jgi.p|Nanoce1779_2|596916, mRNA_6961 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596916
Unique NamemRNA_6961
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1140
Alignment locationscaffold_17:530365..531504 +

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Properties
Property NameValue
TranscriptId597002
TrackFilteredModels2
ProteinId596916
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:530365..531504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596916gene_6961Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596916mRNA_6961-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6961CDS_6961Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6961 ID=mRNA_6961|Name=jgi.p|Nanoce1779_2|596916|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
AGGTCCGGTTCGTCGCCTCTTCGCGCTTCAAGATGGGGCCGCACACTCAA
CCCACAAAAGCACATGCGGCTATGGGAGGGGCCGCGTCTTACTCCCCCTG
TACGTGCTCCACCACCACGGTATCAAGACGGAGAAGCTCCTTCCGCCGCT
CCCCTACCTTACTCTTTGTGCTTCTTGTTGCATCGCTATTCAGCGCAGCT
AGTGCGATTCTCTCCGCCACTACCTACCCCCGCACCCGCGCCGCCGTATT
ATTCTCCCGAGGCAAGACACAAGACGCTGCTACAAGTACCATGTCGTCAG
GCACCGTGATCAAACCCTTTGTCAAGGACCAAGCTGATAGCAAATGGGAT
ACGGGGCGTTTCTTTCGGGCCGTGGTGGACGCGCAAGTTAATCAGGTCAC
AGAGGAGGTCAATCGCGTTCGTGCATTTATCACCATCCCTCCCGGGGTGT
TCAACGCAAACAGGCACCCGGAGGAAGTCGCGCAGCAGGTGGGTAAGTTG
GCAGTGGACGTAGGATTTGGTTACTTGCAGAGTGCGGCGCTGGGGTACGC
GTTCGGGTTTGGAGGGGCGTTGATGGCAGATGACATGACCAAGAAATTGG
GAGCGAGGTTTTGTGGTAAGACTTTTCCGCATAAGCGGGGATTGAAGCAG
GCAAAGCAGTTTGGGGAGTTCTGTGCAGCCTTTACGGCGTTTGAGGGTTT
GATGCACGTGGGTAGGGGGGTGAATGATAAGTGGAATGGGATTGTGGGGT
CCACGATGGTAGGAATGTTCATGATGCGCAACCGACCGTTACCGGCGCAG
TTGAAGAATGGGTTAACGTTCGGTGGCTTCAATTATGTGATCTCGGCGTT
TGGGGGGGGGAAGCCGGTGGAGGGGAAGGGTGGGAAGGACGGAGAGAAGG
CGGTGAAGGGTCCTGTGTTTCAGAAAGAATTACAGGCCAAGATGAGGAAA
TTGGAGGCGGAGGCAGAGAGGAAGAAGAGGAGTAGCAGCCATGTGAAGAA
GTAAGGCAAGGAAGAGGGGAGGATGAAAAGGAGTGAAATGAATAGATGAG
TGTCATTTTTTAGCAGGAGAGAAAGAGGGAGACAGGGAGGGAGGGAGGGA
GGAATGACAGACAGCCAGGTACAATAAAGACCAAACTACC
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protein sequence of jgi.p|Nanoce1779_2|596916

>mRNA_6961-protein ID=mRNA_6961-protein|Name=jgi.p|Nanoce1779_2|596916|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MGPHTQPTKAHAAMGGAASYSPCTCSTTTVSRRRSSFRRSPTLLFVLLVA
SLFSAASAILSATTYPRTRAAVLFSRGKTQDAATSTMSSGTVIKPFVKDQ
ADSKWDTGRFFRAVVDAQVNQVTEEVNRVRAFITIPPGVFNANRHPEEVA
QQVGKLAVDVGFGYLQSAALGYAFGFGGALMADDMTKKLGARFCGKTFPH
KRGLKQAKQFGEFCAAFTAFEGLMHVGRGVNDKWNGIVGSTMVGMFMMRN
RPLPAQLKNGLTFGGFNYVISAFGGGKPVEGKGGKDGEKAVKGPVFQKEL
QAKMRKLEAEAERKKRSSSHVKK*
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mRNA from alignment at scaffold_17:530365..531504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6961 ID=mRNA_6961|Name=jgi.p|Nanoce1779_2|596916|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp|location=Sequence derived from alignment at scaffold_17:530365..531504+ (Nannochloropsis oceanica)
AGGTCCGGTTCGTCGCCTCTTCGCGCTTCAAGATGGGGCCGCACACTCAA
CCCACAAAAGCACATGCGGCTATGGGAGGGGCCGCGTCTTACTCCCCCTG
TACGTGCTCCACCACCACGGTATCAAGACGGAGAAGCTCCTTCCGCCGCT
CCCCTACCTTACTCTTTGTGCTTCTTGTTGCATCGCTATTCAGCGCAGCT
AGTGCGATTCTCTCCGCCACTACCTACCCCCGCACCCGCGCCGCCGTATT
ATTCTCCCGAGGCAAGACACAAGACGCTGCTACAAGTACCATGTCGTCAG
GCACCGTGATCAAACCCTTTGTCAAGGACCAAGCTGATAGCAAATGGGAT
ACGGGGCGTTTCTTTCGGGCCGTGGTGGACGCGCAAGTTAATCAGGTCAC
AGAGGAGGTCAATCGCGTTCGTGCATTTATCACCATCCCTCCCGGGGTGT
TCAACGCAAACAGGCACCCGGAGGAAGTCGCGCAGCAGGTGGGTAAGTTG
GCAGTGGACGTAGGATTTGGTTACTTGCAGAGTGCGGCGCTGGGGTACGC
GTTCGGGTTTGGAGGGGCGTTGATGGCAGATGACATGACCAAGAAATTGG
GAGCGAGGTTTTGTGGTAAGACTTTTCCGCATAAGCGGGGATTGAAGCAG
GCAAAGCAGTTTGGGGAGTTCTGTGCAGCCTTTACGGCGTTTGAGGGTTT
GATGCACGTGGGTAGGGGGGTGAATGATAAGTGGAATGGGATTGTGGGGT
CCACGATGGTAGGAATGTTCATGATGCGCAACCGACCGTTACCGGCGCAG
TTGAAGAATGGGTTAACGTTCGGTGGCTTCAATTATGTGATCTCGGCGTT
TGGGGGGGGGAAGCCGGTGGAGGGGAAGGGTGGGAAGGACGGAGAGAAGG
CGGTGAAGGGTCCTGTGTTTCAGAAAGAATTACAGGCCAAGATGAGGAAA
TTGGAGGCGGAGGCAGAGAGGAAGAAGAGGAGTAGCAGCCATGTGAAGAA
GTAAGGCAAGGAAGAGGGGAGGATGAAAAGGAGTGAAATGAATAGATGAG
TGTCATTTTTTAGCAGGAGAGAAAGAGGGAGACAGGGAGGGAGGGAGGGA
GGAATGACAGACAGCCAGGTACAATAAAGACCAAACTACC
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Coding sequence (CDS) from alignment at scaffold_17:530365..531504+

>mRNA_6961 ID=mRNA_6961|Name=jgi.p|Nanoce1779_2|596916|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_17:530365..531504+ (Nannochloropsis oceanica)
ATGGGGCCGCACACTCAACCCACAAAAGCACATGCGGCTATGGGAGGGGC
CGCGTCTTACTCCCCCTGTACGTGCTCCACCACCACGGTATCAAGACGGA
GAAGCTCCTTCCGCCGCTCCCCTACCTTACTCTTTGTGCTTCTTGTTGCA
TCGCTATTCAGCGCAGCTAGTGCGATTCTCTCCGCCACTACCTACCCCCG
CACCCGCGCCGCCGTATTATTCTCCCGAGGCAAGACACAAGACGCTGCTA
CAAGTACCATGTCGTCAGGCACCGTGATCAAACCCTTTGTCAAGGACCAA
GCTGATAGCAAATGGGATACGGGGCGTTTCTTTCGGGCCGTGGTGGACGC
GCAAGTTAATCAGGTCACAGAGGAGGTCAATCGCGTTCGTGCATTTATCA
CCATCCCTCCCGGGGTGTTCAACGCAAACAGGCACCCGGAGGAAGTCGCG
CAGCAGGTGGGTAAGTTGGCAGTGGACGTAGGATTTGGTTACTTGCAGAG
TGCGGCGCTGGGGTACGCGTTCGGGTTTGGAGGGGCGTTGATGGCAGATG
ACATGACCAAGAAATTGGGAGCGAGGTTTTGTGGTAAGACTTTTCCGCAT
AAGCGGGGATTGAAGCAGGCAAAGCAGTTTGGGGAGTTCTGTGCAGCCTT
TACGGCGTTTGAGGGTTTGATGCACGTGGGTAGGGGGGTGAATGATAAGT
GGAATGGGATTGTGGGGTCCACGATGGTAGGAATGTTCATGATGCGCAAC
CGACCGTTACCGGCGCAGTTGAAGAATGGGTTAACGTTCGGTGGCTTCAA
TTATGTGATCTCGGCGTTTGGGGGGGGGAAGCCGGTGGAGGGGAAGGGTG
GGAAGGACGGAGAGAAGGCGGTGAAGGGTCCTGTGTTTCAGAAAGAATTA
CAGGCCAAGATGAGGAAATTGGAGGCGGAGGCAGAGAGGAAGAAGAGGAG
TAGCAGCCATGTGAAGAAGTAA
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Synonyms
Publications