jgi.p|Nanoce1779_2|624562, mRNA_698 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|624562
Unique Name	mRNA_698
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1689
Alignment location	scaffold_2:217268..219819 -

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Properties


Property Name	Value
TranscriptId	624648
Track	FilteredModels2
ProteinId	624562

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:217268..219819 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624562	gene_698	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|624562	mRNA_698-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_698	CDS_698	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:217268..219819-
coding sequence from alignment at scaffold_2:217268..219819-

mRNA sequence

>mRNA_698 ID=mRNA_698|Name=jgi.p|Nanoce1779_2|624562|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp
ATGGCTGAATCCGGCGTCCAGGCTTTCTTGGGCCCTGTCGTTGCTCACTC
CTACACCACAGTCGCGGCCGCTTCTACAAGCCCCGTCATGGAATCCCAAG
ACCGGGCTTCACTGGCGCCCAAGCTGTTCGACTGGTACAGCAAGAATGGG
ATCAAGGACATCAGCAAGGTGTGTGTGGGGCCAGCAAGCCAACAAGAGTG
GGGGATGGGCTTAGTGGCCACGGCGCCCATCAAACGAGGGGAGCAAATCG
CCACCATCCCATTGACCTTGTGCCTGTCCATGGACAGCGTGCGTCTCTCA
CCCGTGGGCAAGGCCGTCGGGGGTTTCGAGCCCACGTTAGGTGAAGCATC
GTTGATTGCATTGCAGCTGCTGTATGAGGCCAGCCTCGGGCCCAAGTCCA
AGTATGCCGTCTACATCCAAAGCCTCCCCCGAGAGGGGCAAGACGGATTC
GATCACCCCCTATTCTGGTCCCCAGCCGAGCAAGCCATCCTCGCCAAGTC
ATCTACCCGGAATCTTCAAGAAACATTGATCGACGCGGTTGCCGCGGATT
TCTCTTGGATTGAATGTAATATCCTGGCGCGTGGTGCTGTGGTGGGGCTT
GGGGCCGATGCCTTCGACCTGGCTACCTATGAATGGGCTGTGGCAGTAGT
CTTATCCCGCTCTTTTTTCGCAGATAATGGCCTGCGACTCGCCCCACTTC
TGGATATGGCCAATCGCGGGGAGGGCTGCCAGAACGAGCCGGAGGTGGGG
GGATTGGGGATTTTTGGGGGAAAAGGGTTGAAAATTGCAGCGGACCGCGA
CACAAACAAAGGACAAGAGATTGTAATTTCTTATGGGCCCAAGAGCGGGA
TTGAGTTTTTGGAGGACCATGGCTTTGTTCCACCTCCGGTGGCGGGGAAT
GTGCTGGTGGGGGGTTTGTGTGCGTTGACATTTGAGCTGTCGAAGGAGGA
GGATCGTTTTTTTGATGATAAAGAGGATGTCATGTCGGAGTTGAAGTTGC
CGATGGCATTTTCGTTTGATGTGCGGAGTGATGGAGATGTAGACCCGGAG
ATGTTGCAGTTCTTGCGGTTCTTGAACTTGGGAGGGAAAGATGCGTTTTT
GTTGGAGGCGGTCTTTCGGAATGAGGTTTGGTCGTTTATGGAAGCACCAG
TGAGTGAGGAGAATGAGCAGAAGGTGGACAACATGATCATTCAGGCGTGT
ACGAAGGCCTTGGCGGACTTTGAGGAAGCTGAGAAGCTGTCGGAAAATAT
GTTGAAAACGTCGGGGGTGAGTCCTTTGACAATTGCGAGACTGGAGAGCC
TGACTAGGTTGCTATTTGAGGTGGTTGTGACTGCCGCCGACGGCAAATAC
GAATGCTGCAGCCTCCTGTCTCCCGCCCTTAAAATGCTTGTATGTGCTTT
TGGGCTTCCTGACTTCCCATAGCGGTCTTCCAACATATGTACGACTATGC
TGACACTGCGAGACTGCTTGATTAAATTGATGCATCTCAGCTCCTCCTTC
TCTCTTTTCCTTTCCGCATATCATCCTCCCTCTTGTCCTCTCCTATCTAG
TCATCGGTCTCCAGCATAAGAAGATAGGAAAGAAACAAGTTGCTGCCTAA
ACAGACCGAAATTTGAACGCGCCTTTCTCCGACATCTCACAACCCCCCTC
TTCATCCCCTTCCCTCCCCTCCTCCCACCTTGCCCCATC

protein sequence of jgi.p|Nanoce1779_2|624562

>mRNA_698-protein ID=mRNA_698-protein|Name=jgi.p|Nanoce1779_2|624562|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MAESGVQAFLGPVVAHSYTTVAAASTSPVMESQDRASLAPKLFDWYSKNG
IKDISKVCVGPASQQEWGMGLVATAPIKRGEQIATIPLTLCLSMDSVRLS
PVGKAVGGFEPTLGEASLIALQLLYEASLGPKSKYAVYIQSLPREGQDGF
DHPLFWSPAEQAILAKSSTRNLQETLIDAVAADFSWIECNILARGAVVGL
GADAFDLATYEWAVAVVLSRSFFADNGLRLAPLLDMANRGEGCQNEPEVG
GLGIFGGKGLKIAADRDTNKGQEIVISYGPKSGIEFLEDHGFVPPPVAGN
VLVGGLCALTFELSKEEDRFFDDKEDVMSELKLPMAFSFDVRSDGDVDPE
MLQFLRFLNLGGKDAFLLEAVFRNEVWSFMEAPVSEENEQKVDNMIIQAC
TKALADFEEAEKLSENMLKTSGVSPLTIARLESLTRLLFEVVVTAADGKY
ECCSLLSPALKMLVCAFGLPDFP*

mRNA from alignment at scaffold_2:217268..219819-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_698 ID=mRNA_698|Name=jgi.p|Nanoce1779_2|624562|organism=Nannochloropsis oceanica|type=mRNA|length=2552bp|location=Sequence derived from alignment at scaffold_2:217268..219819- (Nannochloropsis oceanica)
ATGGCTGAATCCGGCGTCCAGGCTTTCTTGGGCCCTGTCGTTGCTCACTC
CTACACCACAGTCGCGGCCGCTTCTACAAGCCCCGTCATGGAATCCCAAG
ACCGGGCTTCACTGGCGCCCAAGCTGTTCGACTGGTACAGCAAGAATGGG
ATCAAGGACATCAGCAAGGTGTGTGTGGGGCCAGCAAGCCAACAAGAGTG
GGGGATGGGCTTAGTGGCCACGGCGCCCATCAAACGAGGGGAGCAAATCG
CCACCATCCCATTGACCTTGTGCCTGTCCATGGACAGCGTGCGTCTCTCA
CCCGTGGGCAAGGCCGTCGGGGGTTTCGAGCCCACGTTAGGTGAAGCATC
GTTGATTGCATTGCAGCTGCTGTATGAGGCCAGCCTCGGGCCCAAGTCCA
AGTATGCCGTCTACATCCAAAGCCTCCCCCGAGAGGGGCAAGACGGATTC
GATCACCCCCTATTCTGGTCCCCAGCCGAGCAAGCCATCCTCGCCAAGTC
ATCTACCCGGAATCTTCAAGAAACATTGATCGACGCGGTTGCCGCGGATT
TCTCTTGGATTGAATGTAATATCCTGGCGCGTGGTGCTGTGGTGGGGCTT
GGGGCCGATGCCTTCGACCTGGCTACCTATGAATGGGCTGTGGCAGTAGT
CTTATCCCGCTCTTTTTTCGCAGATAATGGCCTGCGACTCGCCCCACTTC
TGGATATGGCCAATCGCGGGGAGGGCTGCCAGAACGAGCCGGAGGTGGGG
GGATTGGGGATTTTTGGGGGAAAAGGGTTGAAAATTGCAGCGGACCGCGA
CACAAACAAAGGACAAGAGATTGTAATTTCTTATGGGCCCAAGAGCGGGA
TTGAGTTTTTGGAGGACCATGGCTTTGTTCCACCTCCGGTGGCGGGGAAT
GTGCTGGTGGGGGGTTTGTGTGCGTTGACATTTGAGCTGTCGAAGGAGGA
GGATCGTTTTTTTGATGATAAAGAGGATGTCATGTCGGAGTTGAAGTTGC
CGATGGCATTTTCGTTTGATGTGCGGAGTGATGGAGATGTAGACCCGGAG
ATGTTGCAGTTCTTGCGGTTCTTGAACTTGGGAGGGAAAGATGCGTTTTT
GTTGGAGGCGGTCTTTCGGAATGAGGTTTGGTCGTTTATGGAAGCACCAG
TGAGTGAGGAGAATGAGCAGAAGGTGGACAACATGATCATTCAGGCGTGT
ACGAAGGCCTTGGCGGACTTTGAGGAAGCTGAGAAGCTGTCGGAAAATAT
GTTGAAAACGTCGGGGGTGAGTCCTTTGACAATTGCGAGACTGGAGAGCC
TGACTAGGGTGAGGGAGTCGGAAAAGGGTGCCCTGGAAGCGACCCAGGCG
TGGGCAAATCGCGATTTGATGACGGGGGATTTGAAGGTTTACTACCAGGA
GAGACGGTTGGAGGAATTGCAGTTGTCCGGCCCGCTGATGGACAATGAGC
TGATGGACAATGCGGGGGGAAGGAGGACGACGAACTTGGATTGGTAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGTGAAAGGGCATGAAAATTT
GGGGAAATTACATTGAGCGCGAAGGACTGGGTGCATGAACGAAGCTGTAT
TGAAAGCGGCAATAAGAATGACCTTTGATGATACTTTTGTGCTGTTCAAC
ATTAGAATTGTGAGTTTGACTCCATGTAATCAATTTCTTTCTTTTTTGGT
GGTAAAGTCGAAGGCCAAGCAGGGCGGCTGCATCAAGTAGTTTCAGTACA
GCGTACGCCCTCCCTTCCTCCCTCCGCCCTTCCCTCCCTCTTTCCATGAT
TTCGCCGCGTCACTCCACAGACGTTACTAACTCACATAACATTCACTTAT
CCTGTTTTCGTTCTTTCCCTCAACGCTCCCTCACTTTCTTCTTTCCGCTC
TTCTTTTCCCCCCCGCACAATCATCCTCTCCAACCACCATATTTTCAATC
ATCGCCTTTCTCTTTCTCTCTATTGTAGTTCTTGCAGTATCTTTTGGTCT
ATCTCCCCCTCTCTCCCCTTCCCCCCCCCCCCCCCCCCACCCCCGACGAT
CACTTCCCCTTTATATCTCCGAGACACCGAGACTGAGTGACGGGCCGCTC
TTCTACTGCTGCTGCTGGTGGTGGTGGTGCTAATGTTGCTGCTGCTGCTA
ATGCTCCTGTTGCTCCCGTAGTTGCTATTTGAGGTGGTTGTGACTGCCGC
CGACGGCAAATACGAATGCTGCAGCCTCCTGTCTCCCGCCCTTAAAATGC
TTGTATGTGCTTTTGGGCTTCCTGACTTCCCATAGCGGTCTTCCAACATA
TGTACGACTATGCTGACACTGCGAGACTGCTTGATTAAATTGATGCATCT
CAGCTCCTCCTTCTCTCTTTTCCTTTCCGCATATCATCCTCCCTCTTGTC
CTCTCCTATCTAGTCATCGGTCTCCAGCATAAGAAGATAGGAAAGAAACA
AGTTGCTGCCTAAACAGACCGAAATTTGAACGCGCCTTTCTCCGACATCT
CACAACCCCCCTCTTCATCCCCTTCCCTCCCCTCCTCCCACCTTGCCCCA
TC

Coding sequence (CDS) from alignment at scaffold_2:217268..219819-

>mRNA_698 ID=mRNA_698|Name=jgi.p|Nanoce1779_2|624562|organism=Nannochloropsis oceanica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_2:217268..219819- (Nannochloropsis oceanica)
TTGCTATTTGAGGTGGTTGTGACTGCCGCCGACGGCAAATACGAATGCTG
CAGCCTCCTGTCTCCCGCCCTTAAAATGCTTGTATGTGCTTTTGGGCTTC
CTGACTTCCCATAGATGGCTGAATCCGGCGTCCAGGCTTTCTTGGGCCCT
GTCGTTGCTCACTCCTACACCACAGTCGCGGCCGCTTCTACAAGCCCCGT
CATGGAATCCCAAGACCGGGCTTCACTGGCGCCCAAGCTGTTCGACTGGT
ACAGCAAGAATGGGATCAAGGACATCAGCAAGGTGTGTGTGGGGCCAGCA
AGCCAACAAGAGTGGGGGATGGGCTTAGTGGCCACGGCGCCCATCAAACG
AGGGGAGCAAATCGCCACCATCCCATTGACCTTGTGCCTGTCCATGGACA
GCGTGCGTCTCTCACCCGTGGGCAAGGCCGTCGGGGGTTTCGAGCCCACG
TTAGGTGAAGCATCGTTGATTGCATTGCAGCTGCTGTATGAGGCCAGCCT
CGGGCCCAAGTCCAAGTATGCCGTCTACATCCAAAGCCTCCCCCGAGAGG
GGCAAGACGGATTCGATCACCCCCTATTCTGGTCCCCAGCCGAGCAAGCC
ATCCTCGCCAAGTCATCTACCCGGAATCTTCAAGAAACATTGATCGACGC
GGTTGCCGCGGATTTCTCTTGGATTGAATGTAATATCCTGGCGCGTGGTG
CTGTGGTGGGGCTTGGGGCCGATGCCTTCGACCTGGCTACCTATGAATGG
GCTGTGGCAGTAGTCTTATCCCGCTCTTTTTTCGCAGATAATGGCCTGCG
ACTCGCCCCACTTCTGGATATGGCCAATCGCGGGGAGGGCTGCCAGAACG
AGCCGGAGGTGGGGGGATTGGGGATTTTTGGGGGAAAAGGGTTGAAAATT
GCAGCGGACCGCGACACAAACAAAGGACAAGAGATTGTAATTTCTTATGG
GCCCAAGAGCGGGATTGAGTTTTTGGAGGACCATGGCTTTGTTCCACCTC
CGGTGGCGGGGAATGTGCTGGTGGGGGGTTTGTGTGCGTTGACATTTGAG
CTGTCGAAGGAGGAGGATCGTTTTTTTGATGATAAAGAGGATGTCATGTC
GGAGTTGAAGTTGCCGATGGCATTTTCGTTTGATGTGCGGAGTGATGGAG
ATGTAGACCCGGAGATGTTGCAGTTCTTGCGGTTCTTGAACTTGGGAGGG
AAAGATGCGTTTTTGTTGGAGGCGGTCTTTCGGAATGAGGTTTGGTCGTT
TATGGAAGCACCAGTGAGTGAGGAGAATGAGCAGAAGGTGGACAACATGA
TCATTCAGGCGTGTACGAAGGCCTTGGCGGACTTTGAGGAAGCTGAGAAG
CTGTCGGAAAATATGTTGAAAACGTCGGGGGTGAGTCCTTTGACAATTGC
GAGACTGGAGAGCCTGACTAGGTTGCTATTTGAGGTGGTTGTGACTGCCG
CCGACGGCAAATACGAATGCTGCAGCCTCCTGTCTCCCGCCCTTAAAATG
CTTGTATGTGCTTTTGGGCTTCCTGACTTCCCATAGATGGCTGAATCCGG
CGTCCAGGCTTTCTTGGGCCCTGTCGTTGCTCACTCCTACACCACAGTCG
CGGCCGCTTCTACAAGCCCCGTCATGGAATCCCAAGACCGGGCTTCACTG
GCGCCCAAGCTGTTCGACTGGTACAGCAAGAATGGGATCAAGGACATCAG
CAAGGTGTGTGTGGGGCCAGCAAGCCAACAAGAGTGGGGGATGGGCTTAG
TGGCCACGGCGCCCATCAAACGAGGGGAGCAAATCGCCACCATCCCATTG
ACCTTGTGCCTGTCCATGGACAGCGTGCGTCTCTCACCCGTGGGCAAGGC
CGTCGGGGGTTTCGAGCCCACGTTAGGTGAAGCATCGTTGATTGCATTGC
AGCTGCTGTATGAGGCCAGCCTCGGGCCCAAGTCCAAGTATGCCGTCTAC
ATCCAAAGCCTCCCCCGAGAGGGGCAAGACGGATTCGATCACCCCCTATT
CTGGTCCCCAGCCGAGCAAGCCATCCTCGCCAAGTCATCTACCCGGAATC
TTCAAGAAACATTGATCGACGCGGTTGCCGCGGATTTCTCTTGGATTGAA
TGTAATATCCTGGCGCGTGGTGCTGTGGTGGGGCTTGGGGCCGATGCCTT
CGACCTGGCTACCTATGAATGGGCTGTGGCAGTAGTCTTATCCCGCTCTT
TTTTCGCAGATAATGGCCTGCGACTCGCCCCACTTCTGGATATGGCCAAT
CGCGGGGAGGGCTGCCAGAACGAGCCGGAGGTGGGGGGATTGGGGATTTT
TGGGGGAAAAGGGTTGAAAATTGCAGCGGACCGCGACACAAACAAAGGAC
AAGAGATTGTAATTTCTTATGGGCCCAAGAGCGGGATTGAGTTTTTGGAG
GACCATGGCTTTGTTCCACCTCCGGTGGCGGGGAATGTGCTGGTGGGGGG
TTTGTGTGCGTTGACATTTGAGCTGTCGAAGGAGGAGGATCGTTTTTTTG
ATGATAAAGAGGATGTCATGTCGGAGTTGAAGTTGCCGATGGCATTTTCG
TTTGATGTGCGGAGTGATGGAGATGTAGACCCGGAGATGTTGCAGTTCTT
GCGGTTCTTGAACTTGGGAGGGAAAGATGCGTTTTTGTTGGAGGCGGTCT
TTCGGAATGAGGTTTGGTCGTTTATGGAAGCACCAGTGAGTGAGGAGAAT
GAGCAGAAGGTGGACAACATGATCATTCAGGCGTGTACGAAGGCCTTGGC
GGACTTTGAGGAAGCTGAGAAGCTGTCGGAAAATATGTTGAAAACGTCGG
GGGTGAGTCCTTTGACAATTGCGAGACTGGAGAGCCTGACTAGG

Synonyms

Publications