Properties
| Property Name | Value |
|---|
| TranscriptId | 597016 |
| Track | FilteredModels2 |
| ProteinId | 596930 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:539196..541905 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6963 ID=mRNA_6963|Name=jgi.p|Nanoce1779_2|596930|organism=Nannochloropsis oceanica|type=mRNA|length=2478bp
CAGGTGCTCGACCTTCCTTTGCATACGAACTCTGATTTCCCAGATAGCCC
ACAATATGCGTCTCACTTCATCTTCTTCCGCCTTCCTGGCCGCCCTGGCC
TTTATGACCTCTGGCTGCGCATCCGCTGCGCCAAGTGCAGCCGACCTCAA
GGACAATCAGCCTCGTGGCCCCGTGCTGCCCCTCCGTCCCATCTCTCAAG
TCCCCTTCAACGCCCCGTCCTTCATCGTGGGTGGAGAACTTGCAGACAGT
AACGAGTCCAAGTGGACGGTGGCCCTGGTGACCAACACGCATGGCCGCCT
CTTTCAATTCTGCGGCGGCACTCTGGTTGCACCCAAATTCGTGGTCACCG
CCGCGCATTGTGTAGCCGCCGGCTACGAAATGTCTGCGATACTGGGACGG
TATACCTTGTCAGATTCTACGCAGGGGGAGATGATCAAGGTGGCTGAAGC
GTTCATGCACCCTGAGTACGACCCCAATACGATGACCGGGGACATTGCCA
TTTTGAGGCTTGAAACTGCCGCCCCTGCTGATATTCCAATTTTGCCTCTA
ATCCCCACGATGCAAGCGAAGGGGATGACGGAGGGGGAGATGGTGACGGT
ATTGGGGTGGGGGTTGACGGAGGAGAGGGCGCAGAAGGAGCAGAAGGAGG
CCCCCCCTGTGCAGGGCTCCGGGACAGATGTCCTTCGCTCAGTCACCTTG
CCGATTATAGGAAATAAAAAGTGTAATGCGGAATATCGGGCGTTGACGGG
CAAAGAATCGATCCTGGACGAGGAGGTCTGCGCGGGGGTGGATCGTGGGG
GACTAGACTCGTGCCAGGGGGATAGCGGAGGACCCTTGACAGCGACGGTA
GGAGGGACGACCTACCTGTTTGGTGTTGTTTCATGGGGCATTGGCTGTGC
GAGGGCCAAGGTGCCGGGAGTGTATACCCGAATTTCGGCGCATGCGGATT
GGCTGGCGAGCAAGATGCTTTTGGAGGTGGTAACGGACACCGGTCGGGGC
CTGGGCGCCGTTACAGTGTTGTTCGCTGGGGTGGGACGTGTCGCGACGCT
GCCTCTGCTGATCAATTCCTTAGCATCTGCTGCCTTGGATGTCTCTATTG
GGTTTGCCAAGAATGCGGCAAAAGGATTCAGTGTCGATACGTCCAAGCTT
TCTCTTGCGTCGGCTGGGAAGGTGGGTCAGGCCGTGGTGACTTACTCCTC
GGACAAGGCGCAGGTAGATACGACTTCGCTGATCCTGCAGGTAGCACAAG
GAGGAAAGCAGGCAGGTGAACAATCCTTTGGCTTGACTGCGTTCTCTTTG
CCTGCAGCGGATTTTGGGGTGGCTTTTGATGGGGATTGGTTCTCGGGAGC
GGATAGCGGGAGAAATGCGTGGGTCATGGATGGGGGGGAGATCAATTCAG
GGGTTACCAAGGATGAGCAGACAAATGTGGCACTCATGTACATCAAGGGC
GCGGGGGAGTTAAGCTTCAAGTGGAGGAGTTCGTGCGAGGAGACTTATGA
TGTGCTTTACATGTTTTTGAATAATGAGCCCGTGGATGCGTTGACCGGCG
ACTCGGGGTGGGTGACCAAGAGTTTGCTGATCGAGGGAGGGGAGGAGGAG
GTGCACACCGTGGCGTTTGCCTTTGTGAAGGACAAGTCCATGGGGAAATA
TCAAGACAAGGCGTTTGTTAAGGACGTGCAGTTTGGAGCACGGGCACAGG
CAGGAATGGAACGGTTCGTCCAGGTCCCGACCGTGACTTCGAAGGCGGCG
ACGACGACGGTGAAGCCGTCCAAGGGATGGAGTGCAGTGAGGGAGGCGGG
TGATGTAGAAAGGAAGGGACGAGGGTTGAGGGGGGCGGTAAAGGAGGAAA
GGGAGTCGTCTTCGGCCTGAAGGGGAGGAATTGCCAAAAAGAAATAGGAG
GGATGTGTGCATTTACATGTGTGATGAGTCATTGACAATGAAAATTAGAA
AAAGCAAAAGGAAAGAAGGCCAAGAAGAATAGAAAGCGCACTATTTTATT
TAAATCAACGAAGAGTGAAAGAGAGAGTGCGCGTGTGTCGTTGTTTTGCC
CCACCCCATCGACCGATGGCTGGAGGCCAGTGGTGAAATGGAGGAGGGCA
CTAGACTGACGCACGTGCAGTCACTGCGAGGAGAGTGAGTCTGTAGAACG
CAACGGGGACAGAAAGCAATAGAGATAGGACGACCGCGCGAGAGAGGGAG
GGAAGAAGTGAAGAAGGAAAGAACGGAAGGGTCTTGCCATATGCATGTCT
CCATGCAGTTGTGTTTATTACCGGGAGGTTAGAGAAACGAGACGCAGAGA
AGCTGGCGCAGAGGAAGAGGGTGTGTATGTGTTCGAGAGATAAACGGTAA
AGAGAGGAAATTATCTCCTACTTTTCGCATGGGCGGGATTTGTATGGCTT
ATCCTTGGAAAAAAAGTACAACCATCAAAGAAATGACATATGAAGCAGAC
ACAGATTTTCTTCAAAAAATTAGCGCGA back to topprotein sequence of jgi.p|Nanoce1779_2|596930 >mRNA_6963-protein ID=mRNA_6963-protein|Name=jgi.p|Nanoce1779_2|596930|organism=Nannochloropsis oceanica|type=polypeptide|length=605bp
MRLTSSSSAFLAALAFMTSGCASAAPSAADLKDNQPRGPVLPLRPISQVP
FNAPSFIVGGELADSNESKWTVALVTNTHGRLFQFCGGTLVAPKFVVTAA
HCVAAGYEMSAILGRYTLSDSTQGEMIKVAEAFMHPEYDPNTMTGDIAIL
RLETAAPADIPILPLIPTMQAKGMTEGEMVTVLGWGLTEERAQKEQKEAP
PVQGSGTDVLRSVTLPIIGNKKCNAEYRALTGKESILDEEVCAGVDRGGL
DSCQGDSGGPLTATVGGTTYLFGVVSWGIGCARAKVPGVYTRISAHADWL
ASKMLLEVVTDTGRGLGAVTVLFAGVGRVATLPLLINSLASAALDVSIGF
AKNAAKGFSVDTSKLSLASAGKVGQAVVTYSSDKAQVDTTSLILQVAQGG
KQAGEQSFGLTAFSLPAADFGVAFDGDWFSGADSGRNAWVMDGGEINSGV
TKDEQTNVALMYIKGAGELSFKWRSSCEETYDVLYMFLNNEPVDALTGDS
GWVTKSLLIEGGEEEVHTVAFAFVKDKSMGKYQDKAFVKDVQFGARAQAG
MERFVQVPTVTSKAATTTVKPSKGWSAVREAGDVERKGRGLRGAVKEERE
SSSA* back to topmRNA from alignment at scaffold_17:539196..541905- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6963 ID=mRNA_6963|Name=jgi.p|Nanoce1779_2|596930|organism=Nannochloropsis oceanica|type=mRNA|length=2710bp|location=Sequence derived from alignment at scaffold_17:539196..541905- (Nannochloropsis oceanica)
CAGGTGCTCGACCTTCCTTTGCATACGAACTCTGATTTCCCAGATAGCCC
ACAATATGCGTCTCACTTCATCTTCTTCCGCCTTCCTGGCCGCCCTGGCC
TTTATGACCTCTGGCTGCGCATCCGCTGCGCCAAGTGCAGCCGACCTCAA
GGACAATCAGCCTCGTGGCCCCGTGCTGCCCCTCCGTCCCATCTCTCAAG
TCCCCTTCAACGCCCCGTCCTTCATCGTGGGTGGAGAACTTGCAGACAGT
AACGAGTCCAAGTGGACGGTGGCCCTGGTGACCAACACGCATGTAAGCCA
CAAGCCCTCAGCGCAAATCATTGCTAGCCCTGCCTTTCCCCCCTTCCTCT
GATTGTGTGTACCGCTGCTTGCCGTGTTCACGTCCTTTTCCTTGTCTGAA
TTCCACCCTTACTTGTTAATGTCCTCATTGTCATAATCTCTCTAACCCCT
TCAAATACTCTCCTCCGAAGATCACCTCCACTCACCCTTTCCTCCTCGCC
TACCCACCCCCGTCATACCCCTAGGGCCGCCTCTTTCAATTCTGCGGCGG
CACTCTGGTTGCACCCAAATTCGTGGTCACCGCCGCGCATTGTGTAGCCG
CCGGCTACGAAATGTCTGCGATACTGGGACGGTATACCTTGTCAGATTCT
ACGCAGGGGGAGATGATCAAGGTGGCTGAAGCGTTCATGCACCCTGAGTA
CGACCCCAATACGATGACCGGGGACATTGCCATTTTGAGGCTTGAAACTG
CCGCCCCTGCTGATATTCCAATTTTGCCTCTAATCCCCACGATGCAAGCG
AAGGGGATGACGGAGGGGGAGATGGTGACGGTATTGGGGTGGGGGTTGAC
GGAGGAGAGGGCGCAGAAGGAGCAGAAGGAGGCCCCCCCTGTGCAGGGCT
CCGGGACAGATGTCCTTCGCTCAGTCACCTTGCCGATTATAGGAAATAAA
AAGTGTAATGCGGAATATCGGGCGTTGACGGGCAAAGAATCGATCCTGGA
CGAGGAGGTCTGCGCGGGGGTGGATCGTGGGGGACTAGACTCGTGCCAGG
GGGATAGCGGAGGACCCTTGACAGCGACGGTAGGAGGGACGACCTACCTG
TTTGGTGTTGTTTCATGGGGCATTGGCTGTGCGAGGGCCAAGGTGCCGGG
AGTGTATACCCGAATTTCGGCGCATGCGGATTGGCTGGCGAGCAAGATGC
TTTTGGAGGTGGTAACGGACACCGGTCGGGGCCTGGGCGCCGTTACAGTG
TTGTTCGCTGGGGTGGGACGTGTCGCGACGCTGCCTCTGCTGATCAATTC
CTTAGCATCTGCTGCCTTGGATGTCTCTATTGGGTTTGCCAAGAATGCGG
CAAAAGGATTCAGTGTCGATACGTCCAAGCTTTCTCTTGCGTCGGCTGGG
AAGGTGGGTCAGGCCGTGGTGACTTACTCCTCGGACAAGGCGCAGGTAGA
TACGACTTCGCTGATCCTGCAGGTAGCACAAGGAGGAAAGCAGGCAGGTG
AACAATCCTTTGGCTTGACTGCGTTCTCTTTGCCTGCAGCGGATTTTGGG
GTGGCTTTTGATGGGGATTGGTTCTCGGGAGCGGATAGCGGGAGAAATGC
GTGGGTCATGGATGGGGGGGAGATCAATTCAGGGGTTACCAAGGATGAGC
AGACAAATGTGGCACTCATGTACATCAAGGGCGCGGGGGAGTTAAGCTTC
AAGTGGAGGAGTTCGTGCGAGGAGACTTATGATGTGCTTTACATGTTTTT
GAATAATGAGCCCGTGGATGCGTTGACCGGCGACTCGGGGTGGGTGACCA
AGAGTTTGCTGATCGAGGGAGGGGAGGAGGAGGTGCACACCGTGGCGTTT
GCCTTTGTGAAGGACAAGTCCATGGGGAAATATCAAGACAAGGCGTTTGT
TAAGGACGTGCAGTTTGGAGCACGGGCACAGGCAGGAATGGAACGGTTCG
TCCAGGTCCCGACCGTGACTTCGAAGGCGGCGACGACGACGGTGAAGCCG
TCCAAGGGATGGAGTGCAGTGAGGGAGGCGGGTGATGTAGAAAGGAAGGG
ACGAGGGTTGAGGGGGGCGGTAAAGGAGGAAAGGGAGTCGTCTTCGGCCT
GAAGGGGAGGAATTGCCAAAAAGAAATAGGAGGGATGTGTGCATTTACAT
GTGTGATGAGTCATTGACAATGAAAATTAGAAAAAGCAAAAGGAAAGAAG
GCCAAGAAGAATAGAAAGCGCACTATTTTATTTAAATCAACGAAGAGTGA
AAGAGAGAGTGCGCGTGTGTCGTTGTTTTGCCCCACCCCATCGACCGATG
GCTGGAGGCCAGTGGTGAAATGGAGGAGGGCACTAGACTGACGCACGTGC
AGTCACTGCGAGGAGAGTGAGTCTGTAGAACGCAACGGGGACAGAAAGCA
ATAGAGATAGGACGACCGCGCGAGAGAGGGAGGGAAGAAGTGAAGAAGGA
AAGAACGGAAGGGTCTTGCCATATGCATGTCTCCATGCAGTTGTGTTTAT
TACCGGGAGGTTAGAGAAACGAGACGCAGAGAAGCTGGCGCAGAGGAAGA
GGGTGTGTATGTGTTCGAGAGATAAACGGTAAAGAGAGGAAATTATCTCC
TACTTTTCGCATGGGCGGGATTTGTATGGCTTATCCTTGGAAAAAAAGTA
CAACCATCAAAGAAATGACATATGAAGCAGACACAGATTTTCTTCAAAAA
ATTAGCGCGA back to topCoding sequence (CDS) from alignment at scaffold_17:539196..541905- >mRNA_6963 ID=mRNA_6963|Name=jgi.p|Nanoce1779_2|596930|organism=Nannochloropsis oceanica|type=CDS|length=3630bp|location=Sequence derived from alignment at scaffold_17:539196..541905- (Nannochloropsis oceanica)
GGCCGCCTCTTTCAATTCTGCGGCGGCACTCTGGTTGCACCCAAATTCGT
GGTCACCGCCGCGCATTGTGTAGCCGCCGGCTACGAAATGTCTGCGATAC
TGGGACGGTATACCTTGTCAGATTCTACGCAGGGGGAGATGATCAAGGTG
GCTGAAGCGTTCATGCACCCTGAGTACGACCCCAATACGATGACCGGGGA
CATTGCCATTTTGAGGCTTGAAACTGCCGCCCCTGCTGATATTCCAATTT
TGCCTCTAATCCCCACGATGCAAGCGAAGGGGATGACGGAGGGGGAGATG
GTGACGGTATTGGGGTGGGGGTTGACGGAGGAGAGGGCGCAGAAGGAGCA
GAAGGAGGCCCCCCCTGTGCAGGGCTCCGGGACAGATGTCCTTCGCTCAG
TCACCTTGCCGATTATAGGAAATAAAAAGTGTAATGCGGAATATCGGGCG
TTGACGGGCAAAGAATCGATCCTGGACGAGGAGGTCTGCGCGGGGGTGGA
TCGTGGGGGACTAGACTCGTGCCAGGGGGATAGCGGAGGACCCTTGACAG
CGACGGTAGGAGGGACGACCTACCTGTTTGGTGTTGTTTCATGGGGCATT
GGCTGTGCGAGGGCCAAGGTGCCGGGAGTGTATACCCGAATTTCGGCGCA
TGCGGATTGGCTGGCGAGCAAGATGCTTTTGGAGGTGGTAACGGACACCG
GTCGGGGCCTGGGCGCCGTTACAGTGTTGTTCGCTGGGGTGGGACGTGTC
GCGACGCTGCCTCTGCTGATCAATTCCTTAGCATCTGCTGCCTTGGATGT
CTCTATTGGGTTTGCCAAGAATGCGGCAAAAGGATTCAGTGTCGATACGT
CCAAGCTTTCTCTTGCGTCGGCTGGGAAGGTGGGTCAGGCCGTGGTGACT
TACTCCTCGGACAAGGCGCAGGTAGATACGACTTCGCTGATCCTGCAGGT
AGCACAAGGAGGAAAGCAGGCAGGTGAACAATCCTTTGGCTTGACTGCGT
TCTCTTTGCCTGCAGCGGATTTTGGGGTGGCTTTTGATGGGGATTGGTTC
TCGGGAGCGGATAGCGGGAGAAATGCGTGGGTCATGGATGGGGGGGAGAT
CAATTCAGGGGTTACCAAGGATGAGCAGACAAATGTGGCACTCATGTACA
TCAAGGGCGCGGGGGAGTTAAGCTTCAAGTGGAGGAGTTCGTGCGAGGAG
ACTTATGATGTGCTTTACATGTTTTTGAATAATGAGCCCGTGGATGCGTT
GACCGGCGACTCGGGGTGGGTGACCAAGAGTTTGCTGATCGAGGGAGGGG
AGGAGGAGGTGCACACCGTGGCGTTTGCCTTTGTGAAGGACAAGTCCATG
GGGAAATATCAAGACAAGGCGTTTGTTAAGGACGTGCAGTTTGGAGCACG
GGCACAGGCAGGAATGGAACGGTTCGTCCAGGTCCCGACCGTGACTTCGA
AGGCGGCGACGACGACGGTGAAGCCGTCCAAGGGATGGAGTGCAGTGAGG
GAGGCGGGTGATGTAGAAAGGAAGGGACGAGGGTTGAGGGGGGCGGTAAA
GGAGGAAAGGGAGTCGTCTTCGGCCTGAATGCGTCTCACTTCATCTTCTT
CCGCCTTCCTGGCCGCCCTGGCCTTTATGACCTCTGGCTGCGCATCCGCT
GCGCCAAGTGCAGCCGACCTCAAGGACAATCAGCCTCGTGGCCCCGTGCT
GCCCCTCCGTCCCATCTCTCAAGTCCCCTTCAACGCCCCGTCCTTCATCG
TGGGTGGAGAACTTGCAGACAGTAACGAGTCCAAGTGGACGGTGGCCCTG
GTGACCAACACGCATGGCCGCCTCTTTCAATTCTGCGGCGGCACTCTGGT
TGCACCCAAATTCGTGGTCACCGCCGCGCATTGTGTAGCCGCCGGCTACG
AAATGTCTGCGATACTGGGACGGTATACCTTGTCAGATTCTACGCAGGGG
GAGATGATCAAGGTGGCTGAAGCGTTCATGCACCCTGAGTACGACCCCAA
TACGATGACCGGGGACATTGCCATTTTGAGGCTTGAAACTGCCGCCCCTG
CTGATATTCCAATTTTGCCTCTAATCCCCACGATGCAAGCGAAGGGGATG
ACGGAGGGGGAGATGGTGACGGTATTGGGGTGGGGGTTGACGGAGGAGAG
GGCGCAGAAGGAGCAGAAGGAGGCCCCCCCTGTGCAGGGCTCCGGGACAG
ATGTCCTTCGCTCAGTCACCTTGCCGATTATAGGAAATAAAAAGTGTAAT
GCGGAATATCGGGCGTTGACGGGCAAAGAATCGATCCTGGACGAGGAGGT
CTGCGCGGGGGTGGATCGTGGGGGACTAGACTCGTGCCAGGGGGATAGCG
GAGGACCCTTGACAGCGACGGTAGGAGGGACGACCTACCTGTTTGGTGTT
GTTTCATGGGGCATTGGCTGTGCGAGGGCCAAGGTGCCGGGAGTGTATAC
CCGAATTTCGGCGCATGCGGATTGGCTGGCGAGCAAGATGCTTTTGGAGG
TGGTAACGGACACCGGTCGGGGCCTGGGCGCCGTTACAGTGTTGTTCGCT
GGGGTGGGACGTGTCGCGACGCTGCCTCTGCTGATCAATTCCTTAGCATC
TGCTGCCTTGGATGTCTCTATTGGGTTTGCCAAGAATGCGGCAAAAGGAT
TCAGTGTCGATACGTCCAAGCTTTCTCTTGCGTCGGCTGGGAAGGTGGGT
CAGGCCGTGGTGACTTACTCCTCGGACAAGGCGCAGGTAGATACGACTTC
GCTGATCCTGCAGGTAGCACAAGGAGGAAAGCAGGCAGGTGAACAATCCT
TTGGCTTGACTGCGTTCTCTTTGCCTGCAGCGGATTTTGGGGTGGCTTTT
GATGGGGATTGGTTCTCGGGAGCGGATAGCGGGAGAAATGCGTGGGTCAT
GGATGGGGGGGAGATCAATTCAGGGGTTACCAAGGATGAGCAGACAAATG
TGGCACTCATGTACATCAAGGGCGCGGGGGAGTTAAGCTTCAAGTGGAGG
AGTTCGTGCGAGGAGACTTATGATGTGCTTTACATGTTTTTGAATAATGA
GCCCGTGGATGCGTTGACCGGCGACTCGGGGTGGGTGACCAAGAGTTTGC
TGATCGAGGGAGGGGAGGAGGAGGTGCACACCGTGGCGTTTGCCTTTGTG
AAGGACAAGTCCATGGGGAAATATCAAGACAAGGCGTTTGTTAAGGACGT
GCAGTTTGGAGCACGGGCACAGGCAGGAATGGAACGGTTCGTCCAGGTCC
CGACCGTGACTTCGAAGGCGGCGACGACGACGGTGAAGCCGTCCAAGGGA
TGGAGTGCAGTGAGGGAGGCGGGTGATGTAGAAAGGAAGGGACGAGGGTT
GAGGGGGGCGGTAAAGGAGGAAAGGGAGTCGTCTTCGGCCTGAATGCGTC
TCACTTCATCTTCTTCCGCCTTCCTGGCCGCCCTGGCCTTTATGACCTCT
GGCTGCGCATCCGCTGCGCCAAGTGCAGCCGACCTCAAGGACAATCAGCC
TCGTGGCCCCGTGCTGCCCCTCCGTCCCATCTCTCAAGTCCCCTTCAACG
CCCCGTCCTTCATCGTGGGTGGAGAACTTGCAGACAGTAACGAGTCCAAG
TGGACGGTGGCCCTGGTGACCAACACGCAT back to top
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