jgi.p|Nanoce1779_2|118514, mRNA_6981 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|118514
Unique NamemRNA_6981
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1163
Alignment locationscaffold_17:611156..612613 -

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Properties
Property NameValue
TranscriptId118600
TrackFilteredModels2
ProteinId118514
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:611156..612613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118514gene_6981Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118514mRNA_6981-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6981CDS_6981Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6981 ID=mRNA_6981|Name=jgi.p|Nanoce1779_2|118514|organism=Nannochloropsis oceanica|type=mRNA|length=1163bp
TAAGAAAATGGGCATGGATAGTAATTGCCCTTTATCAAAATGAAGGGAAG
CCACCTATCGCAGGGCTCATTGGGAGTGCAGGGTGTGGACGACGAGGACC
TCGAAGATGATGTAGAAGAGGAAATGGCAGCCTATGGGTAGAGGATTAGA
AGGAGTTGTTGCCGTTGTAGTCGCAGCCGTGGTAGTGGTGGTGGTACTTG
TAGTATGACTGGTAGTGTTACCAGCAGTGTAAACGCAGTAATCAACTAGA
GCCGTCCGCTCGGTGCGAAGAGCCCCCTGCATTGCTTCGCCTCGTGACTT
ATGATTCTTTCCCCTCTCTCCCTCCCGCCCTTGTTTTCCCTCCCTTCCTT
TCTCCCCTCCCAGGGCATGAGGACACACCAACCAGAAAGAGGAGGAGGAG
GAGGAGGATACTCCGACCGTGAGAGTAGCAGCAGCAACAACAGCAGCCAC
CAGACGCACCTTCTTGAACATTCTTCTTTTGGCGCCCTTGCCCTCACCCA
CGCCATTTCTCTTGGCGACAGCGACGCCCTCATGAAAGTCATCGATTCAG
GCATCCCCATCTCTGTCCTAGGGTCCGGTGCTGCCTTACATCTGCTAGCC
CGCAACGCTGCCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCCTCACCCT
CCTCCTCCAGCACGGCGCTGGAGCTGATGGAGGAATTGACGCCTTGGACG
AGGAAGGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTTTCCCTCCCTCCC
GCTGTCAGTCTCCTTCTCGACTACAAGGCCGACATCAATCTTCTCTCCCC
TCCTCCTTCCACCTCCTCCCCTCTCCATATCGCCGCCCAACGAAAGGATG
AAGAAATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGAGGGGAAGAGAGG
GATGGGAAGGGCAAGACCCCAGGAGACTATTTCCCAGAATTGGCGGTGTT
GACTGAGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGGAAGGAGGGGGAG
GAGAAGCTAGTAAATAATCGAGGCTCCCAAAGGAATTGAGAATGTTAGAA
CACGAGTGCGTAAAAATTTTTTTAAAAAAACGCACGTATAGTTTGGTCAG
TTGTAAGCTTGGCGCTATTCCCCAGCTTTATTTATGCGTAGAACTACAAC
ACGTTATATGTCT
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protein sequence of jgi.p|Nanoce1779_2|118514

>mRNA_6981-protein ID=mRNA_6981-protein|Name=jgi.p|Nanoce1779_2|118514|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MILSPLSLPPLFSLPSFLPSQGMRTHQPERGGGGGGYSDRESSSSNNSSH
QTHLLEHSSFGALALTHAISLGDSDALMKVIDSGIPISVLGSGAALHLLA
RNAASLEAPSLLLLLTLLLQHGAGADGGIDALDEEGLSPLHRCVALSLPP
AVSLLLDYKADINLLSPPPSTSSPLHIAAQRKDEEMCLLLLGRGARGEER
DGKGKTPGDYFPELAVLTEGNEKRKGGEREGGGGEASK*
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mRNA from alignment at scaffold_17:611156..612613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6981 ID=mRNA_6981|Name=jgi.p|Nanoce1779_2|118514|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_17:611156..612613- (Nannochloropsis oceanica)
TAAGAAAATGGGCATGGATAGTAATTGCCCTTTATCAAAATGAAGGGAAG
CCACCTATCGCAGGGCTCATTGGGAGTGCAGGGTGTGGACGACGAGGACC
TCGAAGATGATGTAGAAGAGGAAATGGCAGCCTATGGGTAGAGGATTAGA
AGGAGTTGTTGCCGTTGTAGTCGCAGCCGTGGTAGTGGTGGTGGTACTTG
TAGTATGACTGGTAGTGTTACCAGCAGTGTAAACGCAGTAATCAACTAGA
GCCGTCCGCTCGGTGCGAAGAGCCCCCTGCATTGCTTCGCCTCGTGACTT
ATGATTCTTTCCCCTCTCTCCCTCCCGCCCTTGTTTTCCCTCCCTTCCTT
TCTCCCCTCCCAGGGCATGAGGACACACCAACCAGAAAGAGGAGGAGGAG
GAGGAGGATACTCCGACCGTGAGAGTAGCAGCAGCAACAACAGCAGCCAC
CAGACGCACCTTCTTGAACATTCTTCTTTTGGCGCCCTTGCCCTCACCCA
CGCCATTTCTCTTGGCGACAGCGACGCCCTCATGAAAGTCATCGATTCAG
GTACCTCTTCTCCCTTTCCTCCCTTCCTCTTTCCGTCTCTCCTTCTTCTC
CTCCAATATCGCGCTGCAGACTATTCCATACCTACCTACCTACCTATCTC
CCTCCCTCCCTCCCTTCTCCTTCCCCTCCCTCCCTTCTAGGCATCCCCAT
CTCTGTCCTAGGGTCCGGTGCTGCCTTACATCTGCTAGCCCGCAACGCTG
CCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCCTCACCCTCCTCCTCCAG
CACGGCGCTGGAGCTGATGGAGGAATTGACGCCTTGGACGAGGTAGAAAC
AGACAGTCCCTCTCGTCTCCCCTCCTTTCTTCCCTCCATTCTTTCTTTAA
GAAAGAGCCTTCTTGCTTTCCGGTCGCGGTATGACGTAAATTTCTGCTCC
ATCCTCCCTTCTCCTCCCTTCTACCCCCCTGTCTCCCTTTTTCACAGGAA
GGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTTTCCCTCCCTCCCGCTGT
CAGTCTCCTTCTCGACTACAAGGCCGACATCAATCTTCTCTCCCCTCCTC
CTTCCACCTCCTCCCCTCTCCATATCGCCGCCCAACGAAAGGATGAAGAA
ATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGAGGGGAAGAGAGGGATGG
GAAGGGCAAGACCCCAGGAGACTATTTCCCAGAATTGGCGGTGTTGACTG
AGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGGAAGGAGGGGGAGGAGAA
GCTAGTAAATAATCGAGGCTCCCAAAGGAATTGAGAATGTTAGAACACGA
GTGCGTAAAAATTTTTTTAAAAAAACGCACGTATAGTTTGGTCAGTTGTA
AGCTTGGCGCTATTCCCCAGCTTTATTTATGCGTAGAACTACAACACGTT
ATATGTCT
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Coding sequence (CDS) from alignment at scaffold_17:611156..612613-

>mRNA_6981 ID=mRNA_6981|Name=jgi.p|Nanoce1779_2|118514|organism=Nannochloropsis oceanica|type=CDS|length=2151bp|location=Sequence derived from alignment at scaffold_17:611156..612613- (Nannochloropsis oceanica)
GAAGGTTTGTCCCCCCTCCACCGTTGTGTGGCCCTTTCCCTCCCTCCCGC
TGTCAGTCTCCTTCTCGACTACAAGGCCGACATCAATCTTCTCTCCCCTC
CTCCTTCCACCTCCTCCCCTCTCCATATCGCCGCCCAACGAAAGGATGAA
GAAATGTGTCTGTTGTTGCTGGGAAGGGGAGCCAGAGGGGAAGAGAGGGA
TGGGAAGGGCAAGACCCCAGGAGACTATTTCCCAGAATTGGCGGTGTTGA
CTGAGGGGAATGAGAAGAGGAAGGGAGGAGAAAGGGAAGGAGGGGGAGGA
GAAGCTAGTAAATAAGCATCCCCATCTCTGTCCTAGGGTCCGGTGCTGCC
TTACATCTGCTAGCCCGCAACGCTGCCTCCCTCGAAGCCCCTTCCCTGCT
CCTCCTCCTCACCCTCCTCCTCCAGCACGGCGCTGGAGCTGATGGAGGAA
TTGACGCCTTGGACGAGATGATTCTTTCCCCTCTCTCCCTCCCGCCCTTG
TTTTCCCTCCCTTCCTTTCTCCCCTCCCAGGGCATGAGGACACACCAACC
AGAAAGAGGAGGAGGAGGAGGAGGATACTCCGACCGTGAGAGTAGCAGCA
GCAACAACAGCAGCCACCAGACGCACCTTCTTGAACATTCTTCTTTTGGC
GCCCTTGCCCTCACCCACGCCATTTCTCTTGGCGACAGCGACGCCCTCAT
GAAAGTCATCGATTCAGGAAGGTTTGTCCCCCCTCCACCGTTGTGTGGCC
CTTTCCCTCCCTCCCGCTGTCAGTCTCCTTCTCGACTACAAGGCCGACAT
CAATCTTCTCTCCCCTCCTCCTTCCACCTCCTCCCCTCTCCATATCGCCG
CCCAACGAAAGGATGAAGAAATGTGTCTGTTGTTGCTGGGAAGGGGAGCC
AGAGGGGAAGAGAGGGATGGGAAGGGCAAGACCCCAGGAGACTATTTCCC
AGAATTGGCGGTGTTGACTGAGGGGAATGAGAAGAGGAAGGGAGGAGAAA
GGGAAGGAGGGGGAGGAGAAGCTAGTAAATAAGCATCCCCATCTCTGTCC
TAGGGTCCGGTGCTGCCTTACATCTGCTAGCCCGCAACGCTGCCTCCCTC
GAAGCCCCTTCCCTGCTCCTCCTCCTCACCCTCCTCCTCCAGCACGGCGC
TGGAGCTGATGGAGGAATTGACGCCTTGGACGAGATGATTCTTTCCCCTC
TCTCCCTCCCGCCCTTGTTTTCCCTCCCTTCCTTTCTCCCCTCCCAGGGC
ATGAGGACACACCAACCAGAAAGAGGAGGAGGAGGAGGAGGATACTCCGA
CCGTGAGAGTAGCAGCAGCAACAACAGCAGCCACCAGACGCACCTTCTTG
AACATTCTTCTTTTGGCGCCCTTGCCCTCACCCACGCCATTTCTCTTGGC
GACAGCGACGCCCTCATGAAAGTCATCGATTCAGGAAGGTTTGTCCCCCC
TCCACCGTTGTGTGGCCCTTTCCCTCCCTCCCGCTGTCAGTCTCCTTCTC
GACTACAAGGCCGACATCAATCTTCTCTCCCCTCCTCCTTCCACCTCCTC
CCCTCTCCATATCGCCGCCCAACGAAAGGATGAAGAAATGTGTCTGTTGT
TGCTGGGAAGGGGAGCCAGAGGGGAAGAGAGGGATGGGAAGGGCAAGACC
CCAGGAGACTATTTCCCAGAATTGGCGGTGTTGACTGAGGGGAATGAGAA
GAGGAAGGGAGGAGAAAGGGAAGGAGGGGGAGGAGAAGCTAGTAAATAAG
CATCCCCATCTCTGTCCTAGGGTCCGGTGCTGCCTTACATCTGCTAGCCC
GCAACGCTGCCTCCCTCGAAGCCCCTTCCCTGCTCCTCCTCCTCACCCTC
CTCCTCCAGCACGGCGCTGGAGCTGATGGAGGAATTGACGCCTTGGACGA
GATGATTCTTTCCCCTCTCTCCCTCCCGCCCTTGTTTTCCCTCCCTTCCT
TTCTCCCCTCCCAGGGCATGAGGACACACCAACCAGAAAGAGGAGGAGGA
GGAGGAGGATACTCCGACCGTGAGAGTAGCAGCAGCAACAACAGCAGCCA
CCAGACGCACCTTCTTGAACATTCTTCTTTTGGCGCCCTTGCCCTCACCC
ACGCCATTTCTCTTGGCGACAGCGACGCCCTCATGAAAGTCATCGATTCA
G
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Synonyms
Publications