jgi.p|Nanoce1779_2|672394, mRNA_6994 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|672394
Unique Name	mRNA_6994
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1051
Alignment location	scaffold_17:655436..656976 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	672480
Track	FilteredModels2
ProteinId	672394

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:655436..656976 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672394	gene_6994	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|672394	mRNA_6994-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6994	CDS_6994	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:655436..656976+
coding sequence from alignment at scaffold_17:655436..656976+

mRNA sequence

>mRNA_6994 ID=mRNA_6994|Name=jgi.p|Nanoce1779_2|672394|organism=Nannochloropsis oceanica|type=mRNA|length=1051bp
AGGGGAAGGAGAACGAGAGCAGCATCAGGCCACAGCCATGGCAGCGCGGA
TTTATGTTGGCAATCTGCCCATGGACATCCGGGAACGGGACGTGGAGGAG
ATGTTCGCCCGGTATGGCCGTGTGACAGGCGTTGACCTCAAGACGCCAGC
ACGCCCCCCTGCCTATGCTTTTGTGACATTTGACGACTGGCGGGATGCCG
AGGACGCGGTGCGGGCAAAAGACAATTATCAGATGCAAGAAGGAGGGAGG
CTGAGGGTTGAGATGGCGAAAGGGGCAGGGGGGGACATCGGGGGACTAAG
GGGAGGAGGAGGAGGAGGAGGAGGAGGGAGATTTGGACGAGAAGGAGGAG
GGTGGGAGGGGGGGAGGGGGGGAGGCTTTGGTAATGGATTTGACGGAGGG
AGGGATGGAGGGAGGGATGGGGGGAGGAACGGGGGGTTTGGACGAGAAGG
GGGAGGATATGAGGGAGGGAGGGGCGGAGGTTATGATGGAGGAAGGGGTG
GTGGATTTGGAGGGGGAGGAGGGGGAGGGATGCGTCCGCCGTTTTTCGGA
GGAGGAAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAAGAGAAC
GGAATACGGGTTGATTGTGACGGGATTGCCGCCGTCGGCGTCGTGGCAAG
ACTTGAAGGATCACATGAGGGGCGCTGGGGGGGACGTGTGCTTCAGTGAT
GTGGATAGGAAAGGAGGGGGGCTGGTGGAGTTTACGAGTGAGGAGGACAT
GCTGCGGAGTCTGGAACGGTTGGACAAGAGTGAGTTTTCGAACCGCTTCG
AGTCGAGCGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGGGAAGGCA
GGCGTAGCCGCAGTCGTAGCCGCAGTCCTCCTCGCTCCCGCCCTCGCTCC
CGCCCTCGCTCCCGCCCTGGGTCTCGGTCAGGCTCTCCGCCTCCTTCCTC
TCAGCCGCCACCTGGACGAGGTGGAGGGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGAGAGCGGGGGAGGAGGGGGAGCAGGTCACAGTCTCCCGTG
A

protein sequence of jgi.p|Nanoce1779_2|672394

>mRNA_6994-protein ID=mRNA_6994-protein|Name=jgi.p|Nanoce1779_2|672394|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MAARIYVGNLPMDIRERDVEEMFARYGRVTGVDLKTPARPPAYAFVTFDD
WRDAEDAVRAKDNYQMQEGGRLRVEMAKGAGGDIGGLRGGGGGGGGGRFG
REGGGWEGGRGGGFGNGFDGGRDGGRDGGRNGGFGREGGGYEGGRGGGYD
GGRGGGFGGGGGGGMRPPFFGGGRGGGREGGRGGGKRTEYGLIVTGLPPS
ASWQDLKDHMRGAGGDVCFSDVDRKGGGLVEFTSEEDMLRSLERLDKSEF
SNRFESSEEEEEEEEEEGGKAGVAAVVAAVLLAPALAPALAPALGLGQAL
RLLPLSRHLDEVEGEGGREGGREGESGGGGGAGHSLP*

mRNA from alignment at scaffold_17:655436..656976+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6994 ID=mRNA_6994|Name=jgi.p|Nanoce1779_2|672394|organism=Nannochloropsis oceanica|type=mRNA|length=1541bp|location=Sequence derived from alignment at scaffold_17:655436..656976+ (Nannochloropsis oceanica)
AGGGGAAGGAGAACGAGAGCAGCATCAGGCCACAGCCATGGCAGCGCGGA
TTTATGTTGGCAATCTGCCCATGGACATCCGGGAACGGGACGTGGAGGAG
ATGTTCGCCCGGTATGGCCGTGTGACAGGCGTTGACCTCAAGACGCCAGC
ACGGTAAGGAGCGAGGAAGGGAAGGAGGGAGGAAGGGAGGGCAGGGAGGA
ACGTGATAATATATTGGGAGAGCAGGTGGAAAAGCGAGTGAGAAGGGAAA
CGGGTTTGGAGGCATGCGCGTCAGGAAAAGTGAGTTCTGTCTCGTCTCGT
TCCTCGTCCCACTCTTTGAGCTTTCACTTATCGTCTCCTCCTCTCCTTAC
CCTCCCCTCCCTAAATCCCCCCTCTTTTATAGCCCCCCTGCCTATGCTTT
TGTGACATTTGACGACTGGCGGGATGCCGAGGACGCGGTGCGGGCAAAAG
ACAATTATCAGATGCAAGAAGGAGGGAGGCTGAGGGTTGAGATGGCGAAA
GGGGCAGGGGGGGACATCGGGGGACTAAGGGGAGGAGGAGGAGGAGGAGG
AGGAGGGAGATTTGGACGAGAAGGAGGAGGGTGGGAGGGGGGGAGGGGGG
GAGGCTTTGGTAATGGATTTGACGGAGGGAGGGATGGAGGGAGGGATGGG
GGGAGGAACGGGGGGTTTGGACGAGAAGGGGGAGGATATGAGGGAGGGAG
GGGCGGAGGTTATGATGGAGGAAGGGGTGGTGGATTTGGAGGGGGAGGAG
GGGGAGGGATGCGTCCGCCGTTTTTCGGAGGAGGAAGGGGGGGAGGGAGG
GAGGGAGGAAGGGGGGGAGGGAAGAGAACGGAATACGGGTTGATTGTGAC
GGGATTGCCGCCGTCGGCGTCGTGGCAAGACTTGAAGGATCACATGAGGG
GCGCTGGGGGGGACGTGTGCTTCAGTGATGTGGATAGGAAAGGAGGGGGG
CTGGTGGAGTTTACGAGTGAGGAGGACATGCTGCGGAGTCTGGAACGGTT
GGACAAGAGGTGAGGGACAAGGCAGGAAAGGGGGGAGGGAGGGAGGGAGG
GAGGGAGGGGAGGAGGGACGTGTGGTGTAGACGAAGAGGGAGGAGGTTCA
CGAGGGAGGGAGCTAAGGAAGAAGGAGGGAGGGAAGGAGCACGTGGGGTA
TTCTTCGGTTCACTGATATTAATGCGTTCCCTCCTCCATCCCTCCCTTCC
TTCCTCCCTTTCTTGTGCCTTTCTCAGTGAGTTTTCGAACCGCTTCGAGT
CGAGCGAGGTACGTGTGCGGCTTCCCAGGGACTCGCGTTTCGCCCGTGGA
GGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGGGAAGGCAGGCGTAGCCG
CAGTCGTAGCCGCAGTCCTCCTCGCTCCCGCCCTCGCTCCCGCCCTCGCT
CCCGCCCTGGGTCTCGGTCAGGCTCTCCGCCTCCTTCCTCTCAGCCGCCA
CCTGGACGAGGTGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
AGAGCGGGGGAGGAGGGGGAGCAGGTCACAGTCTCCCGTGA

Coding sequence (CDS) from alignment at scaffold_17:655436..656976+

>mRNA_6994 ID=mRNA_6994|Name=jgi.p|Nanoce1779_2|672394|organism=Nannochloropsis oceanica|type=CDS|length=4056bp|location=Sequence derived from alignment at scaffold_17:655436..656976+ (Nannochloropsis oceanica)
ATGGCAGCGCGGATTTATGTTGGCAATCTGCCCATGGACATCCGGGAACG
GGACGTGGAGGAGATGTTCGCCCGGTATGGCCGTGTGACAGGCGTTGACC
TCAAGACGCCAGCACGCCCCCCTGCCTATGCTTTTGTGACATTTGACGAC
TGGCGGGATGCCGAGGACGCGGTGCGGGCAAAAGACAATTATCAGATGCA
AGAAGGAGGGAGGCTGAGGGTTGAGATGGCGAAAGGGGCAGGGGGGGACA
TCGGGGGACTAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGGAGATTTGGA
CGAGAAGGAGGAGGGTGGGAGGGGGGGAGGGGGGGAGGCTTTGGTAATGG
ATTTGACGGAGGGAGGGATGGAGGGAGGGATGGGGGGAGGAACGGGGGGT
TTGGACGAGAAGGGGGAGGATATGAGGGAGGGAGGGGCGGAGGTTATGAT
GGAGGAAGGGGTGGTGGATTTGGAGGGGGAGGAGGGGGAGGGATGCGTCC
GCCGTTTTTCGGAGGAGGAAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGG
GAGGGAAGAGAACGGAATACGGGTTGATTGTGACGGGATTGCCGCCGTCG
GCGTCGTGGCAAGACTTGAAGGATCACATGAGGGGCGCTGGGGGGGACGT
GTGCTTCAGTGATGTGGATAGGAAAGGAGGGGGGCTGGTGGAGTTTACGA
GTGAGGAGGACATGCTGCGGAGTCTGGAACGGTTGGACAAGAGTGAGTTT
TCGAACCGCTTCGAGTCGAGCGAGGAGGAGGAGGAGGAGGAAGAGGAGGA
GGGGGGGAAGGCAGGCGTAGCCGCAGTCGTAGCCGCAGTCCTCCTCGCTC
CCGCCCTCGCTCCCGCCCTCGCTCCCGCCCTGGGTCTCGGTCAGGCTCTC
CGCCTCCTTCCTCTCAGCCGCCACCTGGACGAGGTGGAGGGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGAGAGCGGGGGAGGAGGGGGAGCAGGTC
ACAGTCTCCCGTGAATGGCAGCGCGGATTTATGTTGGCAATCTGCCCATG
GACATCCGGGAACGGGACGTGGAGGAGATGTTCGCCCGGTATGGCCGTGT
GACAGGCGTTGACCTCAAGACGCCAGCACGCCCCCCTGCCTATGCTTTTG
TGACATTTGACGACTGGCGGGATGCCGAGGACGCGGTGCGGGCAAAAGAC
AATTATCAGATGCAAGAAGGAGGGAGGCTGAGGGTTGAGATGGCGAAAGG
GGCAGGGGGGGACATCGGGGGACTAAGGGGAGGAGGAGGAGGAGGAGGAG
GAGGGAGATTTGGACGAGAAGGAGGAGGGTGGGAGGGGGGGAGGGGGGGA
GGCTTTGGTAATGGATTTGACGGAGGGAGGGATGGAGGGAGGGATGGGGG
GAGGAACGGGGGGTTTGGACGAGAAGGGGGAGGATATGAGGGAGGGAGGG
GCGGAGGTTATGATGGAGGAAGGGGTGGTGGATTTGGAGGGGGAGGAGGG
GGAGGGATGCGTCCGCCGTTTTTCGGAGGAGGAAGGGGGGGAGGGAGGGA
GGGAGGAAGGGGGGGAGGGAAGAGAACGGAATACGGGTTGATTGTGACGG
GATTGCCGCCGTCGGCGTCGTGGCAAGACTTGAAGGATCACATGAGGGGC
GCTGGGGGGGACGTGTGCTTCAGTGATGTGGATAGGAAAGGAGGGGGGCT
GGTGGAGTTTACGAGTGAGGAGGACATGCTGCGGAGTCTGGAACGGTTGG
ACAAGAGTGAGTTTTCGAACCGCTTCGAGTCGAGCGAGGAGGAGGAGGAG
GAGGAAGAGGAGGAGGGGGGGAAGGCAGGCGTAGCCGCAGTCGTAGCCGC
AGTCCTCCTCGCTCCCGCCCTCGCTCCCGCCCTCGCTCCCGCCCTGGGTC
TCGGTCAGGCTCTCCGCCTCCTTCCTCTCAGCCGCCACCTGGACGAGGTG
GAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGCGGGGGAGG
AGGGGGAGCAGGTCACAGTCTCCCGTGAATGGCAGCGCGGATTTATGTTG
GCAATCTGCCCATGGACATCCGGGAACGGGACGTGGAGGAGATGTTCGCC
CGGTATGGCCGTGTGACAGGCGTTGACCTCAAGACGCCAGCACGCCCCCC
TGCCTATGCTTTTGTGACATTTGACGACTGGCGGGATGCCGAGGACGCGG
TGCGGGCAAAAGACAATTATCAGATGCAAGAAGGAGGGAGGCTGAGGGTT
GAGATGGCGAAAGGGGCAGGGGGGGACATCGGGGGACTAAGGGGAGGAGG
AGGAGGAGGAGGAGGAGGGAGATTTGGACGAGAAGGAGGAGGGTGGGAGG
GGGGGAGGGGGGGAGGCTTTGGTAATGGATTTGACGGAGGGAGGGATGGA
GGGAGGGATGGGGGGAGGAACGGGGGGTTTGGACGAGAAGGGGGAGGATA
TGAGGGAGGGAGGGGCGGAGGTTATGATGGAGGAAGGGGTGGTGGATTTG
GAGGGGGAGGAGGGGGAGGGATGCGTCCGCCGTTTTTCGGAGGAGGAAGG
GGGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAAGAGAACGGAATACGG
GTTGATTGTGACGGGATTGCCGCCGTCGGCGTCGTGGCAAGACTTGAAGG
ATCACATGAGGGGCGCTGGGGGGGACGTGTGCTTCAGTGATGTGGATAGG
AAAGGAGGGGGGCTGGTGGAGTTTACGAGTGAGGAGGACATGCTGCGGAG
TCTGGAACGGTTGGACAAGAGTGAGTTTTCGAACCGCTTCGAGTCGAGCG
AGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGGGAAGGCAGGCGTAGCC
GCAGTCGTAGCCGCAGTCCTCCTCGCTCCCGCCCTCGCTCCCGCCCTCGC
TCCCGCCCTGGGTCTCGGTCAGGCTCTCCGCCTCCTTCCTCTCAGCCGCC
ACCTGGACGAGGTGGAGGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GAGAGCGGGGGAGGAGGGGGAGCAGGTCACAGTCTCCCGTGAATGGCAGC
GCGGATTTATGTTGGCAATCTGCCCATGGACATCCGGGAACGGGACGTGG
AGGAGATGTTCGCCCGGTATGGCCGTGTGACAGGCGTTGACCTCAAGACG
CCAGCACGCCCCCCTGCCTATGCTTTTGTGACATTTGACGACTGGCGGGA
TGCCGAGGACGCGGTGCGGGCAAAAGACAATTATCAGATGCAAGAAGGAG
GGAGGCTGAGGGTTGAGATGGCGAAAGGGGCAGGGGGGGACATCGGGGGA
CTAAGGGGAGGAGGAGGAGGAGGAGGAGGAGGGAGATTTGGACGAGAAGG
AGGAGGGTGGGAGGGGGGGAGGGGGGGAGGCTTTGGTAATGGATTTGACG
GAGGGAGGGATGGAGGGAGGGATGGGGGGAGGAACGGGGGGTTTGGACGA
GAAGGGGGAGGATATGAGGGAGGGAGGGGCGGAGGTTATGATGGAGGAAG
GGGTGGTGGATTTGGAGGGGGAGGAGGGGGAGGGATGCGTCCGCCGTTTT
TCGGAGGAGGAAGGGGGGGAGGGAGGGAGGGAGGAAGGGGGGGAGGGAAG
AGAACGGAATACGGGTTGATTGTGACGGGATTGCCGCCGTCGGCGTCGTG
GCAAGACTTGAAGGATCACATGAGGGGCGCTGGGGGGGACGTGTGCTTCA
GTGATGTGGATAGGAAAGGAGGGGGGCTGGTGGAGTTTACGAGTGAGGAG
GACATGCTGCGGAGTCTGGAACGGTTGGACAAGAGTGAGTTTTCGAACCG
CTTCGAGTCGAGCGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGGGGGGA
AGGCAGGCGTAGCCGCAGTCGTAGCCGCAGTCCTCCTCGCTCCCGCCCTC
GCTCCCGCCCTCGCTCCCGCCCTGGGTCTCGGTCAGGCTCTCCGCCTCCT
TCCTCTCAGCCGCCACCTGGACGAGGTGGAGGGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGAGAGCGGGGGAGGAGGGGGAGCAGGTCACAGTCTC
CCGTGA

Synonyms

Publications