jgi.p|Nanoce1779_2|567535, mRNA_6987 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|567535
Unique NamemRNA_6987
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length375
Alignment locationscaffold_17:626725..627341 -

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Properties
Property NameValue
TranscriptId567621
TrackFilteredModels2
ProteinId567535
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:626725..627341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567535gene_6987Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567535mRNA_6987-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6987CDS_6987Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6987 ID=mRNA_6987|Name=jgi.p|Nanoce1779_2|567535|organism=Nannochloropsis oceanica|type=mRNA|length=375bp
ATGCGGGAGTGCTGGGAGGGCGAGGTGGTCATTCCTGGCACTAGCCCCGC
CATTTTTCTCCTCCTCCTCGAATATCTGTACACAGATCTTGTCCCTCTTG
AAAACATGCGCCCGGAGACGGCCATCGAGCTCTTCATCGCGGCGGACCTC
TATGGTGTCGAGCGTCTGAAACACTATTGTGAAGAGGTCCTGCAAAAGAA
GCTGTCGATCGACAATGCCGCCTCCACGCTGCAGACCGCAGACGACTTGA
ACGCCATAGCCCTCAAGGACGTTTGCACTGCCTTCATTGTTCGCCATTTC
GACGAGGCCACCAGAACCGAGGGATTCGCATCCCTCTCCCGCGAGCTCAT
CTTAGAAGTGCTTCAGAGCAGATAG
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protein sequence of jgi.p|Nanoce1779_2|567535

>mRNA_6987-protein ID=mRNA_6987-protein|Name=jgi.p|Nanoce1779_2|567535|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MRECWEGEVVIPGTSPAIFLLLLEYLYTDLVPLENMRPETAIELFIAADL
YGVERLKHYCEEVLQKKLSIDNAASTLQTADDLNAIALKDVCTAFIVRHF
DEATRTEGFASLSRELILEVLQSR*
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mRNA from alignment at scaffold_17:626725..627341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6987 ID=mRNA_6987|Name=jgi.p|Nanoce1779_2|567535|organism=Nannochloropsis oceanica|type=mRNA|length=617bp|location=Sequence derived from alignment at scaffold_17:626725..627341- (Nannochloropsis oceanica)
ATGCGGGAGTGCTGGGAGGGCGAGGTGGTCATTCCTGGCACTAGCCCCGC
CATTTTTCTCCTCCTCCTCGAATATCTGTACACAGATCTTGTCCCTCTTG
AAAACATGCGCCCGGAGACGGTACGTGCGCCCTCCCTCCCTCCCTTCCTC
CTTCCCTTACCCCCTCCGTTCGTTGCCCGGGACGTACCGCGCTCTGTGAG
TCGCCACCCAGCGATTCACACTCCTCCATCCCTCCCTCCCTCAAGGCCAT
CGAGCTCTTCATCGCGGCGGACCTCTATGGTGTCGAGCGTCTGAAACACT
ATTGTGAAGAGGTCCTGCAAAAGAAGCTGTCGATCGACAATGCCGCCTCC
ACGCTGCAGACCGCAGACGACTTGAAGTACGGGCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCTTGAGAGACGTGGGGCAGAGTGCCCTTGC
TCACCCTCCCTCCCTCCCTTCCCTCCCTCCCTACCTCCCTCAGCGCCATA
GCCCTCAAGGACGTTTGCACTGCCTTCATTGTTCGCCATTTCGACGAGGC
CACCAGAACCGAGGGATTCGCATCCCTCTCCCGCGAGCTCATCTTAGAAG
TGCTTCAGAGCAGATAG
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Coding sequence (CDS) from alignment at scaffold_17:626725..627341-

>mRNA_6987 ID=mRNA_6987|Name=jgi.p|Nanoce1779_2|567535|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_17:626725..627341- (Nannochloropsis oceanica)
CGCCATAGCCCTCAAGGACGTTTGCACTGCCTTCATTGTTCGCCATTTCG
ACGAGGCCACCAGAACCGAGGGATTCGCATCCCTCTCCCGCGAGCTCATC
TTAGAAGTGCTTCAGAGCAGATAGGCCATCGAGCTCTTCATCGCGGCGGA
CCTCTATGGTGTCGAGCGTCTGAAACACTATTGTGAAGAGGTCCTGCAAA
AGAAGCTGTCGATCGACAATGCCGCCTCCACGCTGCAGACCGCAGACGAC
TTGAAATGCGGGAGTGCTGGGAGGGCGAGGTGGTCATTCCTGGCACTAGC
CCCGCCATTTTTCTCCTCCTCCTCGAATATCTGTACACAGATCTTGTCCC
TCTTGAAAACATGCGCCCGGAGACGCGCCATAGCCCTCAAGGACGTTTGC
ACTGCCTTCATTGTTCGCCATTTCGACGAGGCCACCAGAACCGAGGGATT
CGCATCCCTCTCCCGCGAGCTCATCTTAGAAGTGCTTCAGAGCAGATAGG
CCATCGAGCTCTTCATCGCGGCGGACCTCTATGGTGTCGAGCGTCTGAAA
CACTATTGTGAAGAGGTCCTGCAAAAGAAGCTGTCGATCGACAATGCCGC
CTCCACGCTGCAGACCGCAGACGACTTGAAATGCGGGAGTGCTGGGAGGG
CGAGGTGGTCATTCCTGGCACTAGCCCCGCCATTTTTCTCCTCCTCCTCG
AATATCTGTACACAGATCTTGTCCCTCTTGAAAACATGCGCCCGGAGACG
CGCCATAGCCCTCAAGGACGTTTGCACTGCCTTCATTGTTCGCCATTTCG
ACGAGGCCACCAGAACCGAGGGATTCGCATCCCTCTCCCGCGAGCTCATC
TTAGAAGTGCTTCAGAGCAGATAGGCCATCGAGCTCTTCATCGCGGCGGA
CCTCTATGGTGTCGAGCGTCTGAAACACTATTGTGAAGAGGTCCTGCAAA
AGAAGCTGTCGATCGACAATGCCGCCTCCACGCTGCAGACCGCAGACGAC
TTGAAATGCGGGAGTGCTGGGAGGGCGAGGTGGTCATTCCTGGCACTAGC
CCCGCCATTTTTCTCCTCCTCCTCGAATATCTGTACACAGATCTTGTCCC
TCTTGAAAACATGCGCCCGGAGACG
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Synonyms
Publications