jgi.p|Nanoce1779_2|597054, mRNA_6984 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597054
Unique NamemRNA_6984
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length975
Alignment locationscaffold_17:619370..620344 +

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Properties
Property NameValue
TranscriptId597140
TrackFilteredModels2
ProteinId597054
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:619370..620344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597054gene_6984Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597054mRNA_6984-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6984CDS_6984Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6984 ID=mRNA_6984|Name=jgi.p|Nanoce1779_2|597054|organism=Nannochloropsis oceanica|type=mRNA|length=975bp
TCTCCCTCGCCTTCCCCTCCTCCTCCTTTCCCTTCTTTTCCTTCTATTCC
AAGCACCCGTATTCTCACTGCCTTCTTCACCTCCTCCTTCAAGGCCTCCT
CCTCCTCAGGCACCGCCAGGAGGGAGGAGTAGAAAAAACGGACGTCGCCC
GTCCCGACGCTCTGAGTACCCGTGGATACGGTGACGAGCACACGCCGTGG
ATGCCCCCCCCCGCTCCTGCAGCGTTTTGGTCCCTGTAATAGTCGTACGG
TTCAAAGTGTCGGACACATTAAAGGGAGGAGGGTCCGCGGTGAGTAGAAA
GGGGAGGGAAGGCAAGGGAGATGGGGATGCCGTTGGCCCGTCCCCTCTTA
TTCTTCGTCCTGGCTCTCCGACGTCTGAGGGCATTCGTTGTTGTTGACGT
TCTTCATGTTGTTGATGTTGTTGACGTTGTTGATGCTGCTGCTGCTGCCG
TCCTTCCAGTTTGGACATGGCCTCCTTGGCCCGGCCTTGCGCGATGAGGG
TTTCCATGGGCGTGGCTATCCGCTTGAGGACATGGATGAGCTCGATCCTA
TAGAGGAGGAGGGAGGAAAATGGAGATGCAGGGATGTGGGAGGGGGTATG
AGGGAAGGAAAAGCCACCACCGGCATAGAGAAGACAGAGATGGATTAGAA
AGAGATGCAGCTCTCCATACGGGGACGCAGCGCAAGGGATTACCCGGGTG
GCTTGACTAAACGCGACCTGCACTTTAAGGGCGCTTCCTCTGCGAGGATT
TCATAAATGGCTTGTGCCGATGGAGCTCGACACTTGACCGTGCATAGCAT
GACGTCCGCACACATAAAATCATGGAAGCTTTTGACCTCCCTCCCCTCCC
TCCCTCACTCCCTTCTCCCTGTACTCACTCTTGTTTGGCTGTCAGCGCCA
ATGTTTCGAAGAGCCGCAAGAAAAGGGGGTCATCGAGGTCGTATGTTAGG
ACACGGAGGTAGGCCATGACCCTGT
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protein sequence of jgi.p|Nanoce1779_2|597054

>mRNA_6984-protein ID=mRNA_6984-protein|Name=jgi.p|Nanoce1779_2|597054|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MLLMLLTLLMLLLLPSFQFGHGLLGPALRDEGFHGRGYPLEDMDELDPIE
EEGGKWRCRDVGGGMREGKATTGIEKTEMD*
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mRNA from alignment at scaffold_17:619370..620344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6984 ID=mRNA_6984|Name=jgi.p|Nanoce1779_2|597054|organism=Nannochloropsis oceanica|type=mRNA|length=975bp|location=Sequence derived from alignment at scaffold_17:619370..620344+ (Nannochloropsis oceanica)
TCTCCCTCGCCTTCCCCTCCTCCTCCTTTCCCTTCTTTTCCTTCTATTCC
AAGCACCCGTATTCTCACTGCCTTCTTCACCTCCTCCTTCAAGGCCTCCT
CCTCCTCAGGCACCGCCAGGAGGGAGGAGTAGAAAAAACGGACGTCGCCC
GTCCCGACGCTCTGAGTACCCGTGGATACGGTGACGAGCACACGCCGTGG
ATGCCCCCCCCCGCTCCTGCAGCGTTTTGGTCCCTGTAATAGTCGTACGG
TTCAAAGTGTCGGACACATTAAAGGGAGGAGGGTCCGCGGTGAGTAGAAA
GGGGAGGGAAGGCAAGGGAGATGGGGATGCCGTTGGCCCGTCCCCTCTTA
TTCTTCGTCCTGGCTCTCCGACGTCTGAGGGCATTCGTTGTTGTTGACGT
TCTTCATGTTGTTGATGTTGTTGACGTTGTTGATGCTGCTGCTGCTGCCG
TCCTTCCAGTTTGGACATGGCCTCCTTGGCCCGGCCTTGCGCGATGAGGG
TTTCCATGGGCGTGGCTATCCGCTTGAGGACATGGATGAGCTCGATCCTA
TAGAGGAGGAGGGAGGAAAATGGAGATGCAGGGATGTGGGAGGGGGTATG
AGGGAAGGAAAAGCCACCACCGGCATAGAGAAGACAGAGATGGATTAGAA
AGAGATGCAGCTCTCCATACGGGGACGCAGCGCAAGGGATTACCCGGGTG
GCTTGACTAAACGCGACCTGCACTTTAAGGGCGCTTCCTCTGCGAGGATT
TCATAAATGGCTTGTGCCGATGGAGCTCGACACTTGACCGTGCATAGCAT
GACGTCCGCACACATAAAATCATGGAAGCTTTTGACCTCCCTCCCCTCCC
TCCCTCACTCCCTTCTCCCTGTACTCACTCTTGTTTGGCTGTCAGCGCCA
ATGTTTCGAAGAGCCGCAAGAAAAGGGGGTCATCGAGGTCGTATGTTAGG
ACACGGAGGTAGGCCATGACCCTGT
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Coding sequence (CDS) from alignment at scaffold_17:619370..620344+

>mRNA_6984 ID=mRNA_6984|Name=jgi.p|Nanoce1779_2|597054|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_17:619370..620344+ (Nannochloropsis oceanica)
ATGTTGTTGATGTTGTTGACGTTGTTGATGCTGCTGCTGCTGCCGTCCTT
CCAGTTTGGACATGGCCTCCTTGGCCCGGCCTTGCGCGATGAGGGTTTCC
ATGGGCGTGGCTATCCGCTTGAGGACATGGATGAGCTCGATCCTATAGAG
GAGGAGGGAGGAAAATGGAGATGCAGGGATGTGGGAGGGGGTATGAGGGA
AGGAAAAGCCACCACCGGCATAGAGAAGACAGAGATGGATTAG
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Synonyms
Publications