jgi.p|Nanoce1779_2|596889, mRNA_6953 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596889
Unique Name	mRNA_6953
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1805
Alignment location	scaffold_17:509820..511760 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596975
Track	FilteredModels2
ProteinId	596889

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:509820..511760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596889	gene_6953	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596889	mRNA_6953-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6953	CDS_6953	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:509820..511760+
coding sequence from alignment at scaffold_17:509820..511760+

mRNA sequence

>mRNA_6953 ID=mRNA_6953|Name=jgi.p|Nanoce1779_2|596889|organism=Nannochloropsis oceanica|type=mRNA|length=1805bp
ACAGCGACCATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGCCAC
CACCGCCCTATCCACGACGACTACGACCACCCCCAGCACCTTCGACAATG
AGAATCCGTCATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATGGAG
CACCACAACATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAGCGT
CTTTGCCGCCAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGCATC
CCCGGCCTTCGTACACCTTGGGACACAACCGCTTTTCTCACTTGACCTTT
GAAGAGTTCCGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGCAGT
CCCTCCCTCCTTCCAGCCCGCCTTCAACGACGATATGATCACCACCACCA
CCTCCACCGCCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAATGAC
ACCAAGAACGAGGATACAAACAGGGCGGTGACCCCAGTGAAAGACCAAGG
GTCCTGCGGCTCCTGCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGG
CCTACTTCCTCACCAATGGTGAATTGCTTGAATTAAGTATGCAAGAAATC
GTGGATTGTGATGATTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCA
AACTTTCAAATGGATTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACT
ATCCCTACGTCAGTGGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACG
TGCCCAGTAGTCCCAGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCG
GAACTCCATGGAGGGTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGG
TTGCAGTGGGTGCGTCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTT
GACGGGGCGTGCGAGGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATA
CGGAGGGGAGGAAGCAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCA
CGGGTTGGGGGATGGACGGCTATATCCTCTTGAAGCGTGACGATGGGGAT
AAGGAGGCCGCGTGTGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCC
GCAGCCCTCCGCCTCTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGG
CGGTGGCGACCCTGGTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGG
ACAGCTTTTACCTCTCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGA
CTGCGGGGGTGGCACTGCTGTCTTCACTTCCATCAACATCATCCCTTCCT
CAATTGAAAAAAACCAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACG
AAGCCCACCCTGAGCGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGC
GCAGCTCTATGCTCATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCC
TGCCGTTGAATGCAGGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTT
AATCCGGGCCCGGTGGAATATGGCTTAGATGTCACCTTGCCTTCCATTGC
TCCCTTTGGAGGGTACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCG
CCGATTTGGTTTGCATTGAGGCGGAGCTACAGTTGTGAGGAGGAGGGAGG
GAGATAGAAAGGGAGAGATGAGAGCGTTTGTGACCCACGATGGACTTGCG
TATGTGCGCTTTGTCTCCCGATGCATTCTCAGTGAATATTTTAAACAGTA
TTTTACGTCATTATTCGAAAAGATCATACAAAGGGTGGAGTGCAGGAGAT
TTTGG

protein sequence of jgi.p|Nanoce1779_2|596889

>mRNA_6953-protein ID=mRNA_6953-protein|Name=jgi.p|Nanoce1779_2|596889|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MRLLSFLLLGLVATTALSTTTTTTPSTFDNENPSSSPLFPLFRAWMEHHN
ISIPKAHFAHRLSVFAANHAFILAHNAQLHPRPSYTLGHNRFSHLTFEEF
RAMHLGWTRPTEAVPPSFQPAFNDDMITTTTSTASRALRGSIDLANDTKN
EDTNRAVTPVKDQGSCGSCYSFSAVGAVEGAYFLTNGELLELSMQEIVDC
DDLDGGCQGGEMQQTFKWINGNGGLCLLSDYPYVSGTTAEEQKVCSTCPV
VPGTAPESWTTVRRNSMEGLKEAVAGGPVSVAVGASRAWMFYESGVFDGA
CEGELNHGVLCVGYGGEEAGEYWKVKNSWGTGWGMDGYILLKRDDGDKEA
ACGILQDASFPILPQPSASSSISSLSALPAAVATLVEEKADNSSKEWTAF
TSPTQVQGSATARDCGGGTAVFTSINIIPSSIEKNQLVTVLAEGVLTKPT
LSGSYYLSVIYEGAQLYAHSGSACGNETVSLPLNAGIVHVFGFACPVNPG
PVEYGLDVTLPSIAPFGGYLISIKGKDQDGADLVCIEAELQL*

mRNA from alignment at scaffold_17:509820..511760+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6953 ID=mRNA_6953|Name=jgi.p|Nanoce1779_2|596889|organism=Nannochloropsis oceanica|type=mRNA|length=1941bp|location=Sequence derived from alignment at scaffold_17:509820..511760+ (Nannochloropsis oceanica)
ACAGCGACCATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGCCAC
CACCGCCCTATCCACGACGACTACGACCACCCCCAGCACCTTCGACAATG
AGAATCCGTCATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATGGAG
CACCACAACATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAGCGT
CTTTGCCGCCAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGCATC
CCCGGCCTTCGTACACCTTGGGACACAACCGCTTTTCTCACTTGACCTTT
GAAGAGTTCCGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGCAGT
CCCTCCCTCCTTCCAGCCCGCCTTCAACGACGATATGATCACCACCACCA
CCTCCACCGCCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAATGAC
ACCAAGAACGAGGATACAAACAGTGTGGTGGGCCAGCATTTCCCCTCCTA
CATCTTCCCCTTGCCCCCGTGGATTCCCCACCCCGACCCTTCCGCTCCCA
CCGACGACCCCCCCCCCCCCTTCCTCCCTTCCCGCCTCCGTCGACTGGGT
ATCCAAAGGGGCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGGCTCCT
GCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCCTCACC
AATGGTGAATTGCTTGAATTAAGTATGCAAGAAATCGTGGATTGTGATGA
TTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAAATGGA
TTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACGTCAGT
GGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTAGTCCC
AGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCGGAACTCCATGGAGG
GTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTGCG
TCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCGTGCGA
GGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATACGGAGGGGAGGAAG
CAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGGGGATG
GACGGCTATATCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCCGCGTG
TGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTCCGCCT
CTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGACCCTG
GTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGGACAGCTTTTACCTC
TCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGGTGGCA
CTGCTGTCTTCACTTCCATCAACATCATCCCTTCCTCAATTGAAAAAAAC
CAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACCCTGAG
CGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTATGCTC
ATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGAATGCA
GGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGCCCGGT
GGAATATGGCTTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGGAGGGT
ACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCGCCGATTTGGTTTGC
ATTGAGGCGGAGCTACAGTTGTGAGGAGGAGGGAGGGAGATAGAAAGGGA
GAGATGAGAGCGTTTGTGACCCACGATGGACTTGCGTATGTGCGCTTTGT
CTCCCGATGCATTCTCAGTGAATATTTTAAACAGTATTTTACGTCATTAT
TCGAAAAGATCATACAAAGGGTGGAGTGCAGGAGATTTTGG

Coding sequence (CDS) from alignment at scaffold_17:509820..511760+

>mRNA_6953 ID=mRNA_6953|Name=jgi.p|Nanoce1779_2|596889|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_17:509820..511760+ (Nannochloropsis oceanica)
ATGCGTTTGCTCTCCTTCCTTCTCCTGGGCCTTGTTGCCACCACCGCCCT
ATCCACGACGACTACGACCACCCCCAGCACCTTCGACAATGAGAATCCGT
CATCCTCTCCCCTCTTCCCTCTTTTCCGGGCCTGGATGGAGCACCACAAC
ATCAGCATTCCCAAGGCCCATTTTGCTCATCGTCTGAGCGTCTTTGCCGC
CAACCACGCCTTCATTCTCGCGCACAACGCTCAGCTGCATCCCCGGCCTT
CGTACACCTTGGGACACAACCGCTTTTCTCACTTGACCTTTGAAGAGTTC
CGCGCCATGCATTTGGGTTGGACGCGTCCCACAGAGGCAGTCCCTCCCTC
CTTCCAGCCCGCCTTCAACGACGATATGATCACCACCACCACCTCCACCG
CCTCCCGAGCCCTTCGTGGCAGCATTGATCTTGCCAATGACACCAAGAAC
GAGGATACAAACAGGGCGGTGACCCCAGTGAAAGACCAAGGGTCCTGCGG
CTCCTGCTACTCGTTTTCTGCCGTAGGAGCGGTGGAAGGGGCCTACTTCC
TCACCAATGGTGAATTGCTTGAATTAAGTATGCAAGAAATCGTGGATTGT
GATGATTTGGACGGAGGGTGCCAAGGTGGGGAGATGCAGCAAACTTTCAA
ATGGATTAATGGCAACGGTGGGCTGTGCCTCCTCTCTGACTATCCCTACG
TCAGTGGTACGACTGCGGAGGAGCAGAAGGTGTGCTCGACGTGCCCAGTA
GTCCCAGGCACGGCCCCCGAGAGCTGGACGACCGTCAGGCGGAACTCCAT
GGAGGGTTTGAAGGAGGCCGTGGCGGGAGGGCCTGTCTCGGTTGCAGTGG
GTGCGTCACGAGCGTGGATGTTTTACGAGAGTGGGGTGTTTGACGGGGCG
TGCGAGGGGGAGTTGAACCATGGCGTGTTGTGCGTGGGATACGGAGGGGA
GGAAGCAGGGGAGTACTGGAAGGTGAAGAACAGCTGGGGCACGGGTTGGG
GGATGGACGGCTATATCCTCTTGAAGCGTGACGATGGGGATAAGGAGGCC
GCGTGTGGAATTCTGCAGGATGCGTCTTTTCCCATTTTGCCGCAGCCCTC
CGCCTCTTCCTCCATCTCGTCTTTATCTGCGTTGCCGGCGGCGGTGGCGA
CCCTGGTCGAGGAAAAGGCTGACAATAGCAGCAAGGAATGGACAGCTTTT
ACCTCTCCAACCCAAGTGCAAGGCTCGGCCACCGCCCGCGACTGCGGGGG
TGGCACTGCTGTCTTCACTTCCATCAACATCATCCCTTCCTCAATTGAAA
AAAACCAACTCGTCACGGTCCTCGCCGAAGGCGTCCTTACGAAGCCCACC
CTGAGCGGGAGCTACTATCTCTCCGTCATTTATGAAGGGGCGCAGCTCTA
TGCTCATTCGGGGAGTGCGTGTGGTAATGAAACGGTCTCCCTGCCGTTGA
ATGCAGGGATTGTTCACGTCTTTGGTTTTGCCTGTCCAGTTAATCCGGGC
CCGGTGGAATATGGCTTAGATGTCACCTTGCCTTCCATTGCTCCCTTTGG
AGGGTACCTGATCTCAATCAAGGGAAAGGATCAGGATGGCGCCGATTTGG
TTTGCATTGAGGCGGAGCTACAGTTGTGAATGCGTTTGCTCTCCTTCCTT
CTCCTGGGCCTTGTTGCCACCACCGCCCTATCCACGACGACTACGACCAC
CCCCAGCACCTTCGACAATGAGAATCCGTCATCCTCTCCCCTCTTCCCTC
TTTTCCGGGCCTGGATGGAGCACCACAACATCAGCATTCCCAAGGCCCAT
TTTGCTCATCGTCTGAGCGTCTTTGCCGCCAACCACGCCTTCATTCTCGC
GCACAACGCTCAGCTGCATCCCCGGCCTTCGTACACCTTGGGACACAACC
GCTTTTCTCACTTGACCTTTGAAGAGTTCCGCGCCATGCATTTGGGTTGG
ACGCGTCCCACAGAGGCAGTCCCTCCCTCCTTCCAGCCCGCCTTCAACGA
CGATATGATCACCACCACCACCTCCACCGCCTCCCGAGCCCTTCGTGGCA
GCATTGATCTTGCCAATGACACCAAGAACGAGGATACAAACAGGGCGGTG
ACCCCAGTGAAAGACCAAGGGTCCTGCGGCTCCTGCTACTCGTTTTCTGC
CGTAGGAGCGGTGGAAGGGGCCTACTTCCTCACCAATGGTGAATTGCTTG
AATTAAGTATGCAAGAAATCGTGGATTGTGATGATTTGGACGGAGGGTGC
CAAGGTGGGGAGATGCAGCAAACTTTCAAATGGATTAATGGCAACGGTGG
GCTGTGCCTCCTCTCTGACTATCCCTACGTCAGTGGTACGACTGCGGAGG
AGCAGAAGGTGTGCTCGACGTGCCCAGTAGTCCCAGGCACGGCCCCCGAG
AGCTGGACGACCGTCAGGCGGAACTCCATGGAGGGTTTGAAGGAGGCCGT
GGCGGGAGGGCCTGTCTCGGTTGCAGTGGGTGCGTCACGAGCGTGGATGT
TTTACGAGAGTGGGGTGTTTGACGGGGCGTGCGAGGGGGAGTTGAACCAT
GGCGTGTTGTGCGTGGGATACGGAGGGGAGGAAGCAGGGGAGTACTGGAA
GGTGAAGAACAGCTGGGGCACGGGTTGGGGGATGGACGGCTATATCCTCT
TGAAGCGTGACGATGGGGATAAGGAGGCCGCGTGTGGAATTCTGCAGGAT
GCGTCTTTTCCCATTTTGCCGCAGCCCTCCGCCTCTTCCTCCATCTCGTC
TTTATCTGCGTTGCCGGCGGCGGTGGCGACCCTGGTCGAGGAAAAGGCTG
ACAATAGCAGCAAGGAATGGACAGCTTTTACCTCTCCAACCCAAGTGCAA
GGCTCGGCCACCGCCCGCGACTGCGGGGGTGGCACTGCTGTCTTCACTTC
CATCAACATCATCCCTTCCTCAATTGAAAAAAACCAACTCGTCACGGTCC
TCGCCGAAGGCGTCCTTACGAAGCCCACCCTGAGCGGGAGCTACTATCTC
TCCGTCATTTATGAAGGGGCGCAGCTCTATGCTCATTCGGGGAGTGCGTG
TGGTAATGAAACGGTCTCCCTGCCGTTGAATGCAGGGATTGTTCACGTCT
TTGGTTTTGCCTGTCCAGTTAATCCGGGCCCGGTGGAATATGGCTTAGAT
GTCACCTTGCCTTCCATTGCTCCCTTTGGAGGGTACCTGATCTCAATCAA
GGGAAAGGATCAGGATGGCGCCGATTTGGTTTGCATTGAGGCGGAGCTAC
AGTTGTGA

Synonyms

Publications