGATTCCTTGCAAGCAAAAG
GCACGAAGCTTACACCCACAAGTGGACATGAATTGGACGATTTCTTTTGG
GAGAAGCAGCGTTTACCCAATGTCAAAATTCGAAACGACTTGGAGAAACC
TGTCAATGTTTATTGGGAGTCGTGGGATGGACAGCCAAGGGAGGTAAGCA
TCATGGAGCTCGTCCCCGGGCAAGAACAGAGCTTTGGCTCCTTCTTAAGC
CATACACTGATTTTTCGGGATGTGGAGAACAATATGCGTTTGATGGCCCG
TGCGGTGATTACGGACGGTAGCAAGCCAATCGTCATCTCCGATCTCTTGG
CGGGGCCAGCAGACACAGAGGTGTTGCAGCTGACAGACCATCAAGTGAAG
GTGTGGAGAGGCCGTCTCAGGACCAATATATCTCGCCTCAAGCAAAATGA
AGCACAGCCCCCTAATGTGCGGACGTTTACAGACGTGGGTTTTAGAAAGC
TGCGTATTCCCGCCAACTTGCTCCGGCACCTTCAAGAGTTCCTTGAGCAG
AACGAAGGCAAGCGCGTGGACGAAGGCTGGAATGAGGATGATCTGCACGT
AAACTTCTACGAGAGCATGACAACGGTTGTCGCACTTGATCACGAAATGC
GCGAGCTCGTGTTTGGCACCATTAAACCTATTTTGGAGTCGTGGATAGGC
GGAGAGAAGCTGGATCCCACCAGCACGTACGGCATCCGCCGCTACTACAA
CGGGAGCGTCTTGCGCGATCACGTCGACATTGGCGCCACACACATCGTCT
CGGCTATCCTGAATCTCGGGCAGGACGTGGATAAAGTCTGGCCCTTGCAA
ATTCTCGATCACGAGGGGAGACGGCACTTTATTGAGATGGTGGCCGGAGA
CATGTGCTTGTATGAATCTGCGACCTCTATCCACGGCAGGACTCAAGCGA
TGGTGGGGAGGACGTTTGACAATGTATTCACTCACTTTCAGCCAGTAAAG
CCCTTTGATGTTGTGGCTGCTGAGGGGGTGCATGCGGTCGTGCACCCAAT
GCTGACGGAGGAACAGGAGTGGTTGGAGGCGGAGGGAGAGCTGGAAGAAG
AGGGTGAGGAAGAGGGGGGAATCGAGAACGTGGAGGGGAAAGGGTTGGAG
TTCGAGGAGGGTGAAATCGGAGATAGGCTGGTCGATGACAAGATGGGGAG
GGGTCAGCAGCATAAGCCGGTTGATAACTTTGAGGAAGGAACGGGGCTGA
TGGAGGAAATGTGAGGGAAAAGGAGGGGGCAAAAGGGACGCTAGTAGAGA
GGATGGAGAAGGCTGTGCTGCGCTGAAATGGTGAATATGGATAAATTGGA

protein sequence of jgi.p|Nanoce1779_2|573834

>mRNA_700-protein ID=mRNA_700-protein|Name=jgi.p|Nanoce1779_2|573834|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MVVKNTLVSFSNKQCIQDLYDLDFPFNFINLPSTTHELANVLVETPSNEL
MDFFDIHDCKSFIYFTAGDSLQAKGTKLTPTSGHELDDFFWEKQRLPNVK
IRNDLEKPVNVYWESWDGQPREVSIMELVPGQEQSFGSFLSHTLIFRDVE
NNMRLMARAVITDGSKPIVISDLLAGPADTEVLQLTDHQVKVWRGRLRTN
ISRLKQNEAQPPNVRTFTDVGFRKLRIPANLLRHLQEFLEQNEGKRVDEG
WNEDDLHVNFYESMTTVVALDHEMRELVFGTIKPILESWIGGEKLDPTST
YGIRRYYNGSVLRDHVDIGATHIVSAILNLGQDVDKVWPLQILDHEGRRH
FIEMVAGDMCLYESATSIHGRTQAMVGRTFDNVFTHFQPVKPFDVVAAEG
VHAVVHPMLTEEQEWLEAEGELEEEGEEEGGIENVEGKGLEFEEGEIGDR
LVDDKMGRGQQHKPVDNFEEGTGLMEEM*

mRNA from alignment at scaffold_2:222085..223834-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_700 ID=mRNA_700|Name=jgi.p|Nanoce1779_2|573834|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp|location=Sequence derived from alignment at scaffold_2:222085..223834- (Nannochloropsis oceanica)
ACAGGTGCACGGTGCACAAATAGAGCAAGTAAGTGCAGGAAAGCGTGCCT
GATTGCAGGAGAAAGTTTTTTTTTCGTGTGACACACACAGACAACATGAG
TCGTGGCCGCGTCTTTTTTGCTTTGGGCCTTGCAGTCCTACCCACCCTGG
CGCAAGCCATCCATTACTTCACGGGCTTAGATTCCCTGGCCGGCCTCGAG
ATTGTAGGGATAACGGATTCAAATGGCATGGTGGTGAAAAACACATTGGT
TTCGTTTTCGAACAAGCAGTGCATCCAAGACCTGTACGACTTGGATTTTC
CCTTCAACTTTATTAACTTGCCAAGCACAACGCACGAGCTCGCTAACGTC
CTTGTGGAGACTCCCAGCAATGAATTGATGGACTTTTTCGACATTCATGA
TTGCAAGTCTTTCATTTACTTCACCGCGGGTGATTCCTTGCAAGCAAAAG
GCACGAAGCTTACACCCACAAGTGGACATGAATTGGACGATTTCTTTTGG
GAGAAGCAGCGTTTACCCAATGTCAAAATTCGAAACGACTTGGAGAAACC
TGTCAATGTTTATTGGGAGTCGTGGGATGGACAGCCAAGGGAGGTAAGCA
TCATGGAGCTCGTCCCCGGGCAAGAACAGAGCTTTGGCTCCTTCTTAAGC
CATACACTGATTTTTCGGGATGTGGAGAACAATATGCGTTTGATGGCCCG
TGCGGTGATTACGGACGGTAGCAAGCCAATCGTCATCTCCGATCTCTTGG
CGGGGCCAGCAGACACAGAGGTGTTGCAGCTGACAGACCATCAAGTGAAG
GTGTGGAGAGGCCGTCTCAGGACCAATATATCTCGCCTCAAGCAAAATGA
AGCACAGCCCCCTAATGTGCGGACGTTTACAGACGTGGGTTTTAGAAAGC
TGCGTATTCCCGCCAACTTGCTCCGGCACCTTCAAGAGTTCCTTGAGCAG
AACGAAGGCAAGCGCGTGGACGAAGGCTGGAATGAGGATGATCTGCACGT
AAACTTCTACGAGAGCATGACAACGGTTGTCGCACTTGATCACGAAATGC
GCGAGCTCGTGTTTGGCACCATTAAACCTATTTTGGAGTCGTGGATAGGC
GGAGAGAAGCTGGATCCCACCAGCACGTACGGCATCCGCCGCTACTACAA
CGGGAGCGTCTTGCGCGATCACGTCGACATTGGCGCCACACACATCGTCT
CGGCTATCCTGAATCTCGGGCAGGACGTGGATAAAGTCTGGCCCTTGCAA
ATTCTCGATCACGAGGGGAGACGGCACTTTATTGAGATGGTGGCCGGAGA
CATGTGCTTGTATGAATCTGCGACCTCTATCCACGGCAGGACTCAAGCGA
TGGTGGGGAGGACGTTTGACAATGTATTCACTCACTTTCAGCCAGTAAAG
CCCTTTGATGTTGTGGCTGCTGAGGGGGTGCATGCGGTCGTGCACCCAAT
GCTGACGGAGGAACAGGAGTGGTTGGAGGCGGAGGGAGAGCTGGAAGAAG
AGGGTGAGGAAGAGGGGGGAATCGAGAACGTGGAGGGGAAAGGGTTGGAG
TTCGAGGAGGGTGAAATCGGAGATAGGCTGGTCGATGACAAGATGGGGAG
GGGTCAGCAGCATAAGCCGGTTGATAACTTTGAGGAAGGAACGGGGCTGA
TGGAGGAAATGTGAGGGAAAAGGAGGGGGCAAAAGGGACGCTAGTAGAGA
GGATGGAGAAGGCTGTGCTGCGCTGAAATGGTGAATATGGATAAATTGGA

Coding sequence (CDS) from alignment at scaffold_2:222085..223834-

>mRNA_700 ID=mRNA_700|Name=jgi.p|Nanoce1779_2|573834|organism=Nannochloropsis oceanica|type=CDS|length=1437bp|location=Sequence derived from alignment at scaffold_2:222085..223834- (Nannochloropsis oceanica)
ATGGTGGTGAAAAACACATTGGTTTCGTTTTCGAACAAGCAGTGCATCCA
AGACCTGTACGACTTGGATTTTCCCTTCAACTTTATTAACTTGCCAAGCA
CAACGCACGAGCTCGCTAACGTCCTTGTGGAGACTCCCAGCAATGAATTG
ATGGACTTTTTCGACATTCATGATTGCAAGTCTTTCATTTACTTCACCGC
GGGTGATTCCTTGCAAGCAAAAGGCACGAAGCTTACACCCACAAGTGGAC
ATGAATTGGACGATTTCTTTTGGGAGAAGCAGCGTTTACCCAATGTCAAA
ATTCGAAACGACTTGGAGAAACCTGTCAATGTTTATTGGGAGTCGTGGGA
TGGACAGCCAAGGGAGGTAAGCATCATGGAGCTCGTCCCCGGGCAAGAAC
AGAGCTTTGGCTCCTTCTTAAGCCATACACTGATTTTTCGGGATGTGGAG
AACAATATGCGTTTGATGGCCCGTGCGGTGATTACGGACGGTAGCAAGCC
AATCGTCATCTCCGATCTCTTGGCGGGGCCAGCAGACACAGAGGTGTTGC
AGCTGACAGACCATCAAGTGAAGGTGTGGAGAGGCCGTCTCAGGACCAAT
ATATCTCGCCTCAAGCAAAATGAAGCACAGCCCCCTAATGTGCGGACGTT
TACAGACGTGGGTTTTAGAAAGCTGCGTATTCCCGCCAACTTGCTCCGGC
ACCTTCAAGAGTTCCTTGAGCAGAACGAAGGCAAGCGCGTGGACGAAGGC
TGGAATGAGGATGATCTGCACGTAAACTTCTACGAGAGCATGACAACGGT
TGTCGCACTTGATCACGAAATGCGCGAGCTCGTGTTTGGCACCATTAAAC
CTATTTTGGAGTCGTGGATAGGCGGAGAGAAGCTGGATCCCACCAGCACG
TACGGCATCCGCCGCTACTACAACGGGAGCGTCTTGCGCGATCACGTCGA
CATTGGCGCCACACACATCGTCTCGGCTATCCTGAATCTCGGGCAGGACG
TGGATAAAGTCTGGCCCTTGCAAATTCTCGATCACGAGGGGAGACGGCAC
TTTATTGAGATGGTGGCCGGAGACATGTGCTTGTATGAATCTGCGACCTC
TATCCACGGCAGGACTCAAGCGATGGTGGGGAGGACGTTTGACAATGTAT
TCACTCACTTTCAGCCAGTAAAGCCCTTTGATGTTGTGGCTGCTGAGGGG
GTGCATGCGGTCGTGCACCCAATGCTGACGGAGGAACAGGAGTGGTTGGA
GGCGGAGGGAGAGCTGGAAGAAGAGGGTGAGGAAGAGGGGGGAATCGAGA
ACGTGGAGGGGAAAGGGTTGGAGTTCGAGGAGGGTGAAATCGGAGATAGG
CTGGTCGATGACAAGATGGGGAGGGGTCAGCAGCATAAGCCGGTTGATAA
CTTTGAGGAAGGAACGGGGCTGATGGAGGAAATGTGA

Synonyms

Publications