jgi.p|Nanoce1779_2|557964, mRNA_6971 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557964
Unique NamemRNA_6971
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_17:568783..570291 -

Link to JBrowse

Properties
Property NameValue
TranscriptId558050
TrackFilteredModels2
ProteinId557964
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:568783..570291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557964gene_6971Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557964mRNA_6971-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6971CDS_6971Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6971 ID=mRNA_6971|Name=jgi.p|Nanoce1779_2|557964|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
GTCGCGGCAGCGCAACGGAAAGCGGGTGTGGGTGCCGGTGCCATTGCATC
ACCCGCTGTTCTTAGCATGCCACGCGCTGGTCTGGCCATTATGCGTGTTG
TGTTTGTGGCCTTCAAGCGCATTGGGGCCATGAATGTGGATTTTAATTTG
CCCATCTCTCCCGGGGATCGCTTTGGGTCTTCCGTGTCGGTGCTGTTGCC
GGCCGGGGATTTGGACCGCAACTGGAACACACTGAAGGTAGCGGTGGGTG
CCCCAGGTGATCACACGTACATGAAGCGACAGGGAGCGGTATTTATCCTG
TCGCTCGCCAATTTTGGAACTACGCTGATCAACTATCATAAGATTATTCC
CGGGGAAGGCGTCCTGGCGGGACAGGCTTGCAAGTACTCGAGCTTTGGCA
CGGCAGTGGCAACCCTAGGCGACTTGGACACTGATGGATTTTCGGACATT
GCTGTGGGCGCCCCGTTTCAGGAAGAGACGGGAGGACGCGAGGCCTGCAT
AGCCTCAGGTGCCATTTACATTCTATTTATGAATATCGATGGTACGGTCA
AATACCACCGCAAGATCAGCGCGCGTAGCGGGAATCTGCTGGTAGGGCCG
CAGCCAGGGGATCGTTTTGGGGCATCAGTGGCGTTCGTCGGGCACCGCAA
TGGATGCACCGTGATCGCGGTGGGCGCACCCTTCGCGGACGGTGCAGGTC
ACGAGGTTGGGGCCGTGTATCTTTTGGAGCTACTGCAAACGGGTGACGTG
AAACGATTCGAGATTCTGAGTTCTGCCTATGTACCTGCCCCCCCAGGTTC
GGCCCGGTCGCCGTACATATATATGAGTGCGCCTTTGGCCTCACACGACT
ACTTCGGTAGCGCTGTGGCAGCCATGGACGTGGACAGAGACGGAGGCTGG
GACTTGTTGGTCGGATCGCGGGGCCTGAATCAGCGTACGCAGGATGAAGG
GGCCTCATTTGTGTGCTATATGGATGGGGTTCGAGGGGGGTTGACGGGGT
GGGAGCAGGTAGCGAGCCAGAGTGGCGTTTTGGTACCCGTGCAACCAGGG
GAGCAGTTTGGAGCCGCAATTTCCGTTTTAGATGATCCCAGCCGCAACCC
TTCTAGCTTAATCTTTGTAGGTGCGCCCGGTGGGTGTATGGATGCAGTGG
GTGGGGCGGTGTACGTGCTACGGATCCAGCCCATTGGAGGGTAGATTTGT
AGGGGACGGTGGGAGTATAGGGCGTATGAGCTGGAAAAATATGGGCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|557964

>mRNA_6971-protein ID=mRNA_6971-protein|Name=jgi.p|Nanoce1779_2|557964|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MPRAGLAIMRVVFVAFKRIGAMNVDFNLPISPGDRFGSSVSVLLPAGDLD
RNWNTLKVAVGAPGDHTYMKRQGAVFILSLANFGTTLINYHKIIPGEGVL
AGQACKYSSFGTAVATLGDLDTDGFSDIAVGAPFQEETGGREACIASGAI
YILFMNIDGTVKYHRKISARSGNLLVGPQPGDRFGASVAFVGHRNGCTVI
AVGAPFADGAGHEVGAVYLLELLQTGDVKRFEILSSAYVPAPPGSARSPY
IYMSAPLASHDYFGSAVAAMDVDRDGGWDLLVGSRGLNQRTQDEGASFVC
YMDGVRGGLTGWEQVASQSGVLVPVQPGEQFGAAISVLDDPSRNPSSLIF
VGAPGGCMDAVGGAVYVLRIQPIGG*
back to top

mRNA from alignment at scaffold_17:568783..570291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6971 ID=mRNA_6971|Name=jgi.p|Nanoce1779_2|557964|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at scaffold_17:568783..570291- (Nannochloropsis oceanica)
GTCGCGGCAGCGCAACGGAAAGCGGGTGTGGGTGCCGGTGCCATTGCATC
ACCCGCTGTTCTTAGCATGCCACGCGCTGGTCTGGCCATTATGCGTGTTG
TGTTTGTGGCCTTCAAGCGCATTGGGGCCATGAATGTGGATTTTAATTTG
CCCATCTCTCCCGGGGATCGCTTTGGGTCTTCCGTGTCGGTGCTGTTGCC
GGCCGGGGATTTGGACCGCAACTGGAACACACTGAAGGTAGCGGTGGGTG
CCCCAGGTGATCACACGTACATGAAGCGACAGGGAGCGGTATTTATCCTG
TCGCTCGCCAATTTTGGAACTACGCTGATCAACTATCATAAGATTATTCC
CGGGGAAGGCGTCCTGGCGGGACAGGCTTGCAAGTACTCGAGCTTTGGCA
CGGCAGTGGCAACCCTAGGCGACTTGGACACTGATGGATTTTCGGACATT
GCTGTGGGCGCCCCGTTTCAGGAAGAGACGGGAGTGGTCTATATTTTGTT
CTTGGCCTTTGGGGGCTCGGTCGCAAAGTACATAAAGATCGGTGGTAGTG
ACAAATTCGGGGGAGCTGTGTGGGGAAATCCGCATTTTGGAAATCCGCAT
TATCCGTCGCCCTTGGCCATTGGGGATGAATTTGGCTGCTCTATCGCCAA
CATTGAGGATCTGAACGGGGATGGCGTGGCAGACTTGGTCGTGGGTGCCT
GTGGAGACACGGACTCGAGAAAAGGGTTTGCCCCCGGCGGCAAGGGACGC
GAGGCCTGCATAGCCTCAGGTGCCATTTACATTCTATTTATGAATATCGA
TGGTACGGTCAAATACCACCGCAAGATCAGCGCGCGTAGCGGGAATCTGC
TGGTAGGGCCGCAGCCAGGGGATCGTTTTGGGGCATCAGTGGCGTTCGTC
GGGCACCGCAATGGATGCACCGTGATCGCGGTGGGCGCACCCTTCGCGGA
CGGTGCAGGTCACGAGGTTGGGGCCGTGTATCTTTTGGAGCTACTGCAAA
CGGGTGACGTGAAACGATTCGAGATTCTGAGTTCTGCCTATGTACCTGCC
CCCCCAGGTTCGGCCCGGTCGCCGTACATATATATGAGTGCGCCTTTGGC
CTCACACGACTACTTCGGTAGCGCTGTGGCAGCCATGGACGTGGACAGAG
ACGGAGGCTGGGACTTGTTGGTCGGATCGCGGGGCCTGAATCAGCGTACG
CAGGATGAAGGGGCCTCATTTGTGTGCTATATGGATGGGGTTCGAGGGGG
GTTGACGGGGTGGGAGCAGGTAGCGAGCCAGAGTGGCGTTTTGGTACCCG
TGCAACCAGGGGAGCAGTTTGGAGCCGCAATTTCCGTTTTAGATGATCCC
AGCCGCAACCCTTCTAGCTTAATCTTTGTAGGTGCGCCCGGTGGGTGTAT
GGATGCAGTGGGTGGGGCGGTGTACGTGCTACGGATCCAGCCCATTGGAG
GGTAGATTTGTAGGGGACGGTGGGAGTATAGGGCGTATGAGCTGGAAAAA
TATGGGCTG
back to top

Coding sequence (CDS) from alignment at scaffold_17:568783..570291-

>mRNA_6971 ID=mRNA_6971|Name=jgi.p|Nanoce1779_2|557964|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_17:568783..570291- (Nannochloropsis oceanica)
GGACGCGAGGCCTGCATAGCCTCAGGTGCCATTTACATTCTATTTATGAA
TATCGATGGTACGGTCAAATACCACCGCAAGATCAGCGCGCGTAGCGGGA
ATCTGCTGGTAGGGCCGCAGCCAGGGGATCGTTTTGGGGCATCAGTGGCG
TTCGTCGGGCACCGCAATGGATGCACCGTGATCGCGGTGGGCGCACCCTT
CGCGGACGGTGCAGGTCACGAGGTTGGGGCCGTGTATCTTTTGGAGCTAC
TGCAAACGGGTGACGTGAAACGATTCGAGATTCTGAGTTCTGCCTATGTA
CCTGCCCCCCCAGGTTCGGCCCGGTCGCCGTACATATATATGAGTGCGCC
TTTGGCCTCACACGACTACTTCGGTAGCGCTGTGGCAGCCATGGACGTGG
ACAGAGACGGAGGCTGGGACTTGTTGGTCGGATCGCGGGGCCTGAATCAG
CGTACGCAGGATGAAGGGGCCTCATTTGTGTGCTATATGGATGGGGTTCG
AGGGGGGTTGACGGGGTGGGAGCAGGTAGCGAGCCAGAGTGGCGTTTTGG
TACCCGTGCAACCAGGGGAGCAGTTTGGAGCCGCAATTTCCGTTTTAGAT
GATCCCAGCCGCAACCCTTCTAGCTTAATCTTTGTAGGTGCGCCCGGTGG
GTGTATGGATGCAGTGGGTGGGGCGGTGTACGTGCTACGGATCCAGCCCA
TTGGAGGGTAGATGCCACGCGCTGGTCTGGCCATTATGCGTGTTGTGTTT
GTGGCCTTCAAGCGCATTGGGGCCATGAATGTGGATTTTAATTTGCCCAT
CTCTCCCGGGGATCGCTTTGGGTCTTCCGTGTCGGTGCTGTTGCCGGCCG
GGGATTTGGACCGCAACTGGAACACACTGAAGGTAGCGGTGGGTGCCCCA
GGTGATCACACGTACATGAAGCGACAGGGAGCGGTATTTATCCTGTCGCT
CGCCAATTTTGGAACTACGCTGATCAACTATCATAAGATTATTCCCGGGG
AAGGCGTCCTGGCGGGACAGGCTTGCAAGTACTCGAGCTTTGGCACGGCA
GTGGCAACCCTAGGCGACTTGGACACTGATGGATTTTCGGACATTGCTGT
GGGCGCCCCGTTTCAGGAAGAGACGGGAGGACGCGAGGCCTGCATAGCCT
CAGGTGCCATTTACATTCTATTTATGAATATCGATGGTACGGTCAAATAC
CACCGCAAGATCAGCGCGCGTAGCGGGAATCTGCTGGTAGGGCCGCAGCC
AGGGGATCGTTTTGGGGCATCAGTGGCGTTCGTCGGGCACCGCAATGGAT
GCACCGTGATCGCGGTGGGCGCACCCTTCGCGGACGGTGCAGGTCACGAG
GTTGGGGCCGTGTATCTTTTGGAGCTACTGCAAACGGGTGACGTGAAACG
ATTCGAGATTCTGAGTTCTGCCTATGTACCTGCCCCCCCAGGTTCGGCCC
GGTCGCCGTACATATATATGAGTGCGCCTTTGGCCTCACACGACTACTTC
GGTAGCGCTGTGGCAGCCATGGACGTGGACAGAGACGGAGGCTGGGACTT
GTTGGTCGGATCGCGGGGCCTGAATCAGCGTACGCAGGATGAAGGGGCCT
CATTTGTGTGCTATATGGATGGGGTTCGAGGGGGGTTGACGGGGTGGGAG
CAGGTAGCGAGCCAGAGTGGCGTTTTGGTACCCGTGCAACCAGGGGAGCA
GTTTGGAGCCGCAATTTCCGTTTTAGATGATCCCAGCCGCAACCCTTCTA
GCTTAATCTTTGTAGGTGCGCCCGGTGGGTGTATGGATGCAGTGGGTGGG
GCGGTGTACGTGCTACGGATCCAGCCCATTGGAGGGTAGATGCCACGCGC
TGGTCTGGCCATTATGCGTGTTGTGTTTGTGGCCTTCAAGCGCATTGGGG
CCATGAATGTGGATTTTAATTTGCCCATCTCTCCCGGGGATCGCTTTGGG
TCTTCCGTGTCGGTGCTGTTGCCGGCCGGGGATTTGGACCGCAACTGGAA
CACACTGAAGGTAGCGGTGGGTGCCCCAGGTGATCACACGTACATGAAGC
GACAGGGAGCGGTATTTATCCTGTCGCTCGCCAATTTTGGAACTACGCTG
ATCAACTATCATAAGATTATTCCCGGGGAAGGCGTCCTGGCGGGACAGGC
TTGCAAGTACTCGAGCTTTGGCACGGCAGTGGCAACCCTAGGCGACTTGG
ACACTGATGGATTTTCGGACATTGCTGTGGGCGCCCCGTTTCAGGAAGAG
ACGGGA
back to top
Synonyms
Publications