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Properties
| Property Name | Value |
|---|
| TranscriptId | 627688 |
| Track | FilteredModels2 |
| ProteinId | 627602 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:187921..190842 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_70 ID=mRNA_70|Name=jgi.p|Nanoce1779_2|627602|organism=Nannochloropsis oceanica|type=mRNA|length=2223bp
TCCCCTTCGAAATTCGGAGGCCCGCGAGTCTTGCATGCCGACCCTGAACA
TCACCGACCATGCTCCGCATTACACCTATGCACAGCCAACACGCGTTGAT
CTGTCATGTTTGGTGCTTGTGGCATGCTTTCTGGCTCTGGCCACCGTGGT
TTTGGTCACACAATTCCGTATGTACGCGCCATCGTCATTTCCTTCTCAAC
GGCACATCTCAATTCCCTTGCCTTTAGACACGTGATCCCAGTACAGGAGT
ATCAGCAAAAAGCCTCATTGTGTACACACACACGACATTAACAAGGAAAA
TTTCCACTCACTCTTCTTCAGCAGGCGGGATGGCGGGGTTGGACAAGCGA
AAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTGAGCAAACTCCCTCC
CAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCCGCAGTACGTAAACC
TCACGTTCAGCACCTTCATTTGCACAGCGTGCTCGGGCATTCATCGCGAG
TTCTCTCACCGTGTTAAGAGTATCTCCCTCTCCACCTTCACCCTCGATGA
GGTCAAGGCCTTAAAAGACGGAGGAAACGAAGCTTGCGCCGCTCTCTATC
TTGCCCATTGGGACCCGAGAGATTATGCAGAGCCGGAAGCAGGGCAAGAA
CAACGAATCCGTGACTGGATCAGGCAGAAGTACATTGAGAAAAGGTGGCA
TGCTCATAGTACCTACCATCCCGGAGGAGGAAAGGGCGGGGACGGAAGGG
GGAGGACGAGCTTAGGTGGCAGCTTCGGGGTGGAGTGGGGAGGGTGGGGG
GGGGGAGGAGGAGGGAGAGAGGGAGGGAGGGAGGAGATGTATGACCCACA
CCCGACGTCGTTGAGTCGGAGGCAGCAATCTGCGTCCTCTTCCTTGTCGT
CGACAAGGGCGACGGGAGGAGAAAAAGGAACAGGAGGAGCATCGACCAGT
CACCCAGATGATCGAGAAGTAGAGGAAGGGAGGGAGGGGGGGCTGGGTCG
GAGTAGAAGGAAGCAGCAGCAGGGGATGGACTTGTTGGATTTGGTGTTTG
CGCCTGGCTCGCCAGAACGCAAGCAGCAGCCGCAGCAGAAGAAGGAGGAG
ACAACAGGGGCTTTTGCGTCTGATCCCTTTGCAAGCTCTTCAGGATGGGC
GGGGAGTACAGGGGGGGGACAATCCGCCATCAGCTTCAACAATACACCAC
CCCCGCCGCAGCAGCCTCCCCTCCCTCCCCACCTCCAACAGCACCCCTCC
TCCTCTTCATCGCAATTTGGCGCCGACTTCTTTTCTGCCCCTCAATTTCC
CTCTCCTCCCCAGCCGCAACCTTCCACCTTTTACCCTTCCCCACCTCCTC
CGCCTCCGCAGCAGCAGCAGCAGCAGTACCAGCAGCAGAGGCAGCCGCAG
CCGGTTTACGACGGGTGAAGCTGTGATTTACACGGACTCCCAAGGCAAAA
AAACCCGGACGGTAATCAAAGAAGTCCACATGGATGATTACCCTCCTTAC
TACACTATCACACTCGCCAACGGCTCAGAGCGACAGACGGATTTCCACCA
TGTTTCCAAAATTTATGCTCCTCTTCCTCCTGCCCCCGCTCCTCCTCGCG
CAACTGCCACTCCCGCCACGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCT
TGGGAGAAACAGCAAGCGGCGGTGCCGGCGTCGGGATCACACCTGCAACA
ACAATTGCAGCCGCAGCAGCACAATCCGTTTTTGGCTTCTGCCGTTCCTC
CTGGTGCTGCTCCTTTTCCTCCCCCTCCTCCACCGGCAAGTGGGAATCCG
TTCGATATGTTTTAGAGGAGGGGAGATAAAGGAAAGAGGAAAGAGAGGAA
TAGATGTTTTAGAGGAGGGGAGATAAAGGAAAGAGGAAAGAGAGGAATAG
AGGCATAGGAGAAAGAAAAAAAGAAATCAAGGCATACGATATCAGAATAA
ACTCACACTAAAGAAGTCCAGATAGTCAATAGAGGGAAAAGAGAAAGGCA
AAGAAAAGTTTTATTTTTTTATTTTGTGAATGTTAAGATATTTTCGGGTT
AGCTCTTTTTATCTCTCAGTAAGACTCTGTAAGACATATCTCGAGTTGGA
CTGAAGGATCTCGAGTTGGACTGAAGGATGCATGAGGATCTCGAGTTGGA
CTGAAGGATGCATGAGGTTCTTGCTTTGCTTTCGCGTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCT back to topprotein sequence of jgi.p|Nanoce1779_2|627602 >mRNA_70-protein ID=mRNA_70-protein|Name=jgi.p|Nanoce1779_2|627602|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MAGLDKRKEERLIKAVKDLSKLPPNKRCADCTEKLPQYVNLTFSTFICTA
CSGIHREFSHRVKSISLSTFTLDEVKALKDGGNEACAALYLAHWDPRDYA
EPEAGQEQRIRDWIRQKYIEKRWHAHSTYHPGGGKGGDGRGRTSLGGSFG
VEWGGWGGGGGGREGGREEMYDPHPTSLSRRQQSASSSLSSTRATGGEKG
TGGASTSHPDDREVEEGREGGLGRSRRKQQQGMDLLDLVFAPGSPERKQQ
PQQKKEETTGAFASDPFASSSGWAGSTGGGQSAISFNNTPPPPQQPPLPP
HLQQHPSSSSSQFGADFFSAPQFPSPPQPQPSTFYPSPPPPPPQQQQQQY
QQQRQPQPVYDG* back to topmRNA from alignment at scaffold_3:187921..190842- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_70 ID=mRNA_70|Name=jgi.p|Nanoce1779_2|627602|organism=Nannochloropsis oceanica|type=mRNA|length=2922bp|location=Sequence derived from alignment at scaffold_3:187921..190842- (Nannochloropsis oceanica)
TCCCCTTCGAAATTCGGAGGCCCGCGAGTCTTGCATGCCGACCCTGAACA
TCACCGACCATGCTCCGCATTACACCTATGCACAGCCAACACGCGTTGAT
CTGTCATGTTTGGTGCTTGTGGCATGCTTTCTGGCTCTGGCCACCGTGGT
TTTGGTCACACAATTCCGTATGTACGCGCCATCGTCATTTCCTTCTCAAC
GGCACATCTCAATTCCCTTGCCTTTAGACACGTGATCCCAGTACAGGAGT
ATCAGCAAAAAGCCTCATTGTGTACACACACACGACATTAACAAGGAAAA
TTTCCACTCACTCTTCTTCAGCAGGCGGGATGGCGGGGTTGGACAAGCGA
AAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTGAGCAAACTCCCTCC
CAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCCGCAGTACGTAAACC
TCACGTTCAGCACCTTCATTTGCACAGGTACAGGATTTCGGGGATGGGCG
GTAGTTTGGGATGTGGGTGGGCGCGATGGCTGCGTATTCACTTGCGCTCC
GCTGGTGCCTTCGTCATGTACGCTTGCTTACTTGGGATAAGGCGTGCCTT
CTTATTATTTTGTTTGCGTGCGCGCGCGCAGAAATGGCCTCTAAGGCAGT
TGCATCCGCCCTTGCGGTTCATCTCCCCATTCACCCCTCCCTATCTTCAC
CTACAGCGTGCTCGGGCATTCATCGCGAGTTCTCTCACCGTGTTAAGAGT
ATCTCCCTCTCCACCTTCACCCTCGATGAGGTCAAGGCCTTAAAAGACGG
AGGAAACGAAGCTTGCGCCGCTCTCTATCTTGCCCATTGGGACCCGAGAG
ATTATGCAGAGCCGGAAGCAGGGCAAGAACAACGAATCCGTGACTGGATC
AGGCAGAAGTACATTGAGAAAAGGTGGCATGCTCATAGTACCTACCATCC
CGGAGGAGGAAAGGGCGGGGACGGAAGGGGGAGGACGAGCTTAGGTGGCA
GCTTCGGGGTGGAGTGGGGAGGGTGGGGGGGGGGAGGAGGAGGGAGAGAG
GGAGGGAGGGAGGAGATGTATGACCCACACCCGACGTCGTTGAGTCGGAG
GCAGCAATCTGCGTCCTCTTCCTTGTCGTCGACAAGGGCGACGGGAGGAG
AAAAAGGAACAGGAGGAGCATCGACCAGTCACCCAGATGATCGAGAAGTA
GAGGAAGGGAGGGAGGGGGGGCTGGGTCGGAGTAGAAGGAAGCAGCAGCA
GGGGATGGACTTGTTGGATTTGGTGTTTGCGCCTGGCTCGCCAGAACGCA
AGCAGCAGCCGCAGCAGAAGAAGGAGGAGACAACAGGGGCTTTTGCGTCT
GATCCCTTTGCAAGCTCTTCAGGATGGGCGGGGAGTACAGGGGGGGGACA
ATCCGCCATCAGCTTCAACAATACACCACCCCCGCCGCAGCAGCCTCCCC
TCCCTCCCCACCTCCAACAGCACCCCTCCTCCTCTTCATCGCAATTTGGC
GCCGACTTCTTTTCTGCCCCTCAATTTCCCTCTCCTCCCCAGCCGCAACC
TTCCACCTTTTACCCTTCCCCACCTCCTCCGCCTCCGCAGCAGCAGCAGC
AGCAGTACCAGCAGCAGAGGCAGCCGCAGCCGGTTTACGGTGACATCCCT
ACTCCTCCCCCGGCACCTTTAACCCTCCCTCAGCAAGGAGGGGAAGGATT
TCAAGGCTACCCCTCCGTCACTGCCCCCCCGCCGGCCCCGCCTCCTCCTC
CCCAACAGCAGCAGCAACAACAACAACCAGCCTATGCTGGCGGCTGGCCC
CGGCAACAGCAGCACCAGCAGCAACAACAAGGACAGCAGCAGCCTCCGTT
CCCACAGCAGCAGCAACAACAGCCTACCCCCCCGCGATCCTTCCCCTCCT
CTTACCCCCCTAAACTCCCTCCCGGCATGGTCCGCTTCACCCCTCCCTCC
CCCCCTCCCTCCCGTTCCCCCATCCAAACCCTCTCCATCGAAGATGCCTT
TGGGAACCTGGACATATCCACCAGCGGCACTACCACCCTACCTTTCCCCC
CCACACACACCTCCGCCCATCCCCAGCCCCCCATCGCCCCCTCCCTTCCT
ACCTTCCAGACGGGTGAAGCTGTGATTTACACGGACTCCCAAGGCAAAAA
AACCCGGACGGTAATCAAAGAAGTCCACATGGATGATTACCCTCCTTACT
ACACTATCACACTCGCCAACGGCTCAGAGCGACAGACGGATTTCCACCAT
GTTTCCAAAATTTATGCTCCTCTTCCTCCTGCCCCCGCTCCTCCTCGCGC
AACTGCCACTCCCGCCACGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCTT
GGGAGAAACAGCAAGCGGCGGTGCCGGCGTCGGGATCACACCTGCAACAA
CAATTGCAGCCGCAGCAGCACAATCCGTTTTTGGCTTCTGCCGTTCCTCC
TGGTGCTGCTCCTTTTCCTCCCCCTCCTCCACCGGCAAGTGGGAATCCGT
TCGATATGTTTTAGAGGAGGGGAGATAAAGGAAAGAGGAAAGAGAGGAAT
AGATGTTTTAGAGGAGGGGAGATAAAGGAAAGAGGAAAGAGAGGAATAGA
GGCATAGGAGAAAGAAAAAAAGAAATCAAGGCATACGATATCAGAATAAA
CTCACACTAAAGAAGTCCAGATAGTCAATAGAGGGAAAAGAGAAAGGCAA
AGAAAAGTTTTATTTTTTTATTTTGTGAATGTTAAGATATTTTCGGGTTA
GCTCTTTTTATCTCTCAGTAAGACTCTGTAAGACATATCTCGAGTTGGAC
TGAAGGATCTCGAGTTGGACTGAAGGATGCATGAGGATCTCGAGTTGGAC
TGAAGGATGCATGAGGTTCTTGCTTTGCTTTCGCGTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCT back to topCoding sequence (CDS) from alignment at scaffold_3:187921..190842- >mRNA_70 ID=mRNA_70|Name=jgi.p|Nanoce1779_2|627602|organism=Nannochloropsis oceanica|type=CDS|length=3267bp|location=Sequence derived from alignment at scaffold_3:187921..190842- (Nannochloropsis oceanica)
ACGGGTGACGTGCTCGGGCATTCATCGCGAGTTCTCTCACCGTGTTAAGA
GTATCTCCCTCTCCACCTTCACCCTCGATGAGGTCAAGGCCTTAAAAGAC
GGAGGAAACGAAGCTTGCGCCGCTCTCTATCTTGCCCATTGGGACCCGAG
AGATTATGCAGAGCCGGAAGCAGGGCAAGAACAACGAATCCGTGACTGGA
TCAGGCAGAAGTACATTGAGAAAAGGTGGCATGCTCATAGTACCTACCAT
CCCGGAGGAGGAAAGGGCGGGGACGGAAGGGGGAGGACGAGCTTAGGTGG
CAGCTTCGGGGTGGAGTGGGGAGGGTGGGGGGGGGGAGGAGGAGGGAGAG
AGGGAGGGAGGGAGGAGATGTATGACCCACACCCGACGTCGTTGAGTCGG
AGGCAGCAATCTGCGTCCTCTTCCTTGTCGTCGACAAGGGCGACGGGAGG
AGAAAAAGGAACAGGAGGAGCATCGACCAGTCACCCAGATGATCGAGAAG
TAGAGGAAGGGAGGGAGGGGGGGCTGGGTCGGAGTAGAAGGAAGCAGCAG
CAGGGGATGGACTTGTTGGATTTGGTGTTTGCGCCTGGCTCGCCAGAACG
CAAGCAGCAGCCGCAGCAGAAGAAGGAGGAGACAACAGGGGCTTTTGCGT
CTGATCCCTTTGCAAGCTCTTCAGGATGGGCGGGGAGTACAGGGGGGGGA
CAATCCGCCATCAGCTTCAACAATACACCACCCCCGCCGCAGCAGCCTCC
CCTCCCTCCCCACCTCCAACAGCACCCCTCCTCCTCTTCATCGCAATTTG
GCGCCGACTTCTTTTCTGCCCCTCAATTTCCCTCTCCTCCCCAGCCGCAA
CCTTCCACCTTTTACCCTTCCCCACCTCCTCCGCCTCCGCAGCAGCAGCA
GCAGCAGTACCAGCAGCAGAGGCAGCCGCAGCCGGTTTACGATGGCGGGG
TTGGACAAGCGAAAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTGAG
CAAACTCCCTCCCAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCCGC
AGTACGTAAACCTCACGTTCAGCACCTTCATTTGCACAGACGGGTGACGT
GCTCGGGCATTCATCGCGAGTTCTCTCACCGTGTTAAGAGTATCTCCCTC
TCCACCTTCACCCTCGATGAGGTCAAGGCCTTAAAAGACGGAGGAAACGA
AGCTTGCGCCGCTCTCTATCTTGCCCATTGGGACCCGAGAGATTATGCAG
AGCCGGAAGCAGGGCAAGAACAACGAATCCGTGACTGGATCAGGCAGAAG
TACATTGAGAAAAGGTGGCATGCTCATAGTACCTACCATCCCGGAGGAGG
AAAGGGCGGGGACGGAAGGGGGAGGACGAGCTTAGGTGGCAGCTTCGGGG
TGGAGTGGGGAGGGTGGGGGGGGGGAGGAGGAGGGAGAGAGGGAGGGAGG
GAGGAGATGTATGACCCACACCCGACGTCGTTGAGTCGGAGGCAGCAATC
TGCGTCCTCTTCCTTGTCGTCGACAAGGGCGACGGGAGGAGAAAAAGGAA
CAGGAGGAGCATCGACCAGTCACCCAGATGATCGAGAAGTAGAGGAAGGG
AGGGAGGGGGGGCTGGGTCGGAGTAGAAGGAAGCAGCAGCAGGGGATGGA
CTTGTTGGATTTGGTGTTTGCGCCTGGCTCGCCAGAACGCAAGCAGCAGC
CGCAGCAGAAGAAGGAGGAGACAACAGGGGCTTTTGCGTCTGATCCCTTT
GCAAGCTCTTCAGGATGGGCGGGGAGTACAGGGGGGGGACAATCCGCCAT
CAGCTTCAACAATACACCACCCCCGCCGCAGCAGCCTCCCCTCCCTCCCC
ACCTCCAACAGCACCCCTCCTCCTCTTCATCGCAATTTGGCGCCGACTTC
TTTTCTGCCCCTCAATTTCCCTCTCCTCCCCAGCCGCAACCTTCCACCTT
TTACCCTTCCCCACCTCCTCCGCCTCCGCAGCAGCAGCAGCAGCAGTACC
AGCAGCAGAGGCAGCCGCAGCCGGTTTACGATGGCGGGGTTGGACAAGCG
AAAGGAGGAGCGCCTCATCAAGGCTGTTAAGGACTTGAGCAAACTCCCTC
CCAATAAGCGCTGCGCAGACTGCACAGAGAAGCTGCCGCAGTACGTAAAC
CTCACGTTCAGCACCTTCATTTGCACAGACGGGTGACGTGCTCGGGCATT
CATCGCGAGTTCTCTCACCGTGTTAAGAGTATCTCCCTCTCCACCTTCAC
CCTCGATGAGGTCAAGGCCTTAAAAGACGGAGGAAACGAAGCTTGCGCCG
CTCTCTATCTTGCCCATTGGGACCCGAGAGATTATGCAGAGCCGGAAGCA
GGGCAAGAACAACGAATCCGTGACTGGATCAGGCAGAAGTACATTGAGAA
AAGGTGGCATGCTCATAGTACCTACCATCCCGGAGGAGGAAAGGGCGGGG
ACGGAAGGGGGAGGACGAGCTTAGGTGGCAGCTTCGGGGTGGAGTGGGGA
GGGTGGGGGGGGGGAGGAGGAGGGAGAGAGGGAGGGAGGGAGGAGATGTA
TGACCCACACCCGACGTCGTTGAGTCGGAGGCAGCAATCTGCGTCCTCTT
CCTTGTCGTCGACAAGGGCGACGGGAGGAGAAAAAGGAACAGGAGGAGCA
TCGACCAGTCACCCAGATGATCGAGAAGTAGAGGAAGGGAGGGAGGGGGG
GCTGGGTCGGAGTAGAAGGAAGCAGCAGCAGGGGATGGACTTGTTGGATT
TGGTGTTTGCGCCTGGCTCGCCAGAACGCAAGCAGCAGCCGCAGCAGAAG
AAGGAGGAGACAACAGGGGCTTTTGCGTCTGATCCCTTTGCAAGCTCTTC
AGGATGGGCGGGGAGTACAGGGGGGGGACAATCCGCCATCAGCTTCAACA
ATACACCACCCCCGCCGCAGCAGCCTCCCCTCCCTCCCCACCTCCAACAG
CACCCCTCCTCCTCTTCATCGCAATTTGGCGCCGACTTCTTTTCTGCCCC
TCAATTTCCCTCTCCTCCCCAGCCGCAACCTTCCACCTTTTACCCTTCCC
CACCTCCTCCGCCTCCGCAGCAGCAGCAGCAGCAGTACCAGCAGCAGAGG
CAGCCGCAGCCGGTTTACGATGGCGGGGTTGGACAAGCGAAAGGAGGAGC
GCCTCATCAAGGCTGTTAAGGACTTGAGCAAACTCCCTCCCAATAAGCGC
TGCGCAGACTGCACAGAGAAGCTGCCGCAGTACGTAAACCTCACGTTCAG
CACCTTCATTTGCACAG back to top
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