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Properties
| Property Name | Value |
|---|
| TranscriptId | 119324 |
| Track | FilteredModels2 |
| ProteinId | 119238 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:658693..660087 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6995 ID=mRNA_6995|Name=jgi.p|Nanoce1779_2|119238|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp
GTGTGACGGTCGGAAGAGGCTGAGTGCGAGAGGGATGTCATTATTATGTT
GCCTGCGTTCCTTTTCGCTTGATTGATGTGTTGTGTTGTTCAGATTCAGT
CTCGCTGGGGCATGCCTCTGCCGGATAATATTTACGAATAGGGTTGCCCT
GCCGACTCCAGAACCAAGCAAACAATGTGCAAATATACAACCTCACGCCT
GTGAACCCAAAATGAGGAGCCTGTCCCTTGTCTTGTGCTGTGGGTCAGAT
AATCACGTGCCCTTTCACATATGTCCTTCAGTCACGGAACGAGCGACGAG
CGTGAGCGACTCGAAAGGCGACGTGTATACGAAATGCAGCCGCTGCGCTC
AGAACCCACGACCAAAACGCCCACGGACTCACCATCCTATTATCTGGTTC
CCATAACCACAGGATCAAAGGGAATCTCTTCCTGCCATTGGGCACTGGTG
CCGGTGTATGTGCATTGCCTTTGCTTAGCACTGTCCTGGAAAGACCCCCC
GAAAATCACAACCATAAAACCCAGGCCGCTGCAAGCAGCAAAAGAGCGGA
GGTTCTCCTTACAAAAACAGCCTCAAGCATCAGCAGTAGCAATGCCACGA
GGCAGCACCGTACCATCCCTCTCCTCCTCCTCCTCCTCCTCCTTTTCCGG
CGTGTCGGTCCTGGGCCTGTTCGTTCTAAGTGTCACCCTTACGAGCATCG
TTACACAAGCCTTTATCCTGCCCCTTCCTTCTTCCGCCCTCCCTCGACGG
GCGCCGGCAGGCACTTTTTCCGGTCTGACGCGCTCCGCCCGCGGAAGCGG
AAGCGGGGGCGGCAGTCCGGGACCACGTCCGTCCTTTCGAGACATCGAAG
AGGAGGAATACGAGGGCGAGGAGGAGGAGGAGGAAAAGGAGTATGACGAC
GACGATGAGGTCGCCCGGATGTACGTTTTGCGGGTGTTTCTCGTGACCAG
GGAAGGAGGGGCAAGAGGTCGGGGATGTGATGCTTATTTTCTCCAGACCA
TTCTCTCACTCTCTTGGGCTTGTCTCTCGTTCCACCCACAGCCATCATCA
TCACAAACACATATGAGAGAGGGCTCTAATAGGATACACTTACCCCAGGA
TGACCGTCGACTCAACTCCCCCTCCCTCTCTCTCTCCCTTCTTTCCTTCC
TCCCTACCCCTCCACTCTTTCAGCGTGGGCGTCGGTCGCGAAGGCCGCCC
CGTGCGCCGCGGGAAGAACGTGGTGTTGGAGTGGCTGCGTGACGTGTACC
ATCGGATCTTCTGGTTCGGCCTGGACGAGCTGGATGACGAGGACGAGGAC
TACTACCTCGATGAGATCGACTGGCTCGGTACGTGCCTTTCCTTTCTCCC
CCCTTCCTCCCTCCCTCCCTTGCTTCCTCACTTGCCCTCTCTCCC back to topprotein sequence of jgi.p|Nanoce1779_2|119238 >mRNA_6995-protein ID=mRNA_6995-protein|Name=jgi.p|Nanoce1779_2|119238|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MSFSHGTSDERERLERRRVYEMQPLRSEPTTKTPTDSPSYYLVPITTGSK
GISSCHWALVPVYVHCLCLALSWKDPPKITTIKPRPLQAAKERRFSLQKQ
PQASAVAMPRGSTVPSLSSSSSSSFSGVSVLGLFVLSVTLTSIVTQAFIL
PLPSSALPRRAPAGTFSGLTRSARGSGSGGGSPGPRPSFRDIEEEEYEGE
EEEEEKEYDDDDEVARMYVLRVFLVTREGGARGRGCDAYFLQTILSLSWA
CLSFHPQPSSSQTHMREGSNRIHLPQDDRRLNSPSLSLSLLSFLPTPPLF
QRGRRSRRPPRAPREERGVGVAA* back to topmRNA from alignment at scaffold_17:658693..660087- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6995 ID=mRNA_6995|Name=jgi.p|Nanoce1779_2|119238|organism=Nannochloropsis oceanica|type=mRNA|length=1395bp|location=Sequence derived from alignment at scaffold_17:658693..660087- (Nannochloropsis oceanica)
GTGTGACGGTCGGAAGAGGCTGAGTGCGAGAGGGATGTCATTATTATGTT
GCCTGCGTTCCTTTTCGCTTGATTGATGTGTTGTGTTGTTCAGATTCAGT
CTCGCTGGGGCATGCCTCTGCCGGATAATATTTACGAATAGGGTTGCCCT
GCCGACTCCAGAACCAAGCAAACAATGTGCAAATATACAACCTCACGCCT
GTGAACCCAAAATGAGGAGCCTGTCCCTTGTCTTGTGCTGTGGGTCAGAT
AATCACGTGCCCTTTCACATATGTCCTTCAGTCACGGAACGAGCGACGAG
CGTGAGCGACTCGAAAGGCGACGTGTATACGAAATGCAGCCGCTGCGCTC
AGAACCCACGACCAAAACGCCCACGGACTCACCATCCTATTATCTGGTTC
CCATAACCACAGGATCAAAGGGAATCTCTTCCTGCCATTGGGCACTGGTG
CCGGTGTATGTGCATTGCCTTTGCTTAGCACTGTCCTGGAAAGACCCCCC
GAAAATCACAACCATAAAACCCAGGCCGCTGCAAGCAGCAAAAGAGCGGA
GGTTCTCCTTACAAAAACAGCCTCAAGCATCAGCAGTAGCAATGCCACGA
GGCAGCACCGTACCATCCCTCTCCTCCTCCTCCTCCTCCTCCTTTTCCGG
CGTGTCGGTCCTGGGCCTGTTCGTTCTAAGTGTCACCCTTACGAGCATCG
TTACACAAGCCTTTATCCTGCCCCTTCCTTCTTCCGCCCTCCCTCGACGG
GCGCCGGCAGGCACTTTTTCCGGTCTGACGCGCTCCGCCCGCGGAAGCGG
AAGCGGGGGCGGCAGTCCGGGACCACGTCCGTCCTTTCGAGACATCGAAG
AGGAGGAATACGAGGGCGAGGAGGAGGAGGAGGAAAAGGAGTATGACGAC
GACGATGAGGTCGCCCGGATGTACGTTTTGCGGGTGTTTCTCGTGACCAG
GGAAGGAGGGGCAAGAGGTCGGGGATGTGATGCTTATTTTCTCCAGACCA
TTCTCTCACTCTCTTGGGCTTGTCTCTCGTTCCACCCACAGCCATCATCA
TCACAAACACATATGAGAGAGGGCTCTAATAGGATACACTTACCCCAGGA
TGACCGTCGACTCAACTCCCCCTCCCTCTCTCTCTCCCTTCTTTCCTTCC
TCCCTACCCCTCCACTCTTTCAGCGTGGGCGTCGGTCGCGAAGGCCGCCC
CGTGCGCCGCGGGAAGAACGTGGTGTTGGAGTGGCTGCGTGACGTGTACC
ATCGGATCTTCTGGTTCGGCCTGGACGAGCTGGATGACGAGGACGAGGAC
TACTACCTCGATGAGATCGACTGGCTCGGTACGTGCCTTTCCTTTCTCCC
CCCTTCCTCCCTCCCTCCCTTGCTTCCTCACTTGCCCTCTCTCCC back to topCoding sequence (CDS) from alignment at scaffold_17:658693..660087- >mRNA_6995 ID=mRNA_6995|Name=jgi.p|Nanoce1779_2|119238|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_17:658693..660087- (Nannochloropsis oceanica)
ATGTCCTTCAGTCACGGAACGAGCGACGAGCGTGAGCGACTCGAAAGGCG
ACGTGTATACGAAATGCAGCCGCTGCGCTCAGAACCCACGACCAAAACGC
CCACGGACTCACCATCCTATTATCTGGTTCCCATAACCACAGGATCAAAG
GGAATCTCTTCCTGCCATTGGGCACTGGTGCCGGTGTATGTGCATTGCCT
TTGCTTAGCACTGTCCTGGAAAGACCCCCCGAAAATCACAACCATAAAAC
CCAGGCCGCTGCAAGCAGCAAAAGAGCGGAGGTTCTCCTTACAAAAACAG
CCTCAAGCATCAGCAGTAGCAATGCCACGAGGCAGCACCGTACCATCCCT
CTCCTCCTCCTCCTCCTCCTCCTTTTCCGGCGTGTCGGTCCTGGGCCTGT
TCGTTCTAAGTGTCACCCTTACGAGCATCGTTACACAAGCCTTTATCCTG
CCCCTTCCTTCTTCCGCCCTCCCTCGACGGGCGCCGGCAGGCACTTTTTC
CGGTCTGACGCGCTCCGCCCGCGGAAGCGGAAGCGGGGGCGGCAGTCCGG
GACCACGTCCGTCCTTTCGAGACATCGAAGAGGAGGAATACGAGGGCGAG
GAGGAGGAGGAGGAAAAGGAGTATGACGACGACGATGAGGTCGCCCGGAT
GTACGTTTTGCGGGTGTTTCTCGTGACCAGGGAAGGAGGGGCAAGAGGTC
GGGGATGTGATGCTTATTTTCTCCAGACCATTCTCTCACTCTCTTGGGCT
TGTCTCTCGTTCCACCCACAGCCATCATCATCACAAACACATATGAGAGA
GGGCTCTAATAGGATACACTTACCCCAGGATGACCGTCGACTCAACTCCC
CCTCCCTCTCTCTCTCCCTTCTTTCCTTCCTCCCTACCCCTCCACTCTTT
CAGCGTGGGCGTCGGTCGCGAAGGCCGCCCCGTGCGCCGCGGGAAGAACG
TGGTGTTGGAGTGGCTGCGTGA back to top
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