jgi.p|Nanoce1779_2|596947, mRNA_6965 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596947
Unique NamemRNA_6965
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1374
Alignment locationscaffold_17:548287..549884 -

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Properties
Property NameValue
TranscriptId597033
TrackFilteredModels2
ProteinId596947
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:548287..549884 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596947gene_6965Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596947mRNA_6965-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6965CDS_6965Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6965 ID=mRNA_6965|Name=jgi.p|Nanoce1779_2|596947|organism=Nannochloropsis oceanica|type=mRNA|length=1374bp
GGTGGCTCATCCCTCGCTTGGCCACGTGGGCACCTCTTTTGTCCCCCATC
GTTGCTCTCACTTCATTTTCCCCTGTTTTGTTATTTCCCTCCCTTGTCCA
TTCTATCATTCCCTGGCCCCTGCTCTTTGGAATGAGCAGACAAAACGCTC
AGCCCCGGGAGAAGGTGCGGCATACATGCCCCTCTCATTGTTGATTTTTC
ATCACCAATCATAGACAATAATTTGAAATTGCTCGCACGAAAACATACAT
GAATAAAGGTTCAATCTATCCACTGGACTATTGGTGCGTAAAATATGCGC
ATGCTTGAGATGCTGGGACATCAGAATGCACCATGGCGTTGCTGTACAAG
TCGAGACAGGGCAACTGAAAGTCTTTCGTGTTGACGGCTAGATCCACAGT
AGATAAAGGGAAGATCATAGGTCTTAGAGTTCTGACAAGGACATCCACAG
GGTTGTTATTGTTGCCCCTGGTGGAAGCGGCGGAGGGAGTGCAAGCATGT
GGACGCTGGCTGGGAGGTAAACCCCCCCCTTAAAATCTCATTGCAGCATA
CATGTATGCTACCTCTCTGTGGCACAAGTCAATGCGCTTGCATTCAAATG
AAGAGAGCTCTTAAAAGAAAACCAAGCACCCACAGCAATCGACTCGGAAA
GCGGAAAGGAACGCAACGAAATGGACCTGCTTCCTCCAAGGGGTTTATGC
TTCATCGCCTAGACCTGTTCCCTTGCTTCGCCTCTACGCTTCCAGCACAA
GCGTCCATAAACAAACACACTGTCAAACTCAACCCTTTCTCCTACACCGA
TACCCTCCTCCGGTACCTTCACCCCTCTCCGCACAGGCAAACACACCAGG
ACTATCCTTACGTCGGCACGACCAGCACAAAATATATCATGTCGAGCGCA
GGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGGTGCGGGAGGCGG
CGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAGGCATGGCGCGGA
GTGAAGTGATGGGTGTGACTTATTTGTGTGGGGACTGCGGTGCCCAAAAT
GTGATCAAGAACAAAGATCCCATTCGATGCCGGCAATGCAACCACCGTAT
CATGTACAAGATGCGAACGAAGCGTGTGGTCCAGTTTGAGGCACGGTAGT
GCGGGAAGGGAGGGCGAGATGCCGAAGGAGGGAAGAGGCCCGCCAGGTCA
TTGGTTCCAGCCACGGTCTCGAACATCTTCTACCATGTAAAATTTTCAAC
GAAAAGGGCACGAGAACAACATCTAAGGAAGGTGGGATGCTGCTTGAGAC
AGGAAGGATAGATGAGAGACTTACAGAGCCAACGGAACCACCTTAAAGCA
AAGAAAACACATCACATACGTAAA
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protein sequence of jgi.p|Nanoce1779_2|596947

>mRNA_6965-protein ID=mRNA_6965-protein|Name=jgi.p|Nanoce1779_2|596947|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MLPLCGTSQCACIQMKRALKRKPSTHSNRLGKRKGTQRNGPASSKGFMLH
RLDLFPCFASTLPAQASINKHTVKLNPFSYTDTLLRYLHPSPHRQTHQDY
PYVGTTSTKYIMSSAGGGVYGNYGAGAGAGGGEAGLGLGAGTGGGMARSE
VMGVTYLCGDCGAQNVIKNKDPIRCRQCNHRIMYKMRTKRVVQFEAR*
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mRNA from alignment at scaffold_17:548287..549884-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6965 ID=mRNA_6965|Name=jgi.p|Nanoce1779_2|596947|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_17:548287..549884- (Nannochloropsis oceanica)
GGTGGCTCATCCCTCGCTTGGCCACGTGGGCACCTCTTTTGTCCCCCATC
GTTGCTCTCACTTCATTTTCCCCTGTTTTGTTATTTCCCTCCCTTGTCCA
TTCTATCATTCCCTGGCCCCTGCTCTTTGGAATGAGCAGACAAAACGCTC
AGCCCCGGGAGAAGGTGCGGCATACATGCCCCTCTCATTGTTGATTTTTC
ATCACCAATCATAGACAATAATTTGAAATTGCTCGCACGAAAACATACAT
GAATAAAGGTTCAATCTATCCACTGGACTATTGGTGCGTAAAATATGCGC
ATGCTTGAGATGCTGGGACATCAGAATGCACCATGGCGTTGCTGTACAAG
TCGAGACAGGGCAACTGAAAGTCTTTCGTGTTGACGGCTAGATCCACAGT
AGATAAAGGGAAGATCATAGGTCTTAGAGTTCTGACAAGGACATCCACAG
GGTTGTTATTGTTGCCCCTGGTGGAAGCGGCGGAGGGAGTGCAAGCATGT
GGACGCTGGCTGGGAGGTAAACCCCCCCCTTAAAATCTCATTGCAGCATA
CATGTATGCTACCTCTCTGTGGCACAAGTCAATGCGCTTGCATTCAAATG
AAGAGAGCTCTTAAAAGAAAACCAAGCACCCACAGCAATCGACTCGGAAA
GCGGAAAGGAACGCAACGAAATGGACCTGCTTCCTCCAAGGGGTTTATGC
TTCATCGCCTAGACCTGTTCCCTTGCTTCGCCTCTACGCTTCCAGCACAA
GCGTCCATAAACAAACACACTGTCAAACTCAACCCTTTCTCCTACACCGA
TACCCTCCTCCGGTACCTTCACCCCTCTCCGCACAGGCAAACACACCAGG
ACTATCCTTACGTCGGCACGACCAGCACAAAATATATCATGTCGAGCGCA
GGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGGTGCGGGAGGCGG
CGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAGGCATGGCGCGGA
GTGAAGTGATGGGTGTGACTTATTTGTGTGGGGGTACGTCGTAAAGTGCG
GGTGGAGGGAGGCGGGGAACAGGGAGGGAAGGTCAGAGGTCGCCGGCGCT
GAACACAGTGTCACAGTATAGAGGCGGTGAATAGTTGGCCTGTGCATGTA
CGTGCTACGTGGTTGTGTCCTTGCTTTGTATTTATACGCGCATAACTGAT
ATTGCCCTCCCCTCCCCTCACTCGCTCCGTCCCTCCCCCCCTTCTCTCAT
TTCCAAGACTGCGGTGCCCAAAATGTGATCAAGAACAAAGATCCCATTCG
ATGCCGGCAATGCAACCACCGTATCATGTACAAGATGCGAACGAAGCGTG
TGGTCCAGTTTGAGGCACGGTAGTGCGGGAAGGGAGGGCGAGATGCCGAA
GGAGGGAAGAGGCCCGCCAGGTCATTGGTTCCAGCCACGGTCTCGAACAT
CTTCTACCATGTAAAATTTTCAACGAAAAGGGCACGAGAACAACATCTAA
GGAAGGTGGGATGCTGCTTGAGACAGGAAGGATAGATGAGAGACTTACAG
AGCCAACGGAACCACCTTAAAGCAAAGAAAACACATCACATACGTAAA
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Coding sequence (CDS) from alignment at scaffold_17:548287..549884-

>mRNA_6965 ID=mRNA_6965|Name=jgi.p|Nanoce1779_2|596947|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_17:548287..549884- (Nannochloropsis oceanica)
ACTGCGGTGCCCAAAATGTGATCAAGAACAAAGATCCCATTCGATGCCGG
CAATGCAACCACCGTATCATGTACAAGATGCGAACGAAGCGTGTGGTCCA
GTTTGAGGCACGGTAGATGCTACCTCTCTGTGGCACAAGTCAATGCGCTT
GCATTCAAATGAAGAGAGCTCTTAAAAGAAAACCAAGCACCCACAGCAAT
CGACTCGGAAAGCGGAAAGGAACGCAACGAAATGGACCTGCTTCCTCCAA
GGGGTTTATGCTTCATCGCCTAGACCTGTTCCCTTGCTTCGCCTCTACGC
TTCCAGCACAAGCGTCCATAAACAAACACACTGTCAAACTCAACCCTTTC
TCCTACACCGATACCCTCCTCCGGTACCTTCACCCCTCTCCGCACAGGCA
AACACACCAGGACTATCCTTACGTCGGCACGACCAGCACAAAATATATCA
TGTCGAGCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGGT
GCGGGAGGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAGG
CATGGCGCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGGACTGCG
GTGCCCAAAATGTGATCAAGAACAAAGATCCCATTCGATGCCGGCAATGC
AACCACCGTATCATGTACAAGATGCGAACGAAGCGTGTGGTCCAGTTTGA
GGCACGGTAGATGCTACCTCTCTGTGGCACAAGTCAATGCGCTTGCATTC
AAATGAAGAGAGCTCTTAAAAGAAAACCAAGCACCCACAGCAATCGACTC
GGAAAGCGGAAAGGAACGCAACGAAATGGACCTGCTTCCTCCAAGGGGTT
TATGCTTCATCGCCTAGACCTGTTCCCTTGCTTCGCCTCTACGCTTCCAG
CACAAGCGTCCATAAACAAACACACTGTCAAACTCAACCCTTTCTCCTAC
ACCGATACCCTCCTCCGGTACCTTCACCCCTCTCCGCACAGGCAAACACA
CCAGGACTATCCTTACGTCGGCACGACCAGCACAAAATATATCATGTCGA
GCGCAGGCGGCGGGGTCTACGGAAACTACGGTGCAGGGGCAGGTGCGGGA
GGCGGCGAGGCGGGTCTTGGCCTTGGGGCTGGGACAGGTGGAGGCATGGC
GCGGAGTGAAGTGATGGGTGTGACTTATTTGTGTGGGG
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Synonyms
Publications