jgi.p|Nanoce1779_2|117835, mRNA_6975 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|117835
Unique Name	mRNA_6975
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	907
Alignment location	scaffold_17:580624..581530 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	117921
Track	FilteredModels2
ProteinId	117835

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:580624..581530 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|117835	gene_6975	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|117835	mRNA_6975-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6975	CDS_6975	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:580624..581530+
coding sequence from alignment at scaffold_17:580624..581530+

mRNA sequence

>mRNA_6975 ID=mRNA_6975|Name=jgi.p|Nanoce1779_2|117835|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
GACTAAAGCTATAATATAATTACTGTTTGCTCAGCCCCTGCCTATTGGCT
GGCTGCGACGAATACCTGTGGAGAGGTGGAGGTGCAGAGACGGGGAAGGA
CATCGCATGAGACACAGTTAAGCGGTCGAAACTGCCCTTGGTTTTAGGCA
GAGGGCGTGGCCACATGGACAAAGAGAGTCCCCATTCGGTATCTGCCCCC
TTACCAGAAGGGGGGGATCGCGCCACTAGCTTAGAAATGGAATTTCAGCT
CATGAATGAGACAGATCTCAACAAAGCAAACACATTGTGTTTATGAGGCA
AAAATACTTTTTTGTACGTATTTTGGTGCCGCAATAATTGCCTTCCCCCC
CCTGAGGGGGCAGGAATCGCTCAATTTCGAACTCGGCCACCTCTTGCAGG
CAGCCTCTCACGGCATACTGAGACCCCAAATCACACTAAAATGCATTTCT
CAAACATCTAACAAGCTTGTACCATGTGTAGATGTGATGTTGTCTTGTGC
TAGATTCATTTTCAAGTCCTTTGACACTCCTTTTCCTCCTTCCCCAAGCC
CAACAGCTCCAAATGGTGGCGCGAGGCAAGCGCCGGGGCCCAAAAATCAC
GGGCAAATACTTGACCAGGCCCCTGTGGAACAAGCAATAGAGCACCAGAT
ACGACTCCAAGGCTGCCAAGGATTTGGCATGAAATTACTACCACAAGAAA
TGGTGGGCTGGAGAGATGAAGCGCCGGGCGGACCGGGACGATGTCTCCGC
AGCAGCAGCAGCGGCGGGGTGCGATGATGATGGGCCTGCACTCGTTCCCC
CTCGACATGGCAGCAGCCAAAACCAGGCAGATACAAGCTAAATAGGGTCA
ACTGTTCAGAGCATGCAGCCGTGTGCTCCCTGCTTGCTCTGGGCCTAGGT
CTACTTT

protein sequence of jgi.p|Nanoce1779_2|117835

>mRNA_6975-protein ID=mRNA_6975-protein|Name=jgi.p|Nanoce1779_2|117835|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MRQISTKQTHCVYEAKILFCTYFGAAIIAFPPLRGQESLNFELGHLLQAA
SHGILRPQITLKCISQTSNKLVPCVDVMLSCARFIFKSFDTPFPPSPSPT
APNGGARQAPGPKNHGQILDQAPVEQAIEHQIRLQGCQGFGMKLLPQEMV
GWRDEAPGGPGRCLRSSSSGGVR*

mRNA from alignment at scaffold_17:580624..581530+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6975 ID=mRNA_6975|Name=jgi.p|Nanoce1779_2|117835|organism=Nannochloropsis oceanica|type=mRNA|length=907bp|location=Sequence derived from alignment at scaffold_17:580624..581530+ (Nannochloropsis oceanica)
GACTAAAGCTATAATATAATTACTGTTTGCTCAGCCCCTGCCTATTGGCT
GGCTGCGACGAATACCTGTGGAGAGGTGGAGGTGCAGAGACGGGGAAGGA
CATCGCATGAGACACAGTTAAGCGGTCGAAACTGCCCTTGGTTTTAGGCA
GAGGGCGTGGCCACATGGACAAAGAGAGTCCCCATTCGGTATCTGCCCCC
TTACCAGAAGGGGGGGATCGCGCCACTAGCTTAGAAATGGAATTTCAGCT
CATGAATGAGACAGATCTCAACAAAGCAAACACATTGTGTTTATGAGGCA
AAAATACTTTTTTGTACGTATTTTGGTGCCGCAATAATTGCCTTCCCCCC
CCTGAGGGGGCAGGAATCGCTCAATTTCGAACTCGGCCACCTCTTGCAGG
CAGCCTCTCACGGCATACTGAGACCCCAAATCACACTAAAATGCATTTCT
CAAACATCTAACAAGCTTGTACCATGTGTAGATGTGATGTTGTCTTGTGC
TAGATTCATTTTCAAGTCCTTTGACACTCCTTTTCCTCCTTCCCCAAGCC
CAACAGCTCCAAATGGTGGCGCGAGGCAAGCGCCGGGGCCCAAAAATCAC
GGGCAAATACTTGACCAGGCCCCTGTGGAACAAGCAATAGAGCACCAGAT
ACGACTCCAAGGCTGCCAAGGATTTGGCATGAAATTACTACCACAAGAAA
TGGTGGGCTGGAGAGATGAAGCGCCGGGCGGACCGGGACGATGTCTCCGC
AGCAGCAGCAGCGGCGGGGTGCGATGATGATGGGCCTGCACTCGTTCCCC
CTCGACATGGCAGCAGCCAAAACCAGGCAGATACAAGCTAAATAGGGTCA
ACTGTTCAGAGCATGCAGCCGTGTGCTCCCTGCTTGCTCTGGGCCTAGGT
CTACTTT

Coding sequence (CDS) from alignment at scaffold_17:580624..581530+

>mRNA_6975 ID=mRNA_6975|Name=jgi.p|Nanoce1779_2|117835|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_17:580624..581530+ (Nannochloropsis oceanica)
ATGAGACAGATCTCAACAAAGCAAACACATTGTGTTTATGAGGCAAAAAT
ACTTTTTTGTACGTATTTTGGTGCCGCAATAATTGCCTTCCCCCCCCTGA
GGGGGCAGGAATCGCTCAATTTCGAACTCGGCCACCTCTTGCAGGCAGCC
TCTCACGGCATACTGAGACCCCAAATCACACTAAAATGCATTTCTCAAAC
ATCTAACAAGCTTGTACCATGTGTAGATGTGATGTTGTCTTGTGCTAGAT
TCATTTTCAAGTCCTTTGACACTCCTTTTCCTCCTTCCCCAAGCCCAACA
GCTCCAAATGGTGGCGCGAGGCAAGCGCCGGGGCCCAAAAATCACGGGCA
AATACTTGACCAGGCCCCTGTGGAACAAGCAATAGAGCACCAGATACGAC
TCCAAGGCTGCCAAGGATTTGGCATGAAATTACTACCACAAGAAATGGTG
GGCTGGAGAGATGAAGCGCCGGGCGGACCGGGACGATGTCTCCGCAGCAG
CAGCAGCGGCGGGGTGCGATGA

Synonyms

Publications