jgi.p|Nanoce1779_2|651230, mRNA_6974 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651230
Unique NamemRNA_6974
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length535
Alignment locationscaffold_17:580028..580562 +

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Properties
Property NameValue
TranscriptId651316
TrackFilteredModels2
ProteinId651230
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:580028..580562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651230gene_6974Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651230mRNA_6974-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6974CDS_6974Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6974 ID=mRNA_6974|Name=jgi.p|Nanoce1779_2|651230|organism=Nannochloropsis oceanica|type=mRNA|length=535bp
TTTTAATATAGGAGGGGTAGGTGGGAGAACGGTGAGGTCGTGAGGGCTAG
GGATGGCACCTGGGCGACGTGCGATGACAGACAGGCCAGCACCTCATTCA
AAGAAAGTCAAAACAACTGCCAGAAATAATGCAACATTTCTCCTTTTGGT
ACTGTTTCTTAATCCATTCACCCCTCCAGCCCTCCATGACGCATTCCCTC
TAACCACCACACACGCGTACCTTGCCTTGTTTTCCCTCCGACGTCTCCAC
GGCATGCTCTTCCTCCACCTTTCTCTTCGCGGTCTTCTCCTTGTCCTCTT
GTATATATGTAGGTGCGATACCCTTCTTCTCCTGCGTCTCATCCTGTCCG
GTTGCGCTCAGGTCCCGCTTCCGCTTCATCTTGCTCTCCTTTTTCCTGTC
CCCGCGACGCTGCTGCACCCGCGCCAAGTATAGTGCGAGCTTGTCTTGCT
TCTTCTCCTTCTCGTCGACGTCGTGCTGCTGCTGCGTCTCACCGCCCCCC
TCCTCCGTGGCCACAAAGCGCTCGATGGCAAACAT
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protein sequence of jgi.p|Nanoce1779_2|651230

>mRNA_6974-protein ID=mRNA_6974-protein|Name=jgi.p|Nanoce1779_2|651230|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MAPGRRAMTDRPAPHSKKVKTTARNNATFLLLVLFLNPFTPPALHDAFPL
TTTHAYLALFSLRRLHGMLFLHLSLRGLLLVLLYICRCDTLLLLRLILSG
CAQVPLPLHLALLFPVPATLLHPRQV*
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mRNA from alignment at scaffold_17:580028..580562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6974 ID=mRNA_6974|Name=jgi.p|Nanoce1779_2|651230|organism=Nannochloropsis oceanica|type=mRNA|length=535bp|location=Sequence derived from alignment at scaffold_17:580028..580562+ (Nannochloropsis oceanica)
TTTTAATATAGGAGGGGTAGGTGGGAGAACGGTGAGGTCGTGAGGGCTAG
GGATGGCACCTGGGCGACGTGCGATGACAGACAGGCCAGCACCTCATTCA
AAGAAAGTCAAAACAACTGCCAGAAATAATGCAACATTTCTCCTTTTGGT
ACTGTTTCTTAATCCATTCACCCCTCCAGCCCTCCATGACGCATTCCCTC
TAACCACCACACACGCGTACCTTGCCTTGTTTTCCCTCCGACGTCTCCAC
GGCATGCTCTTCCTCCACCTTTCTCTTCGCGGTCTTCTCCTTGTCCTCTT
GTATATATGTAGGTGCGATACCCTTCTTCTCCTGCGTCTCATCCTGTCCG
GTTGCGCTCAGGTCCCGCTTCCGCTTCATCTTGCTCTCCTTTTTCCTGTC
CCCGCGACGCTGCTGCACCCGCGCCAAGTATAGTGCGAGCTTGTCTTGCT
TCTTCTCCTTCTCGTCGACGTCGTGCTGCTGCTGCGTCTCACCGCCCCCC
TCCTCCGTGGCCACAAAGCGCTCGATGGCAAACAT
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Coding sequence (CDS) from alignment at scaffold_17:580028..580562+

>mRNA_6974 ID=mRNA_6974|Name=jgi.p|Nanoce1779_2|651230|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_17:580028..580562+ (Nannochloropsis oceanica)
ATGGCACCTGGGCGACGTGCGATGACAGACAGGCCAGCACCTCATTCAAA
GAAAGTCAAAACAACTGCCAGAAATAATGCAACATTTCTCCTTTTGGTAC
TGTTTCTTAATCCATTCACCCCTCCAGCCCTCCATGACGCATTCCCTCTA
ACCACCACACACGCGTACCTTGCCTTGTTTTCCCTCCGACGTCTCCACGG
CATGCTCTTCCTCCACCTTTCTCTTCGCGGTCTTCTCCTTGTCCTCTTGT
ATATATGTAGGTGCGATACCCTTCTTCTCCTGCGTCTCATCCTGTCCGGT
TGCGCTCAGGTCCCGCTTCCGCTTCATCTTGCTCTCCTTTTTCCTGTCCC
CGCGACGCTGCTGCACCCGCGCCAAGTATAG
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Synonyms
Publications