jgi.p|Nanoce1779_2|573832, mRNA_699 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573832
Unique Name	mRNA_699
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1747
Alignment location	scaffold_2:220363..222109 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573918
Track	FilteredModels2
ProteinId	573832

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:220363..222109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573832	gene_699	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573832	mRNA_699-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_699	CDS_699	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:220363..222109+
coding sequence from alignment at scaffold_2:220363..222109+

mRNA sequence

>mRNA_699 ID=mRNA_699|Name=jgi.p|Nanoce1779_2|573832|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp
AGACACGAGATCACCATGCCGCGCGCACTCCTCCATAAGGTGGAGGACAA
GTATTTGCGGGGCACGGCTAGTCATTCAGTGGAAGAAACCATGAGGGAAG
CGCTCGTGGCAGACAACATTTTGCCTGCGCCGCAGCGCAAGAATTTTATG
AAGCTGTTTGGCAAGTTTTTGGAGTTCCGATCACGCCCACCCATTGATTG
GACGCAAGTCGAGCCTGTGGAGCCCACAAAGTTGATGGACTGGGAAGCAT
TGCCTGAATGCCCGGAAGACCAGGCAGTGCGGCACGAGCTTTTGGACAAG
CTGGTCATCCTCAAGTTGAACGGTGGCTTGGGTACCACAATGGGGTGCAC
CTTGCCTAAGTCAGCGATTGAAGTGCGACAAGAGATGACATTTTTAGACA
TGACGGTGCGACAAGTAGAATATTTGAATTCATTGTACGGGGTTGATGTA
CCGTTGCTACTTATGAACTCGTTCAAGACTGATGCCGTCACCTTACGGCT
CCTTAACAAGTACCGGCAGCACAACCTGACCATTCACACCTTTATGCAGT
CCTGCTTTCCCCGCATTGTCAAGGACACTTTGCAACCGTTGCCCCAAGGG
CCATTTAACGAAGAAAATGAGGCAGATTGGTATCCACCAGGGCACGGGGA
TCTGTACCAAAGCCTCTTCCAATCAGGCTTGTTGGATAATCTGATTGAGC
AGGGGAAAGAGTACATGTTTATCAGCAACGTAGACAACCTGGGAGCAACG
GTTGATTTGAATTTGCTCTATTACATTGTTGATAACGATATCGAATTCTG
CACGGGCGTTGTGGACCTGACCCGGGCTGATCAGGACGGAGGGGTGCTAA
CTGCCTACAAAGGCAAGCGCTTGGTGGTGGAGCTTTCCCAACTGCCCAAG
CAGCATTTGGAAACGGTGGCCAAAAAATTCACGGCCTTCCATACCAACAA
CGTATGGATCAACCTCCGTGCCCTTCATGCCTTGCTTGTGGAAGAAAAGC
TCTCCATTGACCTGGTCACGCACGAGCGCGTTGTGGACCGCCTCAAAATT
CTCCAGCTCGAAACCACCATTGGCAGTGTCATTAAAGATTTCACGAAGGT
CCTCACAATGAAAGTTCCCCGCTCCCGCTACCTCCCAGTTAAGTCCACGT
CCGATCTCTTCCTTGTCCAATCTTCCCTCTACTCCGTGTCACGTGGAATG
CTATTGCCCAACCCGGGGCGGCCATACGCGAAAGATAAAGTGCCTATCAT
AAAACTGGGCGAGCAATTTGTGCATATCCAGGATTATCTCGAACGGATTC
CTCATGGCGTCCCCGATTTGGTGGCTCTGGAGCATTTGACAGTTGCGGGG
GATGTGGTTTTCGGGGCGAACGTCACGTTGAAAGGGACGGTCATTATTGT
GGCTAATGAGGGCTCGGTGATCATGATCCCGGATGGAACAGTATTGGAGG
ACAAGGTCGTTACGGGTAATTTGAGGATTTTAGACCATTGATCATATTCA
CTGAGTGGGGAGGGGAACACATATCAGAAGCATTAAAGTCACCGTATGTG
TCGTGTGTCTGCGTGAGGAAATGAGGGGCGCTTGATGCCATCGAGTGCTA
TTCTTTCATTTTACTGTTGTGTATCTGTGGCTATCGAATATATGCACATG
GGGAGCACAAGCATACATCTGGCTGGAAGGAAGGGAAATGAATTCGGTTT
CTTGTAAGGTACTTACAGCACATCCAATTTATCCATATTCACCATTT

protein sequence of jgi.p|Nanoce1779_2|573832

>mRNA_699-protein ID=mRNA_699-protein|Name=jgi.p|Nanoce1779_2|573832|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MPRALLHKVEDKYLRGTASHSVEETMREALVADNILPAPQRKNFMKLFGK
FLEFRSRPPIDWTQVEPVEPTKLMDWEALPECPEDQAVRHELLDKLVILK
LNGGLGTTMGCTLPKSAIEVRQEMTFLDMTVRQVEYLNSLYGVDVPLLLM
NSFKTDAVTLRLLNKYRQHNLTIHTFMQSCFPRIVKDTLQPLPQGPFNEE
NEADWYPPGHGDLYQSLFQSGLLDNLIEQGKEYMFISNVDNLGATVDLNL
LYYIVDNDIEFCTGVVDLTRADQDGGVLTAYKGKRLVVELSQLPKQHLET
VAKKFTAFHTNNVWINLRALHALLVEEKLSIDLVTHERVVDRLKILQLET
TIGSVIKDFTKVLTMKVPRSRYLPVKSTSDLFLVQSSLYSVSRGMLLPNP
GRPYAKDKVPIIKLGEQFVHIQDYLERIPHGVPDLVALEHLTVAGDVVFG
ANVTLKGTVIIVANEGSVIMIPDGTVLEDKVVTGNLRILDH*

mRNA from alignment at scaffold_2:220363..222109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_699 ID=mRNA_699|Name=jgi.p|Nanoce1779_2|573832|organism=Nannochloropsis oceanica|type=mRNA|length=1747bp|location=Sequence derived from alignment at scaffold_2:220363..222109+ (Nannochloropsis oceanica)
AGACACGAGATCACCATGCCGCGCGCACTCCTCCATAAGGTGGAGGACAA
GTATTTGCGGGGCACGGCTAGTCATTCAGTGGAAGAAACCATGAGGGAAG
CGCTCGTGGCAGACAACATTTTGCCTGCGCCGCAGCGCAAGAATTTTATG
AAGCTGTTTGGCAAGTTTTTGGAGTTCCGATCACGCCCACCCATTGATTG
GACGCAAGTCGAGCCTGTGGAGCCCACAAAGTTGATGGACTGGGAAGCAT
TGCCTGAATGCCCGGAAGACCAGGCAGTGCGGCACGAGCTTTTGGACAAG
CTGGTCATCCTCAAGTTGAACGGTGGCTTGGGTACCACAATGGGGTGCAC
CTTGCCTAAGTCAGCGATTGAAGTGCGACAAGAGATGACATTTTTAGACA
TGACGGTGCGACAAGTAGAATATTTGAATTCATTGTACGGGGTTGATGTA
CCGTTGCTACTTATGAACTCGTTCAAGACTGATGCCGTCACCTTACGGCT
CCTTAACAAGTACCGGCAGCACAACCTGACCATTCACACCTTTATGCAGT
CCTGCTTTCCCCGCATTGTCAAGGACACTTTGCAACCGTTGCCCCAAGGG
CCATTTAACGAAGAAAATGAGGCAGATTGGTATCCACCAGGGCACGGGGA
TCTGTACCAAAGCCTCTTCCAATCAGGCTTGTTGGATAATCTGATTGAGC
AGGGGAAAGAGTACATGTTTATCAGCAACGTAGACAACCTGGGAGCAACG
GTTGATTTGAATTTGCTCTATTACATTGTTGATAACGATATCGAATTCTG
CACGGGCGTTGTGGACCTGACCCGGGCTGATCAGGACGGAGGGGTGCTAA
CTGCCTACAAAGGCAAGCGCTTGGTGGTGGAGCTTTCCCAACTGCCCAAG
CAGCATTTGGAAACGGTGGCCAAAAAATTCACGGCCTTCCATACCAACAA
CGTATGGATCAACCTCCGTGCCCTTCATGCCTTGCTTGTGGAAGAAAAGC
TCTCCATTGACCTGGTCACGCACGAGCGCGTTGTGGACCGCCTCAAAATT
CTCCAGCTCGAAACCACCATTGGCAGTGTCATTAAAGATTTCACGAAGGT
CCTCACAATGAAAGTTCCCCGCTCCCGCTACCTCCCAGTTAAGTCCACGT
CCGATCTCTTCCTTGTCCAATCTTCCCTCTACTCCGTGTCACGTGGAATG
CTATTGCCCAACCCGGGGCGGCCATACGCGAAAGATAAAGTGCCTATCAT
AAAACTGGGCGAGCAATTTGTGCATATCCAGGATTATCTCGAACGGATTC
CTCATGGCGTCCCCGATTTGGTGGCTCTGGAGCATTTGACAGTTGCGGGG
GATGTGGTTTTCGGGGCGAACGTCACGTTGAAAGGGACGGTCATTATTGT
GGCTAATGAGGGCTCGGTGATCATGATCCCGGATGGAACAGTATTGGAGG
ACAAGGTCGTTACGGGTAATTTGAGGATTTTAGACCATTGATCATATTCA
CTGAGTGGGGAGGGGAACACATATCAGAAGCATTAAAGTCACCGTATGTG
TCGTGTGTCTGCGTGAGGAAATGAGGGGCGCTTGATGCCATCGAGTGCTA
TTCTTTCATTTTACTGTTGTGTATCTGTGGCTATCGAATATATGCACATG
GGGAGCACAAGCATACATCTGGCTGGAAGGAAGGGAAATGAATTCGGTTT
CTTGTAAGGTACTTACAGCACATCCAATTTATCCATATTCACCATTT

Coding sequence (CDS) from alignment at scaffold_2:220363..222109+

>mRNA_699 ID=mRNA_699|Name=jgi.p|Nanoce1779_2|573832|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_2:220363..222109+ (Nannochloropsis oceanica)
ATGCCGCGCGCACTCCTCCATAAGGTGGAGGACAAGTATTTGCGGGGCAC
GGCTAGTCATTCAGTGGAAGAAACCATGAGGGAAGCGCTCGTGGCAGACA
ACATTTTGCCTGCGCCGCAGCGCAAGAATTTTATGAAGCTGTTTGGCAAG
TTTTTGGAGTTCCGATCACGCCCACCCATTGATTGGACGCAAGTCGAGCC
TGTGGAGCCCACAAAGTTGATGGACTGGGAAGCATTGCCTGAATGCCCGG
AAGACCAGGCAGTGCGGCACGAGCTTTTGGACAAGCTGGTCATCCTCAAG
TTGAACGGTGGCTTGGGTACCACAATGGGGTGCACCTTGCCTAAGTCAGC
GATTGAAGTGCGACAAGAGATGACATTTTTAGACATGACGGTGCGACAAG
TAGAATATTTGAATTCATTGTACGGGGTTGATGTACCGTTGCTACTTATG
AACTCGTTCAAGACTGATGCCGTCACCTTACGGCTCCTTAACAAGTACCG
GCAGCACAACCTGACCATTCACACCTTTATGCAGTCCTGCTTTCCCCGCA
TTGTCAAGGACACTTTGCAACCGTTGCCCCAAGGGCCATTTAACGAAGAA
AATGAGGCAGATTGGTATCCACCAGGGCACGGGGATCTGTACCAAAGCCT
CTTCCAATCAGGCTTGTTGGATAATCTGATTGAGCAGGGGAAAGAGTACA
TGTTTATCAGCAACGTAGACAACCTGGGAGCAACGGTTGATTTGAATTTG
CTCTATTACATTGTTGATAACGATATCGAATTCTGCACGGGCGTTGTGGA
CCTGACCCGGGCTGATCAGGACGGAGGGGTGCTAACTGCCTACAAAGGCA
AGCGCTTGGTGGTGGAGCTTTCCCAACTGCCCAAGCAGCATTTGGAAACG
GTGGCCAAAAAATTCACGGCCTTCCATACCAACAACGTATGGATCAACCT
CCGTGCCCTTCATGCCTTGCTTGTGGAAGAAAAGCTCTCCATTGACCTGG
TCACGCACGAGCGCGTTGTGGACCGCCTCAAAATTCTCCAGCTCGAAACC
ACCATTGGCAGTGTCATTAAAGATTTCACGAAGGTCCTCACAATGAAAGT
TCCCCGCTCCCGCTACCTCCCAGTTAAGTCCACGTCCGATCTCTTCCTTG
TCCAATCTTCCCTCTACTCCGTGTCACGTGGAATGCTATTGCCCAACCCG
GGGCGGCCATACGCGAAAGATAAAGTGCCTATCATAAAACTGGGCGAGCA
ATTTGTGCATATCCAGGATTATCTCGAACGGATTCCTCATGGCGTCCCCG
ATTTGGTGGCTCTGGAGCATTTGACAGTTGCGGGGGATGTGGTTTTCGGG
GCGAACGTCACGTTGAAAGGGACGGTCATTATTGTGGCTAATGAGGGCTC
GGTGATCATGATCCCGGATGGAACAGTATTGGAGGACAAGGTCGTTACGG
GTAATTTGAGGATTTTAGACCATTGA

Synonyms

Publications