jgi.p|Nanoce1779_2|596961, mRNA_6969 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596961
Unique Name	mRNA_6969
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2271
Alignment location	scaffold_17:561585..563855 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	597047
Track	FilteredModels2
ProteinId	596961

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:561585..563855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596961	gene_6969	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596961	mRNA_6969-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6969	CDS_6969	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:561585..563855+
coding sequence from alignment at scaffold_17:561585..563855+

mRNA sequence

>mRNA_6969 ID=mRNA_6969|Name=jgi.p|Nanoce1779_2|596961|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp
AATAATAACAACAACAGCAACGGCAAGACTAACCATGACAAGACTTCCAA
AAGCTCAAGAAGCTCCTCCTCCTTCTCCCCCTCCTTTTCCCCTCCCACGG
GGAAGGATACGCATCGGCACGTGACCGTCTCTCGGGCCATCGCCATCTTG
GAGCAAAGCATCGAATGGGGCCTGGTGGGTCGACGCGCCATTTTCCGCCG
CGTCTTGCGGATGGTGGAAGCTGAGAGGGGTCGAAATGAAATGATTGCAT
ACGCAGACTATCTGTTTAAGTCGGGTCGATTTAGGCGATTCCCTGAGGAA
GGGCGGCTGTTGATGGTGGAGGCCCTGTGTGACGTTGGTTTATTCAGGCA
TGCTCTGCACATACTGAGAGAAGCGGCGCCTGCCGATCTAGGAGAGAGGA
AGAGGTTGTATGGTTTAGTCATGGCCGCGGCCTCCGAGGGTGGGGATCAT
GAGTTAGTTTTTTCTTTGCACGACGAGGTCCTTACCCACATGGGCCCCGG
CCCGGCGGCGAATCGCGATGTGTACCAAGCGGTGTTGTTGTCCTTGCGAG
CTGTAGGGCTAAACACGGGTCCACGCATGGCGGCCAAGGCGGCAGCTGAG
GAACACTCGCCTGAAGCTAGATGGCAAAGACTGGTGGCTGAGATGCTCGC
GGCATGTACGGGAGGAGGGGAGGGAGGGATCTCGCAGTCGTCTTCAGCGG
CTACCACAGGGGGTAGCAGTAAGAAGGGCGGGCCATTGCTGAGAGGAGGT
AATGAAGTGCTAGCGGCATGTGTGGCAGCAAGGGAGTGGGAGCTGGGGAC
GCGGGCGTTGATTGAAGTTGGAAAACGGAGGTTGGCATTTGATGAACAGA
CGTACCAACAAGCGATTGCGATTTTGGCAGAAAGGAGGGAAGGGCCAAGG
GCAGTGCAGTTGTTGAGAGAGATGCAGGGGAGAGGGTTTCAGGCGCGGAC
ATCGGAGTATAACCACGCCATGTTTGCATGCCAGGATAAGAATTGGGCAA
CAGCGCTCGAATTGTTTAGAGAGGTAGAGTCAGGGGCGGCAGGGGTGAGA
ATGGACACGGGCACCATAATGGCGGCACTTGGCGCTTGTCGTATTGGGAA
ACAATGGCAATTGGCAGCGTCGATTTTTGATTCTGCGCGCTCTCAGGAGG
TGGAGCCGAGCTTGGTCTTGTTTAATGCGGTGTTGGGCGTGTATGCGACA
GCGCAGCAGACGGGCAAGGTATTGGAAACCTTGGAAGAGATGCGATTTCG
TGGTGTAAGACCTGATGAGTTTACTTATAATACAGCAATTGGGGCATTTG
CAAAGGTCGGGGACTTTAGGCAGGCCGGCCAGTGGTTGAGTGTCATGAGC
TGGGAAGGTGTGTCGGCCTCTACAGTGACCTATAACTGTGTACTGGATGC
GTGCGCCAACGGTGGGAACCCTCAAAAGGCCGCGGAACTTTTCCAAGAGA
TGAAAGACAGGAAAGTAGGGGTAGATCACGTGACCTACGGCTCGCTTATT
CATGCCTTTGCCAAGGGTGGGCAGTGGGAAGCGGCTCTGAAGTACTTGGA
GGAGATGCGCCAGCCCAGTAGCGGAGTAAAACCAAATAATTTTGTCTATT
GTAGTGCCATGTCGGCCTGTAACCGCGGTAATGAGCCCGCGCTCGCCTTG
ACCCTTTTGGATCAGATGCGTATTCAAGACAATGTAGCTCCCGACCAGTA
TACGATTAATGAGGCTCTGAATGCATGTGCCAAGGGAGGGATGTGTGAGC
GTGCCTTGGGCATCTTGGAGGTCGCGAGAGAGGGAGGGGTGGCTCTGGAT
GTCATATCATACAACAAGGCATTGCAGGCGTGCATTTCAACGAGACACTG
GCCAGAGGCACAGGACTTGATGAGGCAGATGGCGGCGGAACGAGTGGCAC
CTGATAGGACGACGCATAGCTTGGTGGAGGAAGTGTTCCTGCACGGCCCG
CCCTCGGCCCCGGATGCGGCATTGTTGGAGGGAGAGAAGGAGGAGGAAGA
GGAACAGGGGGAGGGGGAAATAGGAAGCCGATTGAGTGATGGAGATGTAG
AGGGAGGAGGAGGGGGCAGAGGAGGGATCGGAGACCCTCCACCGGTTGAC
TTGTCTACTGCTAGTACTTGCAGCAGTAGCACCTCGGCAGTGACAGCGAG
ATGAGAAGGCGGAATTTTGGAGCCTAATTGATCGAATGAAGAAGCGGGAA
AGCACAGAGAAATATGATTATACGCACTCCTGAGGAAGAAAAACGAATTT
ATTTGCTTTTCTACATTACCT

protein sequence of jgi.p|Nanoce1779_2|596961

>mRNA_6969-protein ID=mRNA_6969-protein|Name=jgi.p|Nanoce1779_2|596961|organism=Nannochloropsis oceanica|type=polypeptide|length=648bp
MVEAERGRNEMIAYADYLFKSGRFRRFPEEGRLLMVEALCDVGLFRHALH
ILREAAPADLGERKRLYGLVMAAASEGGDHELVFSLHDEVLTHMGPGPAA
NRDVYQAVLLSLRAVGLNTGPRMAAKAAAEEHSPEARWQRLVAEMLAACT
GGGEGGISQSSSAATTGGSSKKGGPLLRGGNEVLAACVAAREWELGTRAL
IEVGKRRLAFDEQTYQQAIAILAERREGPRAVQLLREMQGRGFQARTSEY
NHAMFACQDKNWATALELFREVESGAAGVRMDTGTIMAALGACRIGKQWQ
LAASIFDSARSQEVEPSLVLFNAVLGVYATAQQTGKVLETLEEMRFRGVR
PDEFTYNTAIGAFAKVGDFRQAGQWLSVMSWEGVSASTVTYNCVLDACAN
GGNPQKAAELFQEMKDRKVGVDHVTYGSLIHAFAKGGQWEAALKYLEEMR
QPSSGVKPNNFVYCSAMSACNRGNEPALALTLLDQMRIQDNVAPDQYTIN
EALNACAKGGMCERALGILEVAREGGVALDVISYNKALQACISTRHWPEA
QDLMRQMAAERVAPDRTTHSLVEEVFLHGPPSAPDAALLEGEKEEEEEQG
EGEIGSRLSDGDVEGGGGGRGGIGDPPPVDLSTASTCSSSTSAVTAR*

mRNA from alignment at scaffold_17:561585..563855+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6969 ID=mRNA_6969|Name=jgi.p|Nanoce1779_2|596961|organism=Nannochloropsis oceanica|type=mRNA|length=2271bp|location=Sequence derived from alignment at scaffold_17:561585..563855+ (Nannochloropsis oceanica)
AATAATAACAACAACAGCAACGGCAAGACTAACCATGACAAGACTTCCAA
AAGCTCAAGAAGCTCCTCCTCCTTCTCCCCCTCCTTTTCCCCTCCCACGG
GGAAGGATACGCATCGGCACGTGACCGTCTCTCGGGCCATCGCCATCTTG
GAGCAAAGCATCGAATGGGGCCTGGTGGGTCGACGCGCCATTTTCCGCCG
CGTCTTGCGGATGGTGGAAGCTGAGAGGGGTCGAAATGAAATGATTGCAT
ACGCAGACTATCTGTTTAAGTCGGGTCGATTTAGGCGATTCCCTGAGGAA
GGGCGGCTGTTGATGGTGGAGGCCCTGTGTGACGTTGGTTTATTCAGGCA
TGCTCTGCACATACTGAGAGAAGCGGCGCCTGCCGATCTAGGAGAGAGGA
AGAGGTTGTATGGTTTAGTCATGGCCGCGGCCTCCGAGGGTGGGGATCAT
GAGTTAGTTTTTTCTTTGCACGACGAGGTCCTTACCCACATGGGCCCCGG
CCCGGCGGCGAATCGCGATGTGTACCAAGCGGTGTTGTTGTCCTTGCGAG
CTGTAGGGCTAAACACGGGTCCACGCATGGCGGCCAAGGCGGCAGCTGAG
GAACACTCGCCTGAAGCTAGATGGCAAAGACTGGTGGCTGAGATGCTCGC
GGCATGTACGGGAGGAGGGGAGGGAGGGATCTCGCAGTCGTCTTCAGCGG
CTACCACAGGGGGTAGCAGTAAGAAGGGCGGGCCATTGCTGAGAGGAGGT
AATGAAGTGCTAGCGGCATGTGTGGCAGCAAGGGAGTGGGAGCTGGGGAC
GCGGGCGTTGATTGAAGTTGGAAAACGGAGGTTGGCATTTGATGAACAGA
CGTACCAACAAGCGATTGCGATTTTGGCAGAAAGGAGGGAAGGGCCAAGG
GCAGTGCAGTTGTTGAGAGAGATGCAGGGGAGAGGGTTTCAGGCGCGGAC
ATCGGAGTATAACCACGCCATGTTTGCATGCCAGGATAAGAATTGGGCAA
CAGCGCTCGAATTGTTTAGAGAGGTAGAGTCAGGGGCGGCAGGGGTGAGA
ATGGACACGGGCACCATAATGGCGGCACTTGGCGCTTGTCGTATTGGGAA
ACAATGGCAATTGGCAGCGTCGATTTTTGATTCTGCGCGCTCTCAGGAGG
TGGAGCCGAGCTTGGTCTTGTTTAATGCGGTGTTGGGCGTGTATGCGACA
GCGCAGCAGACGGGCAAGGTATTGGAAACCTTGGAAGAGATGCGATTTCG
TGGTGTAAGACCTGATGAGTTTACTTATAATACAGCAATTGGGGCATTTG
CAAAGGTCGGGGACTTTAGGCAGGCCGGCCAGTGGTTGAGTGTCATGAGC
TGGGAAGGTGTGTCGGCCTCTACAGTGACCTATAACTGTGTACTGGATGC
GTGCGCCAACGGTGGGAACCCTCAAAAGGCCGCGGAACTTTTCCAAGAGA
TGAAAGACAGGAAAGTAGGGGTAGATCACGTGACCTACGGCTCGCTTATT
CATGCCTTTGCCAAGGGTGGGCAGTGGGAAGCGGCTCTGAAGTACTTGGA
GGAGATGCGCCAGCCCAGTAGCGGAGTAAAACCAAATAATTTTGTCTATT
GTAGTGCCATGTCGGCCTGTAACCGCGGTAATGAGCCCGCGCTCGCCTTG
ACCCTTTTGGATCAGATGCGTATTCAAGACAATGTAGCTCCCGACCAGTA
TACGATTAATGAGGCTCTGAATGCATGTGCCAAGGGAGGGATGTGTGAGC
GTGCCTTGGGCATCTTGGAGGTCGCGAGAGAGGGAGGGGTGGCTCTGGAT
GTCATATCATACAACAAGGCATTGCAGGCGTGCATTTCAACGAGACACTG
GCCAGAGGCACAGGACTTGATGAGGCAGATGGCGGCGGAACGAGTGGCAC
CTGATAGGACGACGCATAGCTTGGTGGAGGAAGTGTTCCTGCACGGCCCG
CCCTCGGCCCCGGATGCGGCATTGTTGGAGGGAGAGAAGGAGGAGGAAGA
GGAACAGGGGGAGGGGGAAATAGGAAGCCGATTGAGTGATGGAGATGTAG
AGGGAGGAGGAGGGGGCAGAGGAGGGATCGGAGACCCTCCACCGGTTGAC
TTGTCTACTGCTAGTACTTGCAGCAGTAGCACCTCGGCAGTGACAGCGAG
ATGAGAAGGCGGAATTTTGGAGCCTAATTGATCGAATGAAGAAGCGGGAA
AGCACAGAGAAATATGATTATACGCACTCCTGAGGAAGAAAAACGAATTT
ATTTGCTTTTCTACATTACCT

Coding sequence (CDS) from alignment at scaffold_17:561585..563855+

>mRNA_6969 ID=mRNA_6969|Name=jgi.p|Nanoce1779_2|596961|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_17:561585..563855+ (Nannochloropsis oceanica)
ATGGTGGAAGCTGAGAGGGGTCGAAATGAAATGATTGCATACGCAGACTA
TCTGTTTAAGTCGGGTCGATTTAGGCGATTCCCTGAGGAAGGGCGGCTGT
TGATGGTGGAGGCCCTGTGTGACGTTGGTTTATTCAGGCATGCTCTGCAC
ATACTGAGAGAAGCGGCGCCTGCCGATCTAGGAGAGAGGAAGAGGTTGTA
TGGTTTAGTCATGGCCGCGGCCTCCGAGGGTGGGGATCATGAGTTAGTTT
TTTCTTTGCACGACGAGGTCCTTACCCACATGGGCCCCGGCCCGGCGGCG
AATCGCGATGTGTACCAAGCGGTGTTGTTGTCCTTGCGAGCTGTAGGGCT
AAACACGGGTCCACGCATGGCGGCCAAGGCGGCAGCTGAGGAACACTCGC
CTGAAGCTAGATGGCAAAGACTGGTGGCTGAGATGCTCGCGGCATGTACG
GGAGGAGGGGAGGGAGGGATCTCGCAGTCGTCTTCAGCGGCTACCACAGG
GGGTAGCAGTAAGAAGGGCGGGCCATTGCTGAGAGGAGGTAATGAAGTGC
TAGCGGCATGTGTGGCAGCAAGGGAGTGGGAGCTGGGGACGCGGGCGTTG
ATTGAAGTTGGAAAACGGAGGTTGGCATTTGATGAACAGACGTACCAACA
AGCGATTGCGATTTTGGCAGAAAGGAGGGAAGGGCCAAGGGCAGTGCAGT
TGTTGAGAGAGATGCAGGGGAGAGGGTTTCAGGCGCGGACATCGGAGTAT
AACCACGCCATGTTTGCATGCCAGGATAAGAATTGGGCAACAGCGCTCGA
ATTGTTTAGAGAGGTAGAGTCAGGGGCGGCAGGGGTGAGAATGGACACGG
GCACCATAATGGCGGCACTTGGCGCTTGTCGTATTGGGAAACAATGGCAA
TTGGCAGCGTCGATTTTTGATTCTGCGCGCTCTCAGGAGGTGGAGCCGAG
CTTGGTCTTGTTTAATGCGGTGTTGGGCGTGTATGCGACAGCGCAGCAGA
CGGGCAAGGTATTGGAAACCTTGGAAGAGATGCGATTTCGTGGTGTAAGA
CCTGATGAGTTTACTTATAATACAGCAATTGGGGCATTTGCAAAGGTCGG
GGACTTTAGGCAGGCCGGCCAGTGGTTGAGTGTCATGAGCTGGGAAGGTG
TGTCGGCCTCTACAGTGACCTATAACTGTGTACTGGATGCGTGCGCCAAC
GGTGGGAACCCTCAAAAGGCCGCGGAACTTTTCCAAGAGATGAAAGACAG
GAAAGTAGGGGTAGATCACGTGACCTACGGCTCGCTTATTCATGCCTTTG
CCAAGGGTGGGCAGTGGGAAGCGGCTCTGAAGTACTTGGAGGAGATGCGC
CAGCCCAGTAGCGGAGTAAAACCAAATAATTTTGTCTATTGTAGTGCCAT
GTCGGCCTGTAACCGCGGTAATGAGCCCGCGCTCGCCTTGACCCTTTTGG
ATCAGATGCGTATTCAAGACAATGTAGCTCCCGACCAGTATACGATTAAT
GAGGCTCTGAATGCATGTGCCAAGGGAGGGATGTGTGAGCGTGCCTTGGG
CATCTTGGAGGTCGCGAGAGAGGGAGGGGTGGCTCTGGATGTCATATCAT
ACAACAAGGCATTGCAGGCGTGCATTTCAACGAGACACTGGCCAGAGGCA
CAGGACTTGATGAGGCAGATGGCGGCGGAACGAGTGGCACCTGATAGGAC
GACGCATAGCTTGGTGGAGGAAGTGTTCCTGCACGGCCCGCCCTCGGCCC
CGGATGCGGCATTGTTGGAGGGAGAGAAGGAGGAGGAAGAGGAACAGGGG
GAGGGGGAAATAGGAAGCCGATTGAGTGATGGAGATGTAGAGGGAGGAGG
AGGGGGCAGAGGAGGGATCGGAGACCCTCCACCGGTTGACTTGTCTACTG
CTAGTACTTGCAGCAGTAGCACCTCGGCAGTGACAGCGAGATGA

Synonyms

Publications