jgi.p|Nanoce1779_2|597125, mRNA_6997 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|597125
Unique Name	mRNA_6997
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1712
Alignment location	scaffold_17:663136..664847 +

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Properties


Property Name	Value
TranscriptId	597211
Track	FilteredModels2
ProteinId	597125

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:663136..664847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597125	gene_6997	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|597125	mRNA_6997-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6997	CDS_6997	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:663136..664847+
coding sequence from alignment at scaffold_17:663136..664847+

mRNA sequence

>mRNA_6997 ID=mRNA_6997|Name=jgi.p|Nanoce1779_2|597125|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp
TTTATTATTGTGCCTTCATCCTTCTTTTACATGACTGCGTGGAGCTGGGG
GCTGTACGAAGGATGGCTCAAAGACGGCGATAGGTACGTCGGTGGACATC
CACTCAACATACCTGGTTTCTATGTTTCCGTCTCCATCCTCTCTTTGCGA
GTGCTCCACAACTCCTGTGGCCCAGCAGCCCCTGCGACGGCATGGGAAAG
CATCCAAGCGGAAACCAGGAAATGGGGACAAGTATTAAATAATTTAGAGA
TGCAAAACAAAAAGGCTTTGATTGCACAAAAAGTAGTTTTGTTGCGTCCC
CTTGCCTTGTGTTCCAAGGTTTTATCGGCGAAGTTTATAATCGCCGCCCG
AGGAGCATCTATCAAGAGGAGTGGACGACCGAGCAACAAAACACTCAAGT
CCCATGACCATGACCACGACGCATCTTAATTCCAGAAATGTCACTTTTTG
TCAACCCTCCTCATTCGTTAGTCTCACTAGTGTAGCCCTCTTCCAGCTCT
TTCGATGTGTCGCTCGAGCCATTGTTCTTCGTGCGTGGGGGCAGGTCATT
TCAAACCACGTACCACTGTCATGTTCGACGCGTCACCTGCACCACTGCCA
TGGCATTGCTTTTGCTTTCTTAACCGCAGCATTCTGGCTTGTCAAAGTTT
CTCGAAAGGCGCCTGCACAAAGGCACCATTTCATGTCCCAGGTGTCTTCG
AGCCATTGTTCTTGTCCTTTCCGCTCTTCCTCTCCCTGGCCCCCGAGCCA
GCAGGCGAGGGGCGGGCGCGTCGGGCAGCCTCGTCACATGACTTTTTGGG
GTTCACTTTTCCCTCCAATATTTTCTGCCTCGCTTTTGCCTCCCGAAAAA
CCGCTCTTGGTATTCAACCATTACCACGACGTAGCTCACACATCTGACAA
GACGTGCTTGTCTTCTTAAAATCCTCTGGGCGCTCTTTGATGGGACAAGA
GGAGCATGCTAAAAACCAGGAGGTGGCGGGCGAGGAGGCCTATCGCCCTC
GAGCGAGCCTCTCCGTCCCAGCCCTCCCCTTTCCTCCTTCCTTCATACAA
ATCTGCGCTCGATGGACACGCTGGCATTCTTCGTAGGCATGCCGTAGAGA
TGACGGCCTTATTTCTTTTGATGTCGCTGAACAGCGTGTGCTAGATGCTC
TCAACACCTGGCAGATGCCCCTTTGCGTGTTTGGGGCTTGGTTGTTCGGC
GCGGAGAATTGTTCTTGCCCAACAAGACGTCAGTACCGACGTGTTTTTTG
TCATGAAGACCACCAGGACCTAGGAGACCAGGTCAAGCACTATACTCCAC
GATTGGCGGCCTTGTCGTGCACCGCACTCCCATGGCTTAGCCATTTCGAC
CACGACACGTGGAAGCCCTGCATGTGATGATCGCGAGGCACCCGGAGGGG
GCGACGCGACGAAGGAAATGGAATGCCCTTTGTTCGGAAAGACGATGGCA
GCCTATTGTTTCATGGGTACAGAGGCTGTCGCACGCGGCGGCAAGGGCCT
AGCGATAACATCTTCATCTTTCACCATCACATAACCCCATTCTCAGCAGC
CACCTTGCACGAGGGCAGCGGCGGGCTAAGCGGACGTTCCAAATCTATCC
CAGGCGGTCTTCGTTTTCTGTGCCCTTTCGATGCACTCTTTTTTTTACCA
TGAAGGTCATGAAAAGCTTCCCACACTCATCTCTACCCTTTCCACACACT
CGTAACACACCA

protein sequence of jgi.p|Nanoce1779_2|597125

>mRNA_6997-protein ID=mRNA_6997-protein|Name=jgi.p|Nanoce1779_2|597125|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MTMTTTHLNSRNVTFCQPSSFVSLTSVALFQLFRCVARAIVLRAWGQVIS
NHVPLSCSTRHLHHCHGIAFAFLTAAFWLVKVSRKAPAQRHHFMSQVSSS
HCSCPFRSSSPWPPSQQARGGRVGQPRHMTFWGSLFPPIFSASLLPPEKP
LLVFNHYHDVAHTSDKTCLSS*

mRNA from alignment at scaffold_17:663136..664847+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6997 ID=mRNA_6997|Name=jgi.p|Nanoce1779_2|597125|organism=Nannochloropsis oceanica|type=mRNA|length=1712bp|location=Sequence derived from alignment at scaffold_17:663136..664847+ (Nannochloropsis oceanica)
TTTATTATTGTGCCTTCATCCTTCTTTTACATGACTGCGTGGAGCTGGGG
GCTGTACGAAGGATGGCTCAAAGACGGCGATAGGTACGTCGGTGGACATC
CACTCAACATACCTGGTTTCTATGTTTCCGTCTCCATCCTCTCTTTGCGA
GTGCTCCACAACTCCTGTGGCCCAGCAGCCCCTGCGACGGCATGGGAAAG
CATCCAAGCGGAAACCAGGAAATGGGGACAAGTATTAAATAATTTAGAGA
TGCAAAACAAAAAGGCTTTGATTGCACAAAAAGTAGTTTTGTTGCGTCCC
CTTGCCTTGTGTTCCAAGGTTTTATCGGCGAAGTTTATAATCGCCGCCCG
AGGAGCATCTATCAAGAGGAGTGGACGACCGAGCAACAAAACACTCAAGT
CCCATGACCATGACCACGACGCATCTTAATTCCAGAAATGTCACTTTTTG
TCAACCCTCCTCATTCGTTAGTCTCACTAGTGTAGCCCTCTTCCAGCTCT
TTCGATGTGTCGCTCGAGCCATTGTTCTTCGTGCGTGGGGGCAGGTCATT
TCAAACCACGTACCACTGTCATGTTCGACGCGTCACCTGCACCACTGCCA
TGGCATTGCTTTTGCTTTCTTAACCGCAGCATTCTGGCTTGTCAAAGTTT
CTCGAAAGGCGCCTGCACAAAGGCACCATTTCATGTCCCAGGTGTCTTCG
AGCCATTGTTCTTGTCCTTTCCGCTCTTCCTCTCCCTGGCCCCCGAGCCA
GCAGGCGAGGGGCGGGCGCGTCGGGCAGCCTCGTCACATGACTTTTTGGG
GTTCACTTTTCCCTCCAATATTTTCTGCCTCGCTTTTGCCTCCCGAAAAA
CCGCTCTTGGTATTCAACCATTACCACGACGTAGCTCACACATCTGACAA
GACGTGCTTGTCTTCTTAAAATCCTCTGGGCGCTCTTTGATGGGACAAGA
GGAGCATGCTAAAAACCAGGAGGTGGCGGGCGAGGAGGCCTATCGCCCTC
GAGCGAGCCTCTCCGTCCCAGCCCTCCCCTTTCCTCCTTCCTTCATACAA
ATCTGCGCTCGATGGACACGCTGGCATTCTTCGTAGGCATGCCGTAGAGA
TGACGGCCTTATTTCTTTTGATGTCGCTGAACAGCGTGTGCTAGATGCTC
TCAACACCTGGCAGATGCCCCTTTGCGTGTTTGGGGCTTGGTTGTTCGGC
GCGGAGAATTGTTCTTGCCCAACAAGACGTCAGTACCGACGTGTTTTTTG
TCATGAAGACCACCAGGACCTAGGAGACCAGGTCAAGCACTATACTCCAC
GATTGGCGGCCTTGTCGTGCACCGCACTCCCATGGCTTAGCCATTTCGAC
CACGACACGTGGAAGCCCTGCATGTGATGATCGCGAGGCACCCGGAGGGG
GCGACGCGACGAAGGAAATGGAATGCCCTTTGTTCGGAAAGACGATGGCA
GCCTATTGTTTCATGGGTACAGAGGCTGTCGCACGCGGCGGCAAGGGCCT
AGCGATAACATCTTCATCTTTCACCATCACATAACCCCATTCTCAGCAGC
CACCTTGCACGAGGGCAGCGGCGGGCTAAGCGGACGTTCCAAATCTATCC
CAGGCGGTCTTCGTTTTCTGTGCCCTTTCGATGCACTCTTTTTTTTACCA
TGAAGGTCATGAAAAGCTTCCCACACTCATCTCTACCCTTTCCACACACT
CGTAACACACCA

Coding sequence (CDS) from alignment at scaffold_17:663136..664847+

>mRNA_6997 ID=mRNA_6997|Name=jgi.p|Nanoce1779_2|597125|organism=Nannochloropsis oceanica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_17:663136..664847+ (Nannochloropsis oceanica)
ATGACCATGACCACGACGCATCTTAATTCCAGAAATGTCACTTTTTGTCA
ACCCTCCTCATTCGTTAGTCTCACTAGTGTAGCCCTCTTCCAGCTCTTTC
GATGTGTCGCTCGAGCCATTGTTCTTCGTGCGTGGGGGCAGGTCATTTCA
AACCACGTACCACTGTCATGTTCGACGCGTCACCTGCACCACTGCCATGG
CATTGCTTTTGCTTTCTTAACCGCAGCATTCTGGCTTGTCAAAGTTTCTC
GAAAGGCGCCTGCACAAAGGCACCATTTCATGTCCCAGGTGTCTTCGAGC
CATTGTTCTTGTCCTTTCCGCTCTTCCTCTCCCTGGCCCCCGAGCCAGCA
GGCGAGGGGCGGGCGCGTCGGGCAGCCTCGTCACATGACTTTTTGGGGTT
CACTTTTCCCTCCAATATTTTCTGCCTCGCTTTTGCCTCCCGAAAAACCG
CTCTTGGTATTCAACCATTACCACGACGTAGCTCACACATCTGACAAGAC
GTGCTTGTCTTCTTAA

Synonyms

Publications