jgi.p|Nanoce1779_2|651216, mRNA_6968 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|651216
Unique Name	mRNA_6968
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1466
Alignment location	scaffold_17:558481..560013 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	651302
Track	FilteredModels2
ProteinId	651216

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:558481..560013 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651216	gene_6968	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|651216	mRNA_6968-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6968	CDS_6968	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:558481..560013+
coding sequence from alignment at scaffold_17:558481..560013+

mRNA sequence

>mRNA_6968 ID=mRNA_6968|Name=jgi.p|Nanoce1779_2|651216|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp
GATATTTCCTCGAGTTGAACGAAAATTCCTGATTTCAAGGTCTAATAGAA
GCCTCAGACATACACAAAGACTACAGGCGTGGTCGCGTAATTTATACTTG
CGCGCAGCGTATTGTTTATTGCTTTGATTTCCTCCCCTGTTTCAGCCTCC
CGGTCCCCAACTATATAGCATCATCTAGCATGACGTGAAACACCAACAAG
GATCGACCTTAAGCCATGTCGACCTGTCTTTGCTGCTACTGCTACTAGCC
AAGCTCATCTTCCTTCTCCAAACCCTTTTGAACAACTATACAGGTGCACC
ACGGAGGAGAGTCAGAGTGAGGTGTGCTTCCTTGTGGACGTCGTCCTCCT
CCTTTTGGGCGGCCTGGAGTCCAGGCTACGATGATGTTGCAGGCGCAGCC
TCAGGTTGCTTCCGCGTCCACCGCTGCTGCTCCTCCCGATGAATCGACCG
CCAGAATAAGAAGAGGTAGGAGGCGGAGGAGAAGACCACTAGGATCATCA
TCAGTGTCGCTGTCATCATCGTGGGGCGGCTTACGGATGGGTTTCACGGC
TATCCTTGCAGTGAGCGTATTTGGAAGGCGGGGCACCCAGGCCTTCCTCC
TCCCGGCCCCCCTGTGGGGTCCAACAACAAGGAGCAGCAGCAGCAGCAGC
AGCAGCAGTGGTAGCAGTACTAGCAGCACCAGCATCCAAAACAGGGATAC
CAGCACCTGCAGCAATACCGGGATTGCTTCGTGCTCCTCCCCCATCTCCC
TTGTCTCAATAGTACCCTCCACCCGCGCCCTACCCTCCTCCTCCTTCCTC
CTCTACGCCACCTCCTCGACCTCCCCCCCTTCAAGCAAGACCAATCCGCG
CGAGCGTCTCTACAATCTCGTCAATGACTTACACGCCCATCGCGACGCCG
GGCATAAAGATGGCGTCCTCTCCACCGTCCAATGCATTTTAGAAGACCGT
ACCCTCGACCTCACCCCCAAGCATTGCACCATGCTTGTCTCTGCCCTTGG
TGCAGTAGGACTGTCAAGAGAGACGGTGACGGCTTTGAAGGAGATGAAAG
GTAGAGGTTTATCGCTCAATAAAGTGACGTATGGCGCTGTGGTGAATGCT
TGCGCCTACGGGAAGGACATGGCGGCTGCCAGAAGGGTGATGGAAGAGAT
GCGCAGCGCGGGTGTCATGCCCGATGCCGTCGAGTACAGCAACCTCCTCC
ATGGCTACAAGCGACTAAATGCCACAGAGGAGTGTCTGGCGTGCTTTGAC
GAGATGTTATTTTATGGCGTCAAGCCCTCCACGCGGACGTACGACGGGGT
CTTGGGTGCCTTGGCCGCAGCCGAGCGGTGGCAGGTGTTCAAGATGTACC
TCGACAGAATGCAAAGAGAAGGAGTGCGTCTCTCTGCAATTACGTATGGG
TGGGCCGTGAGGGGGGCGGAGCGTGCGCAAGACTGGGGAGAGCGCTCAAG
GCGTCGCTGGCATTGA

protein sequence of jgi.p|Nanoce1779_2|651216

>mRNA_6968-protein ID=mRNA_6968-protein|Name=jgi.p|Nanoce1779_2|651216|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MMLQAQPQVASASTAAAPPDESTARIRRGRRRRRRPLGSSSVSLSSSWGG
LRMGFTAILAVSVFGRRGTQAFLLPAPLWGPTTRSSSSSSSSSGSSTSST
SIQNRDTSTCSNTGIASCSSPISLVSIVPSTRALPSSSFLLYATSSTSPP
SSKTNPRERLYNLVNDLHAHRDAGHKDGVLSTVQCILEDRTLDLTPKHCT
MLVSALGAVGLSRETVTALKEMKGRGLSLNKVTYGAVVNACAYGKDMAAA
RRVMEEMRSAGVMPDAVEYSNLLHGYKRLNATEECLACFDEMLFYGVKPS
TRTYDGVLGALAAAERWQVFKMYLDRMQREGVRLSAITYGWAVRGAERAQ
DWGERSRRRWH*

mRNA from alignment at scaffold_17:558481..560013+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6968 ID=mRNA_6968|Name=jgi.p|Nanoce1779_2|651216|organism=Nannochloropsis oceanica|type=mRNA|length=1533bp|location=Sequence derived from alignment at scaffold_17:558481..560013+ (Nannochloropsis oceanica)
GATATTTCCTCGAGTTGAACGAAAATTCCTGATTTCAAGGTCTAATAGAA
GCCTCAGACATACACAAAGACTACAGGCGTGGTCGCGTAATTTATACTTG
CGCGCAGCGTATTGTTTATTGCTTTGATTTCCTCCCCTGTTTCAGCCTCC
CGGTCCCCAACTATATAGCATCATCTAGCATGACGTGAAACACCAACAAG
GATCGACCTTAAGCCATGTCGACCTGTCTTTGCTGCTACTGCTACTAGCC
AAGCTCATCTTCCTTCTCCAAACCCTTTTGAACAACTATACAGGTGCACC
ACGGAGGAGAGTCAGAGTGAGGTGTGCTTCCTTGTGGACGTCGTCCTCCT
CCTTTTGGGCGGCCTGGAGTCCAGGCTACGATGATGTTGCAGGCGCAGCC
TCAGGTTGCTTCCGCGTCCACCGCTGCTGCTCCTCCCGATGAATCGACCG
CCAGAATAAGAAGAGGTAGGAGGCGGAGGAGAAGACCACTAGGATCATCA
TCAGTGTCGCTGTCATCATCGTGGGGCGGCTTACGGATGGGTTTCACGGC
TATCCTTGCAGTGAGCGTATTTGGAAGGCGGGGCACCCAGGCCTTCCTCC
TCCCGGCCCCCCTGTGGGGTCCAACAACAAGGAGCAGCAGCAGCAGCAGC
AGCAGCAGTGGTAGCAGTACTAGCAGCACCAGCATCCAAAACAGGGATAC
CAGCACCTGCAGCAATACCGGGATTGCTTCGTGCTCCTCCCCCATCTCCC
TTGTCTCAATAGTACCCTCCACCCGCGCCCTACCCTCCTCCTCCTTCCTC
CTCTACGCCACCTCCTCGACCTCCCCCCCTTCAAGCAAGACCAATCCGCG
CGAGCGTCTCTACAATCTCGTCAATGACTTACACGCCCATCGCGACGCCG
GGCATAAAGATGGCGTCCTCTCCACCGTCCAATGCATTTTAGAAGACCGT
ACCCTCGACCTCACCCCCAAGCATTGCACCATGCTTGTCTCTGCCCTTGG
TGCAGTAGGACTGTCAAGAGAGACGGTGACGGCTTTGAAGGAGATGAAAG
GTAGAGGTTTATCGCTCAATAAAGTGACGTATGGCGCTGTGGTGAATGCT
TGCGCCTACGGGAAGGACATGGCGGCTGCCAGAAGGGTGATGGAAGAGAT
GCGCAGCGCGGGTGTCATGCCCGATGCCGTCGAGTACAGCAACCTCCTCC
ATGGCTACAAGCGACTAAATGCCACAGAGGAGTGTCTGGCGTGCTTTGAC
GAGATGTTATTTTATGGCGTCAAGCCCTCCACGCGGACGTACGACGGGGT
CTTGGGTGCCTTGGCCGCAGCCGAGCGGTGGCAGGTGTTCAAGATGTACC
TCGACAGAATGCAAAGAGAAGGAGTGCGTCTCTCTGCAATTACGTATGGG
TGGGCCGTGAGGGGGGCGGAGCGTGCGCAAGACTGGGGAGAGGTATTATC
CTTGTTCCGGGCGCTGCAGACGGAGCATTATCATCCCACTGCGTCCACCT
GTCATTCAGCGCTCAAGGCGTCGCTGGCATTGA

Coding sequence (CDS) from alignment at scaffold_17:558481..560013+

>mRNA_6968 ID=mRNA_6968|Name=jgi.p|Nanoce1779_2|651216|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_17:558481..560013+ (Nannochloropsis oceanica)
ATGATGTTGCAGGCGCAGCCTCAGGTTGCTTCCGCGTCCACCGCTGCTGC
TCCTCCCGATGAATCGACCGCCAGAATAAGAAGAGGTAGGAGGCGGAGGA
GAAGACCACTAGGATCATCATCAGTGTCGCTGTCATCATCGTGGGGCGGC
TTACGGATGGGTTTCACGGCTATCCTTGCAGTGAGCGTATTTGGAAGGCG
GGGCACCCAGGCCTTCCTCCTCCCGGCCCCCCTGTGGGGTCCAACAACAA
GGAGCAGCAGCAGCAGCAGCAGCAGCAGTGGTAGCAGTACTAGCAGCACC
AGCATCCAAAACAGGGATACCAGCACCTGCAGCAATACCGGGATTGCTTC
GTGCTCCTCCCCCATCTCCCTTGTCTCAATAGTACCCTCCACCCGCGCCC
TACCCTCCTCCTCCTTCCTCCTCTACGCCACCTCCTCGACCTCCCCCCCT
TCAAGCAAGACCAATCCGCGCGAGCGTCTCTACAATCTCGTCAATGACTT
ACACGCCCATCGCGACGCCGGGCATAAAGATGGCGTCCTCTCCACCGTCC
AATGCATTTTAGAAGACCGTACCCTCGACCTCACCCCCAAGCATTGCACC
ATGCTTGTCTCTGCCCTTGGTGCAGTAGGACTGTCAAGAGAGACGGTGAC
GGCTTTGAAGGAGATGAAAGGTAGAGGTTTATCGCTCAATAAAGTGACGT
ATGGCGCTGTGGTGAATGCTTGCGCCTACGGGAAGGACATGGCGGCTGCC
AGAAGGGTGATGGAAGAGATGCGCAGCGCGGGTGTCATGCCCGATGCCGT
CGAGTACAGCAACCTCCTCCATGGCTACAAGCGACTAAATGCCACAGAGG
AGTGTCTGGCGTGCTTTGACGAGATGTTATTTTATGGCGTCAAGCCCTCC
ACGCGGACGTACGACGGGGTCTTGGGTGCCTTGGCCGCAGCCGAGCGGTG
GCAGGTGTTCAAGATGTACCTCGACAGAATGCAAAGAGAAGGAGTGCGTC
TCTCTGCAATTACGTATGGGTGGGCCGTGAGGGGGGCGGAGCGTGCGCAA
GACTGGGGAGAGCGCTCAAGGCGTCGCTGGCATTGAATGATGTTGCAGGC
GCAGCCTCAGGTTGCTTCCGCGTCCACCGCTGCTGCTCCTCCCGATGAAT
CGACCGCCAGAATAAGAAGAGGTAGGAGGCGGAGGAGAAGACCACTAGGA
TCATCATCAGTGTCGCTGTCATCATCGTGGGGCGGCTTACGGATGGGTTT
CACGGCTATCCTTGCAGTGAGCGTATTTGGAAGGCGGGGCACCCAGGCCT
TCCTCCTCCCGGCCCCCCTGTGGGGTCCAACAACAAGGAGCAGCAGCAGC
AGCAGCAGCAGCAGTGGTAGCAGTACTAGCAGCACCAGCATCCAAAACAG
GGATACCAGCACCTGCAGCAATACCGGGATTGCTTCGTGCTCCTCCCCCA
TCTCCCTTGTCTCAATAGTACCCTCCACCCGCGCCCTACCCTCCTCCTCC
TTCCTCCTCTACGCCACCTCCTCGACCTCCCCCCCTTCAAGCAAGACCAA
TCCGCGCGAGCGTCTCTACAATCTCGTCAATGACTTACACGCCCATCGCG
ACGCCGGGCATAAAGATGGCGTCCTCTCCACCGTCCAATGCATTTTAGAA
GACCGTACCCTCGACCTCACCCCCAAGCATTGCACCATGCTTGTCTCTGC
CCTTGGTGCAGTAGGACTGTCAAGAGAGACGGTGACGGCTTTGAAGGAGA
TGAAAGGTAGAGGTTTATCGCTCAATAAAGTGACGTATGGCGCTGTGGTG
AATGCTTGCGCCTACGGGAAGGACATGGCGGCTGCCAGAAGGGTGATGGA
AGAGATGCGCAGCGCGGGTGTCATGCCCGATGCCGTCGAGTACAGCAACC
TCCTCCATGGCTACAAGCGACTAAATGCCACAGAGGAGTGTCTGGCGTGC
TTTGACGAGATGTTATTTTATGGCGTCAAGCCCTCCACGCGGACGTACGA
CGGGGTCTTGGGTGCCTTGGCCGCAGCCGAGCGGTGGCAGGTGTTCAAGA
TGTACCTCGACAGAATGCAAAGAGAAGGAGTGCGTCTCTCTGCAATTACG
TATGGGTGGGCCGTGAGGGGGGCGGAGCGTGCGCAAGACTGGGGAGAGCG
CTCAAGGCGTCGCTGGCATTGA

Synonyms

Publications