jgi.p|Nanoce1779_2|596910, mRNA_6959 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596910
Unique NamemRNA_6959
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length567
Alignment locationscaffold_17:524705..525271 +

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Properties
Property NameValue
TranscriptId596996
TrackFilteredModels2
ProteinId596910
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:524705..525271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596910gene_6959Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596910mRNA_6959-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6959CDS_6959Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6959 ID=mRNA_6959|Name=jgi.p|Nanoce1779_2|596910|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
AATTAAATTGTTGTGTGTTGAGGCCTTGATCTATTGATTCGTTTGGGTGT
GGCAGTCCGGGAGCTCTCCTTTTGAAGAGAATGGACGACGATGCGCATGG
CCTCCTCCCTCCTCCCCCTTCCCCGCCCTGGTGACCGCAAGAACACGTCA
AGGAGGGATGCGGGGCTGAAGGAGGCGCCCGGTCCCATCCACGTGCTGAA
AATCGCTCTGAAAATAACATTGATTGACTTCCTCCTCTTTTTTCTCCTCC
TCCTCTTCCGCCTCTTCCTCCTTGTTTTGCTCCTCCTCTTCTTCCTTACC
TTACCATCGTCCTTGTTCTCGTCCTTATTTTTCTTGTTCATATTCATGCT
CTTCTCTTTCTGCTTCTTCTTCTGCTTCTTTTCTGGCTTTTGCTCTCCAT
GTCTATGGTTTCTAGAAGCTTTCACGTTCTTCCTTCTCAATCCTTTTTTC
TTCTCTGTTGCTGCTTTTCCTGCTGCTGCTGCAACGTTTTCTGCTGCTGC
TGCTGCCGCTGCTCTTTCTTAGTGTATTTTCAAGCATGCCAGGCCATGTC
GTCATAGTCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|596910

>mRNA_6959-protein ID=mRNA_6959-protein|Name=jgi.p|Nanoce1779_2|596910|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MRMASSLLPLPRPGDRKNTSRRDAGLKEAPGPIHVLKIALKITLIDFLLF
FLLLLFRLFLLVLLLLFFLTLPSSLFSSLFFLFIFMLFSFCFFFCFFSGF
CSPCLWFLEAFTFFLLNPFFFSVAAFPAAAATFSAAAAAAALS*
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mRNA from alignment at scaffold_17:524705..525271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6959 ID=mRNA_6959|Name=jgi.p|Nanoce1779_2|596910|organism=Nannochloropsis oceanica|type=mRNA|length=567bp|location=Sequence derived from alignment at scaffold_17:524705..525271+ (Nannochloropsis oceanica)
AATTAAATTGTTGTGTGTTGAGGCCTTGATCTATTGATTCGTTTGGGTGT
GGCAGTCCGGGAGCTCTCCTTTTGAAGAGAATGGACGACGATGCGCATGG
CCTCCTCCCTCCTCCCCCTTCCCCGCCCTGGTGACCGCAAGAACACGTCA
AGGAGGGATGCGGGGCTGAAGGAGGCGCCCGGTCCCATCCACGTGCTGAA
AATCGCTCTGAAAATAACATTGATTGACTTCCTCCTCTTTTTTCTCCTCC
TCCTCTTCCGCCTCTTCCTCCTTGTTTTGCTCCTCCTCTTCTTCCTTACC
TTACCATCGTCCTTGTTCTCGTCCTTATTTTTCTTGTTCATATTCATGCT
CTTCTCTTTCTGCTTCTTCTTCTGCTTCTTTTCTGGCTTTTGCTCTCCAT
GTCTATGGTTTCTAGAAGCTTTCACGTTCTTCCTTCTCAATCCTTTTTTC
TTCTCTGTTGCTGCTTTTCCTGCTGCTGCTGCAACGTTTTCTGCTGCTGC
TGCTGCCGCTGCTCTTTCTTAGTGTATTTTCAAGCATGCCAGGCCATGTC
GTCATAGTCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_17:524705..525271+

>mRNA_6959 ID=mRNA_6959|Name=jgi.p|Nanoce1779_2|596910|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_17:524705..525271+ (Nannochloropsis oceanica)
ATGCGCATGGCCTCCTCCCTCCTCCCCCTTCCCCGCCCTGGTGACCGCAA
GAACACGTCAAGGAGGGATGCGGGGCTGAAGGAGGCGCCCGGTCCCATCC
ACGTGCTGAAAATCGCTCTGAAAATAACATTGATTGACTTCCTCCTCTTT
TTTCTCCTCCTCCTCTTCCGCCTCTTCCTCCTTGTTTTGCTCCTCCTCTT
CTTCCTTACCTTACCATCGTCCTTGTTCTCGTCCTTATTTTTCTTGTTCA
TATTCATGCTCTTCTCTTTCTGCTTCTTCTTCTGCTTCTTTTCTGGCTTT
TGCTCTCCATGTCTATGGTTTCTAGAAGCTTTCACGTTCTTCCTTCTCAA
TCCTTTTTTCTTCTCTGTTGCTGCTTTTCCTGCTGCTGCTGCAACGTTTT
CTGCTGCTGCTGCTGCCGCTGCTCTTTCTTAG
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Synonyms
Publications