jgi.p|Nanoce1779_2|119296, mRNA_6998 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|119296
Unique Name	mRNA_6998
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1275
Alignment location	scaffold_17:665232..667389 +

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Properties


Property Name	Value
TranscriptId	119382
Track	FilteredModels2
ProteinId	119296

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:665232..667389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|119296	gene_6998	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|119296	mRNA_6998-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6998	CDS_6998	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:665232..667389+
coding sequence from alignment at scaffold_17:665232..667389+

mRNA sequence

>mRNA_6998 ID=mRNA_6998|Name=jgi.p|Nanoce1779_2|119296|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
CAGCGGCGGCCCCTTGCGCGGCGGCCAACAACAGAAAACGGGCAGGCCCC
GGCCTGGGTTGGCATCAACCAGTGACCATGTCGGTACGTAGTGAGGGAAA
GCGAGGGGATGGGAAGGAAAGAGGCTTTCGTGTACATGGCGTGGTTGTTA
CTCATACTCTTCCCCTTTGTCCTCCCATTCCGTCACTCTCCACAGGCCGT
GGCACACAACAGCCACACCGCCTCAGTCCCCGCCGCACACACCACCCACA
CTCATTCCCCGCATGTGCCCTCCCCTACCACCGTGGCTCCACCTGAGCAG
CCAGTTATTAACCAATACCCCGTTTTCCCCCGCGCCGCTGTGAATATCGT
CGTCGTTCGCGCGCGCCCCCTTAACATGGGCCGTGAGTACCTGTTTGTGC
AGCGAAGCAAGGAGCCCGGGACGGACCAATGGGCATTACCAGGAGGGAGC
GTGGAGATCGGCGAGGAGATGCTGCAAGCCGCCGCCCGGGAGCTCGTGGA
GGAGACGACTCTTGACCACTCTGTTCTCGAGTTTTATCCGCGTTGCTTCA
TGACCACAGACGCTATTTACAATGACGACATGGGAGCCGTTAAATACCAC
TTCGTCATCTCTCAGATGGTGTGCTGGGCCTCCCCCGAGGCTGCTCCCAT
CGCCGCCGACGATGCCAAGGACATTCGTTGGATGACACTGCCGCAACTAC
GTGGATTGGACACCGACGCGATCTTCCGGGGTGTAATAGAGGTGGTGGAG
ACGGTGGAGCGCCTCGTGGACGTAGGCTGCATCACGAAGGCCGACCTGGT
CCGTGTCCCCGTAGCACCAGACGGAACGATGCTACCCACCCCCCCTCCCT
CCTCCCCTTCCTCCTCCTCGGGCATCGGACTGGCCGACGACGGGGGCCAC
ATCCAAGGACCCAACGACTTGATTCCCCGCAGGAGGAACTGAAGGAGGGA
GGGAGGGAGAGACGGTGAATTCTCCCTCTGAGATGATTTTCTCGCTTCCT
TTGAGCTCCTTCGCGCCCTTCAGATGTCTGTCTGGTTAGTGACGGTCGAG
GGAGGGAAGGGGGGAGGAGGTATCAAAAGCTAATTGTAGAATGAGTTTTT
GATTTTATTTTTAATTTCACTTGAAATTTATTTTTTATTGTCTGTCGGTA
GAACTAGGAAAGGGTTGATATGGTAGAAAAAGAAGAGCAGCACCAGCAAC
GTTGTGGTGTCTTGTGAAGAGGATTCGCGGAAGAGGGGGGCGGGAGATGA
GGGGGAGGGAAGCAATGCAGGTGTA

protein sequence of jgi.p|Nanoce1779_2|119296

>mRNA_6998-protein ID=mRNA_6998-protein|Name=jgi.p|Nanoce1779_2|119296|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MGRKEAFVYMAWLLLILFPFVLPFRHSPQAVAHNSHTASVPAAHTTHTHS
PHVPSPTTVAPPEQPVINQYPVFPRAAVNIVVVRARPLNMGREYLFVQRS
KEPGTDQWALPGGSVEIGEEMLQAAARELVEETTLDHSVLEFYPRCFMTT
DAIYNDDMGAVKYHFVISQMVCWASPEAAPIAADDAKDIRWMTLPQLRGL
DTDAIFRGVIEVVETVERLVDVGCITKADLVRVPVAPDGTMLPTPPPSSP
SSSSGIGLADDGGHIQGPNDLIPRRRN*

mRNA from alignment at scaffold_17:665232..667389+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6998 ID=mRNA_6998|Name=jgi.p|Nanoce1779_2|119296|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp|location=Sequence derived from alignment at scaffold_17:665232..667389+ (Nannochloropsis oceanica)
CAGCGGCGGCCCCTTGCGCGGCGGCCAACAACAGAAAACGGGCAGGCCCC
GGCCTGGGTTGGCATCAACCAGTGACCATGTCGGTACGTAGTGAGGGAAA
GCGAGGGGATGGGAAGGAAAGAGGCTTTCGTGTACATGGCGTGGTTGTTA
CTCATACTCTTCCCCTTTGTCCTCCCATTCCGTCACTCTCCACAGGCCGT
GGCACACAACAGCCACACCGCCTCAGTCCCCGCCGCACACACCACCCACA
CTCATTCCCCGCATGTGCCCTCCCCTACCACCGTGGCTCCACCTGAGCAG
CCAGTTATTAACCAATACCCCGTTTTCCCCCGCGCCGCTGTGAATATCGG
TACGTGTCTGTCTGTATGGTTCATCCCTGACCTCCCTCCTTCTTACCGGC
GTCTAGGGAGGGATTGCTTTAAGTCTGTTATATCATTACTCACCAATATG
AGTAGCGTTATATCTCTAATGCAATAGCTAGTGCCTTGGCTTTTTAACTC
CAACATGACGAGTGCAATTCAAGCACCCTCACTTCCCTCGCCCTTCCTCT
TTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCCACCCCCTTCGAT
CTCTAGTCGTCGTTCGCGCGCGCCCCCTTAACATGGGCCGTGAGTACCTG
TTTGTGCAGCGAAGCAAGGAGCCCGGGACGGACCAATGGGCATTACCAGG
AGGGAGGTAGGTAGAGGGGGAGGGAGGGAGGGAGCGAAGGTTGCGGGAAT
GAAAGAGGAAGTTCAAGGTTTTTCCCGGATACAGACGCCATCGCTCACCT
CCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCCCCCGATCTC
CTTCACCCCAGCGTGGAGATCGGCGAGGAGATGCTGCAAGCCGCCGCCCG
GGAGCTCGTGGAGGAGACGACTCTTGACCACTCTGTTCTCGAGTTTTATC
CGCGTTGCTTCATGACCACAGACGCTATTTACAATGACGACATGGGAGCC
GTTAAATACCACTTCGTCATCTCTCAGGTACGGACCTCCGCCCTCCCTCC
GCCCTCCCTCCCGCCCTCCCTCCCGCCCTCCTTTCGGCGCCCCGTCTCGG
TTGTTCCATATGGTTCTCACATGAACCTCTCCCTCCCTCCCTCTCCTACC
TCAGATGGTGTGCTGGGCCTCCCCCGAGGCTGCTCCCATCGCCGCCGACG
ATGCCAAGGACATTCGTTGGATGACACTGCCGCAACTACGTGGATTGGAC
GTGAGTCGGAGAGAGAGAGAGGGAGGGGGGGGGGGGTTGGTCGGTGTGTT
GTGTACTGATAATAATGTGTAGTGTCGTCTCCTCCTGATCCCGGTGTATT
TTACCTTGATGATTGTAAATTCTATCGCTCCCCCCTCTCCTCAATCACTC
AACAGACTCCGGTCCACTCACCCCCCCCCCCTCCCCCCTCCCTCCCTCCC
TCCCTCCCTCTAGACCGACGCGATCTTCCGGGGTGTAATAGAGGTGGTGG
AGACGGTGGAGCGCCTCGTGGACGTAGGCTGCATCACGAAGGCCGACCTG
GTGCGTGGGAGAGAGGGGAGGGACGGAGGGGGGGCTCACTCAGTCTATGT
GTCTATTGAGCTCTTTCGGTGCATCTGACACGACTCCCTCCTCCCCTCCC
TCCCTCCCTCCCTCCCCTCTCAACCAATCAGGTCCGTGTCCCCGTAGCAC
CAGACGGAACGATGCTACCCACCCCCCCTCCCTCCTCCCCTTCCTCCTCC
TCGGGCATCGGACTGGCCGACGACGGGGGCCACATCCAAGGACCCAACGA
CTTGATTCCCCGCAGGAGGAACTGAAGGAGGGAGGGAGGGAGAGACGGTG
AATTCTCCCTCTGAGATGATTTTCTCGCTTCCTTTGAGCTCCTTCGCGCC
CTTCAGATGTCTGTCTGGTTAGTGACGGTCGAGGGAGGGAAGGGGGGAGG
AGGTATCAAAAGCTAATTGTAGAATGAGTTTTTGATTTTATTTTTAATTT
CACTTGAAATTTATTTTTTATTGTCTGTCGGTAGAACTAGGAAAGGGTTG
ATATGGTAGAAAAAGAAGAGCAGCACCAGCAACGTTGTGGTGTCTTGTGA
AGAGGATTCGCGGAAGAGGGGGGCGGGAGATGAGGGGGAGGGAAGCAATG
CAGGTGTA

Coding sequence (CDS) from alignment at scaffold_17:665232..667389+

>mRNA_6998 ID=mRNA_6998|Name=jgi.p|Nanoce1779_2|119296|organism=Nannochloropsis oceanica|type=CDS|length=5004bp|location=Sequence derived from alignment at scaffold_17:665232..667389+ (Nannochloropsis oceanica)
ATGGGAAGGAAAGAGGCTTTCGTGTACATGGCGTGGTTGTTACTCATACT
CTTCCCCTTTGTCCTCCCATTCCGTCACTCTCCACAGGCCGTGGCACACA
ACAGCCACACCGCCTCAGTCCCCGCCGCACACACCACCCACACTCATTCC
CCGCATGTGCCCTCCCCTACCACCGTGGCTCCACCTGAGCAGCCAGTTAT
TAACCAATACCCCGTTTTCCCCCGCGCCGCTGTGAATATCGTCGTCGTTC
GCGCGCGCCCCCTTAACATGGGCCGTGAGTACCTGTTTGTGCAGCGAAGC
AAGGAGCCCGGGACGGACCAATGGGCATTACCAGGAGGGAGCGTGGAGAT
CGGCGAGGAGATGCTGCAAGCCGCCGCCCGGGAGCTCGTGGAGGAGACGA
CTCTTGACCACTCTGTTCTCGAGTTTTATCCGCGTTGCTTCATGACCACA
GACGCTATTTACAATGACGACATGGGAGCCGTTAAATACCACTTCGTCAT
CTCTCAGATGGTGTGCTGGGCCTCCCCCGAGGCTGCTCCCATCGCCGCCG
ACGATGCCAAGGACATTCGTTGGATGACACTGCCGCAACTACGTGGATTG
GACACCGACGCGATCTTCCGGGGTGTAATAGAGGTGGTGGAGACGGTGGA
GCGCCTCGTGGACGTAGGCTGCATCACGAAGGCCGACCTGGTCCGTGTCC
CCGTAGCACCAGACGGAACGATGCTACCCACCCCCCCTCCCTCCTCCCCT
TCCTCCTCCTCGGGCATCGGACTGGCCGACGACGGGGGCCACATCCAAGG
ACCCAACGACTTGATTCCCCGCAGGAGGAACTGAATGGGAAGGAAAGAGG
CTTTCGTGTACATGGCGTGGTTGTTACTCATACTCTTCCCCTTTGTCCTC
CCATTCCGTCACTCTCCACAGGCCGTGGCACACAACAGCCACACCGCCTC
AGTCCCCGCCGCACACACCACCCACACTCATTCCCCGCATGTGCCCTCCC
CTACCACCGTGGCTCCACCTGAGCAGCCAGTTATTAACCAATACCCCGTT
TTCCCCCGCGCCGCTGTGAATATCGTCGTCGTTCGCGCGCGCCCCCTTAA
CATGGGCCGTGAGTACCTGTTTGTGCAGCGAAGCAAGGAGCCCGGGACGG
ACCAATGGGCATTACCAGGAGGGAGCGTGGAGATCGGCGAGGAGATGCTG
CAAGCCGCCGCCCGGGAGCTCGTGGAGGAGACGACTCTTGACCACTCTGT
TCTCGAGTTTTATCCGCGTTGCTTCATGACCACAGACGCTATTTACAATG
ACGACATGGGAGCCGTTAAATACCACTTCGTCATCTCTCAGATGGTGTGC
TGGGCCTCCCCCGAGGCTGCTCCCATCGCCGCCGACGATGCCAAGGACAT
TCGTTGGATGACACTGCCGCAACTACGTGGATTGGACACCGACGCGATCT
TCCGGGGTGTAATAGAGGTGGTGGAGACGGTGGAGCGCCTCGTGGACGTA
GGCTGCATCACGAAGGCCGACCTGGTCCGTGTCCCCGTAGCACCAGACGG
AACGATGCTACCCACCCCCCCTCCCTCCTCCCCTTCCTCCTCCTCGGGCA
TCGGACTGGCCGACGACGGGGGCCACATCCAAGGACCCAACGACTTGATT
CCCCGCAGGAGGAACTGAATGGGAAGGAAAGAGGCTTTCGTGTACATGGC
GTGGTTGTTACTCATACTCTTCCCCTTTGTCCTCCCATTCCGTCACTCTC
CACAGGCCGTGGCACACAACAGCCACACCGCCTCAGTCCCCGCCGCACAC
ACCACCCACACTCATTCCCCGCATGTGCCCTCCCCTACCACCGTGGCTCC
ACCTGAGCAGCCAGTTATTAACCAATACCCCGTTTTCCCCCGCGCCGCTG
TGAATATCGTCGTCGTTCGCGCGCGCCCCCTTAACATGGGCCGTGAGTAC
CTGTTTGTGCAGCGAAGCAAGGAGCCCGGGACGGACCAATGGGCATTACC
AGGAGGGAGCGTGGAGATCGGCGAGGAGATGCTGCAAGCCGCCGCCCGGG
AGCTCGTGGAGGAGACGACTCTTGACCACTCTGTTCTCGAGTTTTATCCG
CGTTGCTTCATGACCACAGACGCTATTTACAATGACGACATGGGAGCCGT
TAAATACCACTTCGTCATCTCTCAGATGGTGTGCTGGGCCTCCCCCGAGG
CTGCTCCCATCGCCGCCGACGATGCCAAGGACATTCGTTGGATGACACTG
CCGCAACTACGTGGATTGGACACCGACGCGATCTTCCGGGGTGTAATAGA
GGTGGTGGAGACGGTGGAGCGCCTCGTGGACGTAGGCTGCATCACGAAGG
CCGACCTGGTCCGTGTCCCCGTAGCACCAGACGGAACGATGCTACCCACC
CCCCCTCCCTCCTCCCCTTCCTCCTCCTCGGGCATCGGACTGGCCGACGA
CGGGGGCCACATCCAAGGACCCAACGACTTGATTCCCCGCAGGAGGAACT
GAATGGGAAGGAAAGAGGCTTTCGTGTACATGGCGTGGTTGTTACTCATA
CTCTTCCCCTTTGTCCTCCCATTCCGTCACTCTCCACAGGCCGTGGCACA
CAACAGCCACACCGCCTCAGTCCCCGCCGCACACACCACCCACACTCATT
CCCCGCATGTGCCCTCCCCTACCACCGTGGCTCCACCTGAGCAGCCAGTT
ATTAACCAATACCCCGTTTTCCCCCGCGCCGCTGTGAATATCGTCGTCGT
TCGCGCGCGCCCCCTTAACATGGGCCGTGAGTACCTGTTTGTGCAGCGAA
GCAAGGAGCCCGGGACGGACCAATGGGCATTACCAGGAGGGAGCGTGGAG
ATCGGCGAGGAGATGCTGCAAGCCGCCGCCCGGGAGCTCGTGGAGGAGAC
GACTCTTGACCACTCTGTTCTCGAGTTTTATCCGCGTTGCTTCATGACCA
CAGACGCTATTTACAATGACGACATGGGAGCCGTTAAATACCACTTCGTC
ATCTCTCAGATGGTGTGCTGGGCCTCCCCCGAGGCTGCTCCCATCGCCGC
CGACGATGCCAAGGACATTCGTTGGATGACACTGCCGCAACTACGTGGAT
TGGACACCGACGCGATCTTCCGGGGTGTAATAGAGGTGGTGGAGACGGTG
GAGCGCCTCGTGGACGTAGGCTGCATCACGAAGGCCGACCTGGTCCGTGT
CCCCGTAGCACCAGACGGAACGATGCTACCCACCCCCCCTCCCTCCTCCC
CTTCCTCCTCCTCGGGCATCGGACTGGCCGACGACGGGGGCCACATCCAA
GGACCCAACGACTTGATTCCCCGCAGGAGGAACTGAATGGGAAGGAAAGA
GGCTTTCGTGTACATGGCGTGGTTGTTACTCATACTCTTCCCCTTTGTCC
TCCCATTCCGTCACTCTCCACAGGCCGTGGCACACAACAGCCACACCGCC
TCAGTCCCCGCCGCACACACCACCCACACTCATTCCCCGCATGTGCCCTC
CCCTACCACCGTGGCTCCACCTGAGCAGCCAGTTATTAACCAATACCCCG
TTTTCCCCCGCGCCGCTGTGAATATCGTCGTCGTTCGCGCGCGCCCCCTT
AACATGGGCCGTGAGTACCTGTTTGTGCAGCGAAGCAAGGAGCCCGGGAC
GGACCAATGGGCATTACCAGGAGGGAGCGTGGAGATCGGCGAGGAGATGC
TGCAAGCCGCCGCCCGGGAGCTCGTGGAGGAGACGACTCTTGACCACTCT
GTTCTCGAGTTTTATCCGCGTTGCTTCATGACCACAGACGCTATTTACAA
TGACGACATGGGAGCCGTTAAATACCACTTCGTCATCTCTCAGATGGTGT
GCTGGGCCTCCCCCGAGGCTGCTCCCATCGCCGCCGACGATGCCAAGGAC
ATTCGTTGGATGACACTGCCGCAACTACGTGGATTGGACACCGACGCGAT
CTTCCGGGGTGTAATAGAGGTGGTGGAGACGGTGGAGCGCCTCGTGGACG
TAGGCTGCATCACGAAGGCCGACCTGGTCCGTGTCCCCGTAGCACCAGAC
GGAACGATGCTACCCACCCCCCCTCCCTCCTCCCCTTCCTCCTCCTCGGG
CATCGGACTGGCCGACGACGGGGGCCACATCCAAGGACCCAACGACTTGA
TTCCCCGCAGGAGGAACTGAATGGGAAGGAAAGAGGCTTTCGTGTACATG
GCGTGGTTGTTACTCATACTCTTCCCCTTTGTCCTCCCATTCCGTCACTC
TCCACAGGCCGTGGCACACAACAGCCACACCGCCTCAGTCCCCGCCGCAC
ACACCACCCACACTCATTCCCCGCATGTGCCCTCCCCTACCACCGTGGCT
CCACCTGAGCAGCCAGTTATTAACCAATACCCCGTTTTCCCCCGCGCCGC
TGTGAATATCGTCGTCGTTCGCGCGCGCCCCCTTAACATGGGCCGTGAGT
ACCTGTTTGTGCAGCGAAGCAAGGAGCCCGGGACGGACCAATGGGCATTA
CCAGGAGGGAGCGTGGAGATCGGCGAGGAGATGCTGCAAGCCGCCGCCCG
GGAGCTCGTGGAGGAGACGACTCTTGACCACTCTGTTCTCGAGTTTTATC
CGCGTTGCTTCATGACCACAGACGCTATTTACAATGACGACATGGGAGCC
GTTAAATACCACTTCGTCATCTCTCAGATGGTGTGCTGGGCCTCCCCCGA
GGCTGCTCCCATCGCCGCCGACGATGCCAAGGACATTCGTTGGATGACAC
TGCCGCAACTACGTGGATTGGACACCGACGCGATCTTCCGGGGTGTAATA
GAGGTGGTGGAGACGGTGGAGCGCCTCGTGGACGTAGGCTGCATCACGAA
GGCCGACCTGGTCCGTGTCCCCGTAGCACCAGACGGAACGATGCTACCCA
CCCCCCCTCCCTCCTCCCCTTCCTCCTCCTCGGGCATCGGACTGGCCGAC
GACGGGGGCCACATCCAAGGACCCAACGACTTGATTCCCCGCAGGAGGAA
CTGA

Synonyms

Publications