jgi.p|Nanoce1779_2|118588, mRNA_6980 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|118588
Unique NamemRNA_6980
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1301
Alignment locationscaffold_17:609609..611153 -

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Properties
Property NameValue
TranscriptId118674
TrackFilteredModels2
ProteinId118588
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:609609..611153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118588gene_6980Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|118588mRNA_6980-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6980CDS_6980Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6980 ID=mRNA_6980|Name=jgi.p|Nanoce1779_2|118588|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp
TGATTACACTGACTGCCGCTTTGGCACACTCCCTGCTTGATAGATTGGTG
CTGGAACGCGTGCCCCGCTTGCTGCTTTCTCTATTCCTTCTACCTCCGCA
ATTTTCTCACTACTGTCCTATTTGTTAAGGTCTCGTGGTTGTGCTTTGGA
CTGCACCCGTCGTGTACAGGCTTGTCGCATGAGAGAACCTTGTTGCCTCG
CACACGATGGGCCATGCGTGCTCGCGCTCCCGCCTCGACAAACACAGTTG
CTTGTGTCGCTGAGTGCGACCAAGGGGCAAGGGGCTTGTCGCCGTGGCAA
GAGAGCGCGTCCTGGCGTTTGCACACTCCTGTCTCATTGTCCGTCCACTT
ATTCCTGTGTCGCTCGCAGGGCGTTATGCTCTTGTTTGTGCTTATTTCAT
GCCCTTCGTCTCCCACCCAACAGACAGGGGTGTCTCTTCCGCGAGCGCGC
CTTCTTTCTTTCATCCACTCGACCACTGCACACCAACCAAGAGCCATGGC
CGGCCGCGGAAGAGGCCGGGGCATGACGTTACCAGCATGGATGACCAAAG
AAGGCGGCCCAGCCCCCGCCGCAGGCTCCAGCACCAGCACCAATGGCAGC
AGCAGCAGCAGCAGTCTGGGAGGCCTCCAAGAATCCGGCAGTGGCAGTAG
TAGTTCCTTAAGCAATAGCCGCAAATCACGTTGGGGTGGCGACTCTCCCC
AGAGGGCGTCATCACCCGCCCCCGCGCCCGTCCGTGCCCCCTCTCCAATG
CCAGCTCCTGTTCCTGCTCCTGCTCCTGCACCTGGACCGACACCAGTTCG
GGTGCCATCTCCTTCTTCCAACAGCACAAGCAGTACCACCATCCAAGCCT
CTGCCACCACCACGACAGCCACGCCTACAGCAGCGACGGCGAGCCCCCGT
GTGCCATCCCCCTCGGCAGCGTATGGAAGCCTGGCCGCCGGTGGAGGGAG
AGGAGGAGGAGCAGCTGGAGGAATGGGAGTCCACCAGCACATGCACATGC
AGCAGCAACAGCTGCCGCAGCACCAGGCGTATGGATCATGGCAGCAGCAA
CACCACTTCCAACCACAGCTGCAGCAGCAGTATCAGCAGAGCCAACAGGA
CTACTACAACCAATATTATCAACAGCAGCAGCAGGTATATCTTCTTCCTT
CTTGAAAAATCTCTCACGTCTGCCACACGACCTTGCCTCAAGGGCCAATC
GTCCACCTGACCTTCTCCTTTCTCCCTTCCCTCCTTCCACAGCAATACTA
CGGACAAGTTATGCAAGCCGCCTCCTACACCACCCCAGCCACTGCCGCTG
C
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protein sequence of jgi.p|Nanoce1779_2|118588

>mRNA_6980-protein ID=mRNA_6980-protein|Name=jgi.p|Nanoce1779_2|118588|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MRARAPASTNTVACVAECDQGARGLSPWQESASWRLHTPVSLSVHLFLCR
SQGVMLLFVLISCPSSPTQQTGVSLPRARLLSFIHSTTAHQPRAMAGRGR
GRGMTLPAWMTKEGGPAPAAGSSTSTNGSSSSSSLGGLQESGSGSSSSLS
NSRKSRWGGDSPQRASSPAPAPVRAPSPMPAPVPAPAPAPGPTPVRVPSP
SSNSTSSTTIQASATTTTATPTAATASPRVPSPSAAYGSLAAGGGRGGGA
AGGMGVHQHMHMQQQQLPQHQAYGSWQQQHHFQPQLQQQYQQSQQDYYNQ
YYQQQQQVYLLPS*
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mRNA from alignment at scaffold_17:609609..611153-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6980 ID=mRNA_6980|Name=jgi.p|Nanoce1779_2|118588|organism=Nannochloropsis oceanica|type=mRNA|length=1545bp|location=Sequence derived from alignment at scaffold_17:609609..611153- (Nannochloropsis oceanica)
TGATTACACTGACTGCCGCTTTGGCACACTCCCTGCTTGATAGATTGGTG
CTGGAACGCGTGCCCCGCTTGCTGCTTTCTCTATTCCTTCTACCTCCGCA
ATTTTCTCACTACTGTCCTATTTGTTAAGGTCTCGTGGTTGTGCTTTGGA
CTGCACCCGTCGTGTACAGGCTTGTCGCATGAGAGAACCTTGTTGCCTCG
CACACGATGGGCCATGCGTGCTCGCGCTCCCGCCTCGACAAACACAGTTG
CTTGTGTCGCTGAGTGCGACCAAGGGGCAAGGGGCTTGTCGCCGTGGCAA
GAGAGCGCGTCCTGGCGTTTGCACACTCCTGTCTCATTGTCCGTCCACTT
ATTCCTGTGTCGCTCGCAGGGCGTTATGCTCTTGTTTGTGCTTATTTCAT
GCCCTTCGTCTCCCACCCAACAGACAGGGGTGTCTCTTCCGCGAGCGCGC
CTTCTTTCTTTCATCCACTCGACCACTGCACACCAACCAAGAGCCATGGC
CGGCCGCGGAAGAGGCCGGGGCATGACGTTACCAGCGTAAGTACCTGTGT
GTCTTGTGCTTCTGATGTACGTGTCTCGTCTGTTGTTTTATTCTTCCGCA
ACAACGCTCATCATCGTCCTGAACCTAACACACATTACGCCCGCCCTACC
AAATGTGGGAAATCAATTGCGCTACCAGAGCTGCTGCTCTATAGATAGTC
TCCGTTATTATGCCTGACCTTCCTTCTTACACTCACGCATGCGTTCCACC
CACTCCCGCCTCAAACTTTTTTCTTGACAGATGGATGACCAAAGAAGGCG
GCCCAGCCCCCGCCGCAGGCTCCAGCACCAGCACCAATGGCAGCAGCAGC
AGCAGCAGTCTGGGAGGCCTCCAAGAATCCGGCAGTGGCAGTAGTAGTTC
CTTAAGCAATAGCCGCAAATCACGTTGGGGTGGCGACTCTCCCCAGAGGG
CGTCATCACCCGCCCCCGCGCCCGTCCGTGCCCCCTCTCCAATGCCAGCT
CCTGTTCCTGCTCCTGCTCCTGCACCTGGACCGACACCAGTTCGGGTGCC
ATCTCCTTCTTCCAACAGCACAAGCAGTACCACCATCCAAGCCTCTGCCA
CCACCACGACAGCCACGCCTACAGCAGCGACGGCGAGCCCCCGTGTGCCA
TCCCCCTCGGCAGCGTATGGAAGCCTGGCCGCCGGTGGAGGGAGAGGAGG
AGGAGCAGCTGGAGGAATGGGAGTCCACCAGCACATGCACATGCAGCAGC
AACAGCTGCCGCAGCACCAGGCGTATGGATCATGGCAGCAGCAACACCAC
TTCCAACCACAGCTGCAGCAGCAGTATCAGCAGAGCCAACAGGACTACTA
CAACCAATATTATCAACAGCAGCAGCAGGTATATCTTCTTCCTTCTTGAA
AAATCTCTCACGTCTGCCACACGACCTTGCCTCAAGGGCCAATCGTCCAC
CTGACCTTCTCCTTTCTCCCTTCCCTCCTTCCACAGCAATACTACGGACA
AGTTATGCAAGCCGCCTCCTACACCACCCCAGCCACTGCCGCTGC
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Coding sequence (CDS) from alignment at scaffold_17:609609..611153-

>mRNA_6980 ID=mRNA_6980|Name=jgi.p|Nanoce1779_2|118588|organism=Nannochloropsis oceanica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_17:609609..611153- (Nannochloropsis oceanica)
ATGGATGACCAAAGAAGGCGGCCCAGCCCCCGCCGCAGGCTCCAGCACCA
GCACCAATGGCAGCAGCAGCAGCAGCAGTCTGGGAGGCCTCCAAGAATCC
GGCAGTGGCAGTAGTAGTTCCTTAAGCAATAGCCGCAAATCACGTTGGGG
TGGCGACTCTCCCCAGAGGGCGTCATCACCCGCCCCCGCGCCCGTCCGTG
CCCCCTCTCCAATGCCAGCTCCTGTTCCTGCTCCTGCTCCTGCACCTGGA
CCGACACCAGTTCGGGTGCCATCTCCTTCTTCCAACAGCACAAGCAGTAC
CACCATCCAAGCCTCTGCCACCACCACGACAGCCACGCCTACAGCAGCGA
CGGCGAGCCCCCGTGTGCCATCCCCCTCGGCAGCGTATGGAAGCCTGGCC
GCCGGTGGAGGGAGAGGAGGAGGAGCAGCTGGAGGAATGGGAGTCCACCA
GCACATGCACATGCAGCAGCAACAGCTGCCGCAGCACCAGGCGTATGGAT
CATGGCAGCAGCAACACCACTTCCAACCACAGCTGCAGCAGCAGTATCAG
CAGAGCCAACAGGACTACTACAACCAATATTATCAACAGCAGCAGCAGGT
ATATCTTCTTCCTTCTTGAATGCGTGCTCGCGCTCCCGCCTCGACAAACA
CAGTTGCTTGTGTCGCTGAGTGCGACCAAGGGGCAAGGGGCTTGTCGCCG
TGGCAAGAGAGCGCGTCCTGGCGTTTGCACACTCCTGTCTCATTGTCCGT
CCACTTATTCCTGTGTCGCTCGCAGGGCGTTATGCTCTTGTTTGTGCTTA
TTTCATGCCCTTCGTCTCCCACCCAACAGACAGGGGTGTCTCTTCCGCGA
GCGCGCCTTCTTTCTTTCATCCACTCGACCACTGCACACCAACCAAGAGC
CATGGCCGGCCGCGGAAGAGGCCGGGGCATGACGTTACCAGCATGGATGA
CCAAAGAAGGCGGCCCAGCCCCCGCCGCAGGCTCCAGCACCAGCACCAAT
GGCAGCAGCAGCAGCAGCAGTCTGGGAGGCCTCCAAGAATCCGGCAGTGG
CAGTAGTAGTTCCTTAAGCAATAGCCGCAAATCACGTTGGGGTGGCGACT
CTCCCCAGAGGGCGTCATCACCCGCCCCCGCGCCCGTCCGTGCCCCCTCT
CCAATGCCAGCTCCTGTTCCTGCTCCTGCTCCTGCACCTGGACCGACACC
AGTTCGGGTGCCATCTCCTTCTTCCAACAGCACAAGCAGTACCACCATCC
AAGCCTCTGCCACCACCACGACAGCCACGCCTACAGCAGCGACGGCGAGC
CCCCGTGTGCCATCCCCCTCGGCAGCGTATGGAAGCCTGGCCGCCGGTGG
AGGGAGAGGAGGAGGAGCAGCTGGAGGAATGGGAGTCCACCAGCACATGC
ACATGCAGCAGCAACAGCTGCCGCAGCACCAGGCGTATGGATCATGGCAG
CAGCAACACCACTTCCAACCACAGCTGCAGCAGCAGTATCAGCAGAGCCA
ACAGGACTACTACAACCAATATTATCAACAGCAGCAGCAGGTATATCTTC
TTCCTTCTTGAATGCGTGCTCGCGCTCCCGCCTCGACAAACACAGTTGCT
TGTGTCGCTGAGTGCGACCAAGGGGCAAGGGGCTTGTCGCCGTGGCAAGA
GAGCGCGTCCTGGCGTTTGCACACTCCTGTCTCATTGTCCGTCCACTTAT
TCCTGTGTCGCTCGCAGGGCGTTATGCTCTTGTTTGTGCTTATTTCATGC
CCTTCGTCTCCCACCCAACAGACAGGGGTGTCTCTTCCGCGAGCGCGCCT
TCTTTCTTTCATCCACTCGACCACTGCACACCAACCAAGAGCCATGGCCG
GCCGCGGAAGAGGCCGGGGCATGACGTTACCAGC
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Synonyms
Publications