jgi.p|Nanoce1779_2|672364, mRNA_6952 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672364
Unique NamemRNA_6952
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1612
Alignment locationscaffold_17:507414..509210 -

Link to JBrowse

Properties
Property NameValue
TranscriptId672450
TrackFilteredModels2
ProteinId672364
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:507414..509210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672364gene_6952Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672364mRNA_6952-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6952CDS_6952Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6952 ID=mRNA_6952|Name=jgi.p|Nanoce1779_2|672364|organism=Nannochloropsis oceanica|type=mRNA|length=1612bp
AACAGTCGCAGCCGCACGCCTCTTTGCCAGTGTCATAGGGCAGCAAACGA
TGACGGCCCCTGCCAATCCACCCGTTCTGACCGGCCAGTCCTCCAAGAAA
CCTAAGCACAAGCAACGGGCAGTCTCTCATCTTACTCCCGTGCATGGTAG
CAACCAGCAGAAGTCGCTGTTGCCTGTCCCACCGCCTTCCATCCCTATCA
CTGTCGCACCCAGGGTTTGCAAAGAAGAGGGGGGAAGGGGGGAAGAAGGG
GCAGGAGCAGGAGCAGAAGCAGTTGCAGATGCGCTGGCAGCGACACCTGT
GGCTGCTGCCGCCGTGCAGCAGCAGCCACAGCAGGACGTGGACTTGTTTG
ATATCACGAGCCATGTGCAGGCGCTGCGAGAGAATGCGAAGGATGTGGAG
CAGATGCTTATAGCCTCCATGTCCAAGCTCCAGAGCACGTACCAGTCCGA
AATGAGGGCCAAGGAAGAAGTCCTAGTTCTCCTCCGACGCTCCATCGAGG
AGAAGAAGCATAAGGTGGAAGAAGTCTTAGGAGCGATTCGGACCTTGTCT
CGGGCATTCGGTGATACTTATAATGGCTCTGCTGCAAATTTGTCAGTGCC
GGGCGGTGACGATGAGGGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGAG
ATGGGGATGGAGGACGGAAACGGGATCGAGACGGAGACAGAATGGAGACT
GGTGGCAGCCATGCCCGTCAGGGAAACCAGCAGAACCAACAGCAGTGTCC
CTCTTCGCGTTCTCTTCAACACCAGGTGGCGCACCAGCAACAACGACTAC
AACTTCAACAACAGCAACAGCAGCAGCCGGCTTCGACGGTGTCTGCTGCG
AGCTCTTCGGAAGTCTGGGATAAATATGCGGCGGTTAAGGAGGAGGAAGA
GGAAGAGGAAGAGGAGGAGGAGGCAGAGGGGAGAGAGGAGTTAATGGGAG
GGATCTGCTTGGGGGAAAGGGACAAGGGGAGGTTGCTACAATTTACGGAA
GAGGAGGAGGATAATGAAGAAATTGGTCTCATTCTGGGAGGTGCTGTCGC
TGGCGGTTGTAGCCGAAACGGTGCAATGCAGAAAGAGAAGGGGACAGGGA
AGAGCCAGCTTGATAAGGAAGAAGAGCAGCGGCAGGAGAATTAGGAGGAG
TAGATGGCGGTTGGTATGATGTGACAAAGGTGTGATGGAGAATGTGAAGA
GGAGCAGAGGGAGAGAGTGAACAGTGCAGGACGGGATGGATGACAAATGA
AGAGGAACAGTGGATGTTGAGATGAAAGGAAGAGAGGAAGGAGGAGTGGA
GGTGATTGTACGTTGCAGTCGGTAAAGAAAGTCGAACTGAGTGCGTGTAC
AAGTAAGATGGTGTGTATGTTTGTGTATATGGAGAAATGCAGGTGCCAAT
AAAGAATGTTCAGAAAGAATCGAAGGTAACGTTTCTAGATAGAGGCAACA
GGATGAAAGAAGCACGTGATGAGATACCAAGAAGACAAAAAGATAAGGCC
CTGGGGGCGGGGTGCAAGACCATGCGATGCACAACATTGAAGGAAAGAGA
AGACAAGCCCCTAAAAAAGAGTTTACAGCGAACGATACGAGCAAAACCCA
TGAAGAATACGC
back to top

protein sequence of jgi.p|Nanoce1779_2|672364

>mRNA_6952-protein ID=mRNA_6952-protein|Name=jgi.p|Nanoce1779_2|672364|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MTAPANPPVLTGQSSKKPKHKQRAVSHLTPVHGSNQQKSLLPVPPPSIPI
TVAPRVCKEEGGRGEEGAGAGAEAVADALAATPVAAAAVQQQPQQDVDLF
DITSHVQALRENAKDVEQMLIASMSKLQSTYQSEMRAKEEVLVLLRRSIE
EKKHKVEEVLGAIRTLSRAFGDTYNGSAANLSVPGGDDEGGGGGGAGGGG
DGDGGRKRDRDGDRMETGGSHARQGNQQNQQQCPSSRSLQHQVAHQQQRL
QLQQQQQQQPASTVSAASSSEVWDKYAAVKEEEEEEEEEEEAEGREELMG
GICLGERDKGRLLQFTEEEEDNEEIGLILGGAVAGGCSRNGAMQKEKGTG
KSQLDKEEEQRQEN*
back to top

mRNA from alignment at scaffold_17:507414..509210-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6952 ID=mRNA_6952|Name=jgi.p|Nanoce1779_2|672364|organism=Nannochloropsis oceanica|type=mRNA|length=1797bp|location=Sequence derived from alignment at scaffold_17:507414..509210- (Nannochloropsis oceanica)
AACAGTCGCAGCCGCACGCCTCTTTGCCAGTGTCATAGGGCAGCAAACGA
TGACGGCCCCTGCCAATCCACCCGTTCTGACCGGCCAGTCCTCCAAGAAA
CCTAAGCACAAGCAACGGGCAGTCTCTCATCTTACTCCCGTGCATGGTAG
CAACCAGCAGAAGTCGCTGTTGCCTGTCCCACCGCCTTCCATCCCTATCA
CTGTCGCACCCAGGGTTTGCAAAGAAGAGGGGGGAAGGGGGGAAGAAGGG
GCAGGAGCAGGAGCAGAAGCAGTTGCAGATGCGCTGGCAGCGACACCTGT
GGCTGCTGCCGCCGTGCAGCAGCAGCCACAGCAGGACGTGGACTTGTTTG
ATATCACGAGCCATGTGCAGGCGCTGCGAGAGAATGCGAAGGATGTGGAG
CAGATGCTTATAGCCTCCATGTCCAAGGTATGTTACAAAACTGTATTGAG
TCGACCACGTCTGACGTCCCCCTCCCCACTCGCTCTCGCTTTTCCTCCTT
GTCCCCTTCCTTCCATTCATCTCAGGGTCTTTACCACACCCCGTGCGTCA
ACGCTCACCTTTTTCCTTCCTTCCTTCCTTTCTTCCTCTCTCTCTCTCTT
CTCCCTTCACAGCTCCAGAGCACGTACCAGTCCGAAATGAGGGCCAAGGA
AGAAGTCCTAGTTCTCCTCCGACGCTCCATCGAGGAGAAGAAGCATAAGG
TGGAAGAAGTCTTAGGAGCGATTCGGACCTTGTCTCGGGCATTCGGTGAT
ACTTATAATGGCTCTGCTGCAAATTTGTCAGTGCCGGGCGGTGACGATGA
GGGAGGAGGAGGAGGAGGAGCTGGAGGAGGAGGAGATGGGGATGGAGGAC
GGAAACGGGATCGAGACGGAGACAGAATGGAGACTGGTGGCAGCCATGCC
CGTCAGGGAAACCAGCAGAACCAACAGCAGTGTCCCTCTTCGCGTTCTCT
TCAACACCAGGTGGCGCACCAGCAACAACGACTACAACTTCAACAACAGC
AACAGCAGCAGCCGGCTTCGACGGTGTCTGCTGCGAGCTCTTCGGAAGTC
TGGGATAAATATGCGGCGGTTAAGGAGGAGGAAGAGGAAGAGGAAGAGGA
GGAGGAGGCAGAGGGGAGAGAGGAGTTAATGGGAGGGATCTGCTTGGGGG
AAAGGGACAAGGGGAGGTTGCTACAATTTACGGAAGAGGAGGAGGATAAT
GAAGAAATTGGTCTCATTCTGGGAGGTGCTGTCGCTGGCGGTTGTAGCCG
AAACGGTGCAATGCAGAAAGAGAAGGGGACAGGGAAGAGCCAGCTTGATA
AGGAAGAAGAGCAGCGGCAGGAGAATTAGGAGGAGTAGATGGCGGTTGGT
ATGATGTGACAAAGGTGTGATGGAGAATGTGAAGAGGAGCAGAGGGAGAG
AGTGAACAGTGCAGGACGGGATGGATGACAAATGAAGAGGAACAGTGGAT
GTTGAGATGAAAGGAAGAGAGGAAGGAGGAGTGGAGGTGATTGTACGTTG
CAGTCGGTAAAGAAAGTCGAACTGAGTGCGTGTACAAGTAAGATGGTGTG
TATGTTTGTGTATATGGAGAAATGCAGGTGCCAATAAAGAATGTTCAGAA
AGAATCGAAGGTAACGTTTCTAGATAGAGGCAACAGGATGAAAGAAGCAC
GTGATGAGATACCAAGAAGACAAAAAGATAAGGCCCTGGGGGCGGGGTGC
AAGACCATGCGATGCACAACATTGAAGGAAAGAGAAGACAAGCCCCTAAA
AAAGAGTTTACAGCGAACGATACGAGCAAAACCCATGAAGAATACGC
back to top

Coding sequence (CDS) from alignment at scaffold_17:507414..509210-

>mRNA_6952 ID=mRNA_6952|Name=jgi.p|Nanoce1779_2|672364|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_17:507414..509210- (Nannochloropsis oceanica)
CTCCAGAGCACGTACCAGTCCGAAATGAGGGCCAAGGAAGAAGTCCTAGT
TCTCCTCCGACGCTCCATCGAGGAGAAGAAGCATAAGGTGGAAGAAGTCT
TAGGAGCGATTCGGACCTTGTCTCGGGCATTCGGTGATACTTATAATGGC
TCTGCTGCAAATTTGTCAGTGCCGGGCGGTGACGATGAGGGAGGAGGAGG
AGGAGGAGCTGGAGGAGGAGGAGATGGGGATGGAGGACGGAAACGGGATC
GAGACGGAGACAGAATGGAGACTGGTGGCAGCCATGCCCGTCAGGGAAAC
CAGCAGAACCAACAGCAGTGTCCCTCTTCGCGTTCTCTTCAACACCAGGT
GGCGCACCAGCAACAACGACTACAACTTCAACAACAGCAACAGCAGCAGC
CGGCTTCGACGGTGTCTGCTGCGAGCTCTTCGGAAGTCTGGGATAAATAT
GCGGCGGTTAAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGCAGA
GGGGAGAGAGGAGTTAATGGGAGGGATCTGCTTGGGGGAAAGGGACAAGG
GGAGGTTGCTACAATTTACGGAAGAGGAGGAGGATAATGAAGAAATTGGT
CTCATTCTGGGAGGTGCTGTCGCTGGCGGTTGTAGCCGAAACGGTGCAAT
GCAGAAAGAGAAGGGGACAGGGAAGAGCCAGCTTGATAAGGAAGAAGAGC
AGCGGCAGGAGAATTAGATGACGGCCCCTGCCAATCCACCCGTTCTGACC
GGCCAGTCCTCCAAGAAACCTAAGCACAAGCAACGGGCAGTCTCTCATCT
TACTCCCGTGCATGGTAGCAACCAGCAGAAGTCGCTGTTGCCTGTCCCAC
CGCCTTCCATCCCTATCACTGTCGCACCCAGGGTTTGCAAAGAAGAGGGG
GGAAGGGGGGAAGAAGGGGCAGGAGCAGGAGCAGAAGCAGTTGCAGATGC
GCTGGCAGCGACACCTGTGGCTGCTGCCGCCGTGCAGCAGCAGCCACAGC
AGGACGTGGACTTGTTTGATATCACGAGCCATGTGCAGGCGCTGCGAGAG
AATGCGAAGGATGTGGAGCAGATGCTTATAGCCTCCATGTCCAAGCTCCA
GAGCACGTACCAGTCCGAAATGAGGGCCAAGGAAGAAGTCCTAGTTCTCC
TCCGACGCTCCATCGAGGAGAAGAAGCATAAGGTGGAAGAAGTCTTAGGA
GCGATTCGGACCTTGTCTCGGGCATTCGGTGATACTTATAATGGCTCTGC
TGCAAATTTGTCAGTGCCGGGCGGTGACGATGAGGGAGGAGGAGGAGGAG
GAGCTGGAGGAGGAGGAGATGGGGATGGAGGACGGAAACGGGATCGAGAC
GGAGACAGAATGGAGACTGGTGGCAGCCATGCCCGTCAGGGAAACCAGCA
GAACCAACAGCAGTGTCCCTCTTCGCGTTCTCTTCAACACCAGGTGGCGC
ACCAGCAACAACGACTACAACTTCAACAACAGCAACAGCAGCAGCCGGCT
TCGACGGTGTCTGCTGCGAGCTCTTCGGAAGTCTGGGATAAATATGCGGC
GGTTAAGGAGGAGGAAGAGGAAGAGGAAGAGGAGGAGGAGGCAGAGGGGA
GAGAGGAGTTAATGGGAGGGATCTGCTTGGGGGAAAGGGACAAGGGGAGG
TTGCTACAATTTACGGAAGAGGAGGAGGATAATGAAGAAATTGGTCTCAT
TCTGGGAGGTGCTGTCGCTGGCGGTTGTAGCCGAAACGGTGCAATGCAGA
AAGAGAAGGGGACAGGGAAGAGCCAGCTTGATAAGGAAGAAGAGCAGCGG
CAGGAGAATTAGATGACGGCCCCTGCCAATCCACCCGTTCTGACCGGCCA
GTCCTCCAAGAAACCTAAGCACAAGCAACGGGCAGTCTCTCATCTTACTC
CCGTGCATGGTAGCAACCAGCAGAAGTCGCTGTTGCCTGTCCCACCGCCT
TCCATCCCTATCACTGTCGCACCCAGGGTTTGCAAAGAAGAGGGGGGAAG
GGGGGAAGAAGGGGCAGGAGCAGGAGCAGAAGCAGTTGCAGATGCGCTGG
CAGCGACACCTGTGGCTGCTGCCGCCGTGCAGCAGCAGCCACAGCAGGAC
GTGGACTTGTTTGATATCACGAGCCATGTGCAGGCGCTGCGAGAGAATGC
GAAGGATGTGGAGCAGATGCTTATAGCCTCCATGTCCAAG
back to top
Synonyms
Publications