jgi.p|Nanoce1779_2|596926, mRNA_6962 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596926
Unique NamemRNA_6962
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length245
Alignment locationscaffold_17:537776..538020 -

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Properties
Property NameValue
TranscriptId597012
TrackFilteredModels2
ProteinId596926
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:537776..538020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596926gene_6962Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6962CDS_6962Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596926mRNA_6962-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6962 ID=mRNA_6962|Name=jgi.p|Nanoce1779_2|596926|organism=Nannochloropsis oceanica|type=mRNA|length=245bp
ATGGAGGAGGAGGAGAAAGAGGAGAAAGAGTGCCGACGCTTCCTCGTCTT
CTTCTTCTTGTTCTTTTTAGTGTTCTTGCTTGTACACCTGCGCTCCAGTT
GCTGTGCTGCCTCCTCCGCCTCCTCCCTCTGTTTTTTCCTGAAAGCCATG
GATAGAAGCTCCGCCTCGCTCCAGCCCCCCGCTCTTGGGCGCTCCTTAAC
AGTACTGCCATTGCTACTGCTGTTCATGCTGTCCTGCCTGTTGTT
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protein sequence of jgi.p|Nanoce1779_2|596926

>mRNA_6962-protein ID=mRNA_6962-protein|Name=jgi.p|Nanoce1779_2|596926|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MEEEEKEEKECRRFLVFFFLFFLVFLLVHLRSSCCAASSASSLCFFLKAM
DRSSASLQPPALGRSLTVLPLLLLFMLSCLL
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mRNA from alignment at scaffold_17:537776..538020-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6962 ID=mRNA_6962|Name=jgi.p|Nanoce1779_2|596926|organism=Nannochloropsis oceanica|type=mRNA|length=245bp|location=Sequence derived from alignment at scaffold_17:537776..538020- (Nannochloropsis oceanica)
ATGGAGGAGGAGGAGAAAGAGGAGAAAGAGTGCCGACGCTTCCTCGTCTT
CTTCTTCTTGTTCTTTTTAGTGTTCTTGCTTGTACACCTGCGCTCCAGTT
GCTGTGCTGCCTCCTCCGCCTCCTCCCTCTGTTTTTTCCTGAAAGCCATG
GATAGAAGCTCCGCCTCGCTCCAGCCCCCCGCTCTTGGGCGCTCCTTAAC
AGTACTGCCATTGCTACTGCTGTTCATGCTGTCCTGCCTGTTGTT
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Coding sequence (CDS) from alignment at scaffold_17:537776..538020-

>mRNA_6962 ID=mRNA_6962|Name=jgi.p|Nanoce1779_2|596926|organism=Nannochloropsis oceanica|type=CDS|length=245bp|location=Sequence derived from alignment at scaffold_17:537776..538020- (Nannochloropsis oceanica)
ATGGAGGAGGAGGAGAAAGAGGAGAAAGAGTGCCGACGCTTCCTCGTCTT
CTTCTTCTTGTTCTTTTTAGTGTTCTTGCTTGTACACCTGCGCTCCAGTT
GCTGTGCTGCCTCCTCCGCCTCCTCCCTCTGTTTTTTCCTGAAAGCCATG
GATAGAAGCTCCGCCTCGCTCCAGCCCCCCGCTCTTGGGCGCTCCTTAAC
AGTACTGCCATTGCTACTGCTGTTCATGCTGTCCTGCCTGTTGTT
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Synonyms
Publications