jgi.p|Nanoce1779_2|557969, mRNA_6986 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557969
Unique Name	mRNA_6986
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	592
Alignment location	scaffold_17:622272..623989 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	558055
Track	FilteredModels2
ProteinId	557969

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:622272..623989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557969	gene_6986	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557969	mRNA_6986-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6986	CDS_6986	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:622272..623989+
coding sequence from alignment at scaffold_17:622272..623989+

mRNA sequence

>mRNA_6986 ID=mRNA_6986|Name=jgi.p|Nanoce1779_2|557969|organism=Nannochloropsis oceanica|type=mRNA|length=592bp
GTGCAAAGCTTGCAGTCCGTGATGAAAGATTTTCGTTTCGCTTTGCAGTC
GTTCGATGTGTCTGCTCGGCGGCTGGAAGGGGTGGCGGAGCTCTTTCAGA
TGGCCCAGCGCTTGGTGGTGTTTCCGTTTTGGCCTCTTTTCGACATGGAC
AAGAACGATTTGACCGAGAAGCTCAAGCGCGTCCTTGACCGTATTTTCCG
CATCTTCGACGTGGATCACGACGGCCTCCTCAACGATAGGGAGCTCGACG
CCCTCCAACAGCATTGCTTTAAATCCCACCTGCAGGAGGAGGACCTGAAG
GGCGTGAAAAAGATGGTTCAAAAAGGATGCTCGGAAGGTGTTCGGGCCGA
TGCTCTCACCCTCAATGGCTTGTATGAAGTCATTAGACTCTTCCTCAACG
ACATGCAGGTGGACATGCCCTGGACGCTCTTACGGAGTCTCGGCTACGAC
GACGACCTGGAATTCGAGAGCAATCTTCCAGATTTAGAAGCCTGTGTTAT
GGGGGGTCCGGAAGACGCCTACCAGCTGGCCCCGGCCGGCCTGCGGAAGG
TCCTCAGTCTCTTCCGACAATACGCAACCCGCCCGCCCTCCC

protein sequence of jgi.p|Nanoce1779_2|557969

>mRNA_6986-protein ID=mRNA_6986-protein|Name=jgi.p|Nanoce1779_2|557969|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MKDFRFALQSFDVSARRLEGVAELFQMAQRLVVFPFWPLFDMDKNDLTEK
LKRVLDRIFRIFDVDHDGLLNDRELDALQQHCFKSHLQEEDLKGVKKMVQ
KGCSEGVRADALTLNGLYEVIRLFLNDMQVDMPWTLLRSLGYDDDLEFES
NLPDLEACVMGGPEDAYQLAPAGLRKVLSLFRQYATRPPS

mRNA from alignment at scaffold_17:622272..623989+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6986 ID=mRNA_6986|Name=jgi.p|Nanoce1779_2|557969|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp|location=Sequence derived from alignment at scaffold_17:622272..623989+ (Nannochloropsis oceanica)
GTGCAAAGCTTGCAGTCCGTGATGAAAGATTTTCGGTGAGCAAGCAGAGG
GGAGGGAGGGTGGGACGGAGGAATGGGAGGAGGGAGGGGGGAAGGGAGGA
AGGGAGGGAGGGCGTCGTCCATGCCACGAGAAAAAAGAAGAGAGCATTCC
AAAGTATAATGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTC
TCCCTCCCTCTCCCCCTCCAGTTTCGCTTTGCAGTCGTTCGATGTGTCTG
CTCGGCGGCTGGAAGGGGTGGCGGAGCTCTTTCAGATGGCCCAGCGCTTG
GTGGTGTTTCCGTTTTGGCCTCTTTTCGACATGGACAAGAACGATTTGAC
CGAGAAGGTAGGGAAGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGA
GGGAGGGGGGGGTCCCCGTGGCTGAGGGAATCAATCTACTGCTTCTTTTT
TAGTGCCCAACAGCCTAATCATTTTTGCATCCCCTTCCCTACCTCCCCCC
CCCCCTCTTCTTCCCATCCTCCCTCCCTCCCTCCCATTCCTCCAGCTCAA
GCGCGTCCTTGACCGTATTTTCCGCATCTTCGACGTGGATCACGACGGCC
TCCTCAACGATAGGGAGCTCGACGCCCTCCAACAGCATTGCTTTAAATCC
CACCTGCAGGTAGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCAGGCCCAAACTGCGCGCTCACCCTATTTCTGCCTCTTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCCCTAGGAGGAGGACCTGAAGGGCGTGAAAAAGATGGTTCAAAAAG
GATGCTCGGAAGGTGTTCGGGCCGATGCTCTCACCCTCAATGGCTTGTAT
GAAGTCATTAGACTCTTCCTCAACGACATGCAGGTATGCCCTTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTCCTTCTCCCCCTCCACTG
CACCAGTCAAACTCCCCCTCCCCTCCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTCTTCAGGTGGACATGCCCTGGACGCTCTTACGGAGTCTCGGCTA
CGACGACGACCTGGAATTCGAGGTCGGGAGGGAGGGAGGTCGGGAGGGAG
GGAGGGAGGGAAGGAGCCACAAGGGAGGAAGAGAGCGAGGGAGAGAGGGA
GAGATAACCACATGGCATACAAGTCACCTTTGCCGTTCTTTCCCTTTCCT
CCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTTCCTCTAGAGCAAT
CTTCCAGATTTAGAAGCCTGTGTTATGGGGGGTCCGGAAGACGCCTACCA
GCTGGCCCCGGCCGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGACCACCAAAGCGTAATGTAGGAGGCATATATTTTCTTGTAGAGGC
ATATATTATCTAATGGAGGCATATTTTATATTATGGGGGCATATATTATC
TGATAGGGGCATATATTATCTGATAGGGGCATGTATTATCTTATAGCGGA
ATTCATTCTCTCACGGAGGCACTCATTCATTAAACCCTCCGGCCTCCTGC
CCTCCCCCCACTAGGCCTGCGGAAGGTCCTCAGTCTCTTCCGACAATACG
CAACCCGCCCGCCCTCCC

Coding sequence (CDS) from alignment at scaffold_17:622272..623989+

>mRNA_6986 ID=mRNA_6986|Name=jgi.p|Nanoce1779_2|557969|organism=Nannochloropsis oceanica|type=CDS|length=3990bp|location=Sequence derived from alignment at scaffold_17:622272..623989+ (Nannochloropsis oceanica)
ATGAAAGATTTTCGTTTCGCTTTGCAGTCGTTCGATGTGTCTGCTCGGCG
GCTGGAAGGGGTGGCGGAGCTCTTTCAGATGGCCCAGCGCTTGGTGGTGT
TTCCGTTTTGGCCTCTTTTCGACATGGACAAGAACGATTTGACCGAGAAG
CTCAAGCGCGTCCTTGACCGTATTTTCCGCATCTTCGACGTGGATCACGA
CGGCCTCCTCAACGATAGGGAGCTCGACGCCCTCCAACAGCATTGCTTTA
AATCCCACCTGCAGGAGGAGGACCTGAAGGGCGTGAAAAAGATGGTTCAA
AAAGGATGCTCGGAAGGTGTTCGGGCCGATGCTCTCACCCTCAATGGCTT
GTATGAAGTCATTAGACTCTTCCTCAACGACATGCAGGTGGACATGCCCT
GGACGCTCTTACGGAGTCTCGGCTACGACGACGACCTGGAATTCGAGAGC
AATCTTCCAGATTTAGAAGCCTGTGTTATGGGGGGTCCGGAAGACGCCTA
CCAGCTGGCCCCGGCCGGCCTGCGGAAGGTCCTCAGTCTCTTCCGACAAT
ACGCAACCCGCCCGCCCTCCATGAAAGATTTTCGTTTCGCTTTGCAGTCG
TTCGATGTGTCTGCTCGGCGGCTGGAAGGGGTGGCGGAGCTCTTTCAGAT
GGCCCAGCGCTTGGTGGTGTTTCCGTTTTGGCCTCTTTTCGACATGGACA
AGAACGATTTGACCGAGAAGCTCAAGCGCGTCCTTGACCGTATTTTCCGC
ATCTTCGACGTGGATCACGACGGCCTCCTCAACGATAGGGAGCTCGACGC
CCTCCAACAGCATTGCTTTAAATCCCACCTGCAGGAGGAGGACCTGAAGG
GCGTGAAAAAGATGGTTCAAAAAGGATGCTCGGAAGGTGTTCGGGCCGAT
GCTCTCACCCTCAATGGCTTGTATGAAGTCATTAGACTCTTCCTCAACGA
CATGCAGGTGGACATGCCCTGGACGCTCTTACGGAGTCTCGGCTACGACG
ACGACCTGGAATTCGAGAGCAATCTTCCAGATTTAGAAGCCTGTGTTATG
GGGGGTCCGGAAGACGCCTACCAGCTGGCCCCGGCCGGCCTGCGGAAGGT
CCTCAGTCTCTTCCGACAATACGCAACCCGCCCGCCCTCCATGAAAGATT
TTCGTTTCGCTTTGCAGTCGTTCGATGTGTCTGCTCGGCGGCTGGAAGGG
GTGGCGGAGCTCTTTCAGATGGCCCAGCGCTTGGTGGTGTTTCCGTTTTG
GCCTCTTTTCGACATGGACAAGAACGATTTGACCGAGAAGCTCAAGCGCG
TCCTTGACCGTATTTTCCGCATCTTCGACGTGGATCACGACGGCCTCCTC
AACGATAGGGAGCTCGACGCCCTCCAACAGCATTGCTTTAAATCCCACCT
GCAGGAGGAGGACCTGAAGGGCGTGAAAAAGATGGTTCAAAAAGGATGCT
CGGAAGGTGTTCGGGCCGATGCTCTCACCCTCAATGGCTTGTATGAAGTC
ATTAGACTCTTCCTCAACGACATGCAGGTGGACATGCCCTGGACGCTCTT
ACGGAGTCTCGGCTACGACGACGACCTGGAATTCGAGAGCAATCTTCCAG
ATTTAGAAGCCTGTGTTATGGGGGGTCCGGAAGACGCCTACCAGCTGGCC
CCGGCCGGCCTGCGGAAGGTCCTCAGTCTCTTCCGACAATACGCAACCCG
CCCGCCCTCCATGAAAGATTTTCGTTTCGCTTTGCAGTCGTTCGATGTGT
CTGCTCGGCGGCTGGAAGGGGTGGCGGAGCTCTTTCAGATGGCCCAGCGC
TTGGTGGTGTTTCCGTTTTGGCCTCTTTTCGACATGGACAAGAACGATTT
GACCGAGAAGCTCAAGCGCGTCCTTGACCGTATTTTCCGCATCTTCGACG
TGGATCACGACGGCCTCCTCAACGATAGGGAGCTCGACGCCCTCCAACAG
CATTGCTTTAAATCCCACCTGCAGGAGGAGGACCTGAAGGGCGTGAAAAA
GATGGTTCAAAAAGGATGCTCGGAAGGTGTTCGGGCCGATGCTCTCACCC
TCAATGGCTTGTATGAAGTCATTAGACTCTTCCTCAACGACATGCAGGTG
GACATGCCCTGGACGCTCTTACGGAGTCTCGGCTACGACGACGACCTGGA
ATTCGAGAGCAATCTTCCAGATTTAGAAGCCTGTGTTATGGGGGGTCCGG
AAGACGCCTACCAGCTGGCCCCGGCCGGCCTGCGGAAGGTCCTCAGTCTC
TTCCGACAATACGCAACCCGCCCGCCCTCCATGAAAGATTTTCGTTTCGC
TTTGCAGTCGTTCGATGTGTCTGCTCGGCGGCTGGAAGGGGTGGCGGAGC
TCTTTCAGATGGCCCAGCGCTTGGTGGTGTTTCCGTTTTGGCCTCTTTTC
GACATGGACAAGAACGATTTGACCGAGAAGCTCAAGCGCGTCCTTGACCG
TATTTTCCGCATCTTCGACGTGGATCACGACGGCCTCCTCAACGATAGGG
AGCTCGACGCCCTCCAACAGCATTGCTTTAAATCCCACCTGCAGGAGGAG
GACCTGAAGGGCGTGAAAAAGATGGTTCAAAAAGGATGCTCGGAAGGTGT
TCGGGCCGATGCTCTCACCCTCAATGGCTTGTATGAAGTCATTAGACTCT
TCCTCAACGACATGCAGGTGGACATGCCCTGGACGCTCTTACGGAGTCTC
GGCTACGACGACGACCTGGAATTCGAGAGCAATCTTCCAGATTTAGAAGC
CTGTGTTATGGGGGGTCCGGAAGACGCCTACCAGCTGGCCCCGGCCGGCC
TGCGGAAGGTCCTCAGTCTCTTCCGACAATACGCAACCCGCCCGCCCTCC
ATGAAAGATTTTCGTTTCGCTTTGCAGTCGTTCGATGTGTCTGCTCGGCG
GCTGGAAGGGGTGGCGGAGCTCTTTCAGATGGCCCAGCGCTTGGTGGTGT
TTCCGTTTTGGCCTCTTTTCGACATGGACAAGAACGATTTGACCGAGAAG
CTCAAGCGCGTCCTTGACCGTATTTTCCGCATCTTCGACGTGGATCACGA
CGGCCTCCTCAACGATAGGGAGCTCGACGCCCTCCAACAGCATTGCTTTA
AATCCCACCTGCAGGAGGAGGACCTGAAGGGCGTGAAAAAGATGGTTCAA
AAAGGATGCTCGGAAGGTGTTCGGGCCGATGCTCTCACCCTCAATGGCTT
GTATGAAGTCATTAGACTCTTCCTCAACGACATGCAGGTGGACATGCCCT
GGACGCTCTTACGGAGTCTCGGCTACGACGACGACCTGGAATTCGAGAGC
AATCTTCCAGATTTAGAAGCCTGTGTTATGGGGGGTCCGGAAGACGCCTA
CCAGCTGGCCCCGGCCGGCCTGCGGAAGGTCCTCAGTCTCTTCCGACAAT
ACGCAACCCGCCCGCCCTCCATGAAAGATTTTCGTTTCGCTTTGCAGTCG
TTCGATGTGTCTGCTCGGCGGCTGGAAGGGGTGGCGGAGCTCTTTCAGAT
GGCCCAGCGCTTGGTGGTGTTTCCGTTTTGGCCTCTTTTCGACATGGACA
AGAACGATTTGACCGAGAAGCTCAAGCGCGTCCTTGACCGTATTTTCCGC
ATCTTCGACGTGGATCACGACGGCCTCCTCAACGATAGGGAGCTCGACGC
CCTCCAACAGCATTGCTTTAAATCCCACCTGCAGGAGGAGGACCTGAAGG
GCGTGAAAAAGATGGTTCAAAAAGGATGCTCGGAAGGTGTTCGGGCCGAT
GCTCTCACCCTCAATGGCTTGTATGAAGTCATTAGACTCTTCCTCAACGA
CATGCAGGTGGACATGCCCTGGACGCTCTTACGGAGTCTCGGCTACGACG
ACGACCTGGAATTCGAGAGCAATCTTCCAGATTTAGAAGCCTGTGTTATG
GGGGGTCCGGAAGACGCCTACCAGCTGGCCCCGGCCGGCCTGCGGAAGGT
CCTCAGTCTCTTCCGACAATACGCAACCCGCCCGCCCTCC

Synonyms

Publications