jgi.p|Nanoce1779_2|573818, mRNA_695 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573818
Unique Name	mRNA_695
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3060
Alignment location	scaffold_2:209968..213141 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573904
Track	FilteredModels2
ProteinId	573818

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:209968..213141 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573818	gene_695	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573818	mRNA_695-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_695	CDS_695	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:209968..213141+
coding sequence from alignment at scaffold_2:209968..213141+

mRNA sequence

>mRNA_695 ID=mRNA_695|Name=jgi.p|Nanoce1779_2|573818|organism=Nannochloropsis oceanica|type=mRNA|length=3060bp
TCCACACCCACCACACCTCACCTACCACCGCCAGACAGCATGCGCTTTGC
GTCTCCCATCTCTCCCAACAAGGTGGTGTCGCCCGAAGGTACGCTTGGAT
GGTCTTATGTTGATAGAGATGGGCGGAGCTATGGGCCTCGTGCGCAACGC
GGCATGTGTGACACCCCCCTTCCTCCGCACCTAAGGTTAAACACACACAC
ATTGATGCACTGGCAAACAAATATACTGACACACAGATGTACAGGCATAC
AGACACAGGCAGATACACCAAGAAAAATAGAAACACACTCACACTAACAA
ACACACAAACACTCACAGACACACACACACATACACACACATACACCTAC
ACCTTTCACTTCTTTGGATGCCAGGTTGCTCCAGACATGGACACTGTATA
AGCATAGGGCACATCCTCCGGGTGCAGGCCCCTATCATTGCATCGGAATA
TATGTTGATCCTTATCCCTCCAACGCACCAACCCACAGGCGGCGCTACCT
CCCGCATGACTAGTTTGATGGACAAATTGAAGAACGCGACGACGCGCATC
TCCGGTGCAGGCGACGATACTTCTGCCTCCCCCTCCGCTATTTCCGCAGG
GCAAGCCGCGGGGCTGCGCAATCGCCGGGAGAATGGCACATCCGTGTCTG
CTTCGAATACCACTGGCGCCAACGTTGGAGCGGAAACAGCGGCCGAGAGC
TCGAATGGGAAAACGCTCACAACATGGCAGATGTACCGTCAGTCCCGCCT
CTCGGCCTTGGCCAAATGGATCTACATTTTGGCCATCTCCCTGTTTTTTG
TCGCTATGTATTGTGGGGACTTTTCAAAGCAGCGGTCCCAGCAGGTGCTT
CCTCGCCTGACGAATAACGTGGCGGCCTTTATGGGGGACTACTCTAAGCA
CATGGATTTGTTGGGTATGCCACGCATTGACCTGACCCGCACCTGGAATG
GGCTGGCAGACAAGGCGAGTGTCAACCTGGCATTGCTCGGGCCTCGTCAC
AGTAAGGCGCTGCCCAGGGGGACGATTTTGTACGCCGGTGACTATATTTT
TAGCTGTGTGAAGGGTGGGAAGGATAGCAACACTTCCTGCATGCCCACCT
TTTTCCACCTCAGGGACGATGGTCAATTAATTCTGGCGCGAGGGACCACG
CCAAGCAAACCCTTCAAGGTCCTGTGGAAGAGCAAGGCTGGGCCCAACAA
ACACGGCAAGTATGTAGCTGCGTACGGGGAAAATGGATCGTTGGAAGTGC
GCCTAGGGGAGAGGAGAGTCTGGCGCGCCCGCAAATTTTTCCAGCCTCGG
GTGCTTCGCCCGTGGCCACTGACCAAGTAAAGTAATGAAGGGGATGTGTT
GACTGAAGCAATTTGATGAAGAAAAGACGATAAACAAGAGGCGACGAATA
CATGAAAGGGGAAATGATTGCAATATTTTGATAGAAACAAGAGGCGACGA
ACACATGAAAGGGTAAAGACTGGCAAGATTTTGATGTGGGAAAGGACGAC
GGTGACAGTGAATGAGAAGTGTATGAGCCACTGGGTTTCAGAAGAGGGAA
GACCAAGTTTCAGTTGCTTTTTGAAAGTCAAGGGATGATCTAAAATGGTG
ACTTTCACTGGGAAAGGGGTGGAATTGGCAAGGTTAAATGGATTCAACAT
ACAGTGTCAGGACGAAGATGAGAACGCCGAAAACTTTGAAAGATACTTGA
AGGCAACAGCAAGTTACTCGTTTTGCGATATCCGCTGTGAAAATTGCTTC
GAAACTACGTTGACTATATTTCATGGAATGTCGCATTTATTCCAACCGCC
AAAAAACATGTTATGGTAAGCTAGCCCTGCTCCTGTCTTGCACATCCACC
GCATGATGATAGGACATTGATTTTGGTCTCGTCTGGTGTCAAGGTTGGCC
TCATACATATGATTGCAGCGGTTGGATAACTGTCAGCAGCAGCAGCAGCA
GCAGCAGTCAGTCAGTTGTGTGTCAGACCGTCAGATGAAGCCGGACTACG
ACAGCGAAGGAGGTGAATTCGGGGGCAGCGGTGCAATTGTGCCCAGCACT
CAACTTCAGGAATGTGCCCGGCAGGAGGTCCCACCGCGAGGGATTTTTTT
GACAAGATCAAAAATAGAACAAAAACCACAATGCCACATAAAGAGCAACA
GATGGAATTCTTGAAGCTGTCTCATGATATCCTCTTTCTTCAAGCATTGC
CGCCTCTACACTTCAATTCACAAAGCCGAACATATCCCTCTACTCTCGAA
ATTACTTGCCATCCTGTGTCCGTCCATTCACACATCTTTCTGTTCAATCT
TTACATGCCCTTATCCATCGGTTGCTGCTCCTGCTCCTGCTGCTCTTGCT
GCTCTTGCTGCTCTTGCTACTCTTGCTGCTCCTTGGGTTGATCCTTGTTC
CTCTCACCACTACTGCTTGCGTTGGAAAGGATGCCGCCCGTTTCTCCTTC
GCTTGTTTCCTTCTCATCCTCGCAGCTCTCACCCTCATTTCCCTCTTTCT
CCTCACCCAATTGTTTTTTCAATGCTGCCATCTCCGCTTCGCTCAGCCGC
TCCACAGGAACCGCTTCAGCTTCTGCCTCCTCCATTTCCTTTCTCATACC
CGCAGAGGCCTTCTCACGCTTGAAGCCCTCGGCTACTTCCTTTTCCCCAC
CTGATCTCCCCTGAGTTGAAACTGCCGCTTCCACCTCACCCGCCCAATCT
TCGATAGGGTCGCCCTCATCCGCGTTCGGAGTATGTTGCAACACCCCCTT
GGAAAGCCACCGTAAGGCATTCTTGATCAACGGCGCACCACCAATCCCAT
CCCCACTACTGCTGCTACTGCTTCTGCTACTGTTGCTGCCTCTGCTGGTA
TTGATCCTGCCCCGGTCCATGTCACTGGCATTGCCGCTGTTGCTGCTGCT
GCTCCCATTACCATCGGAAGTGCCTACGGGGATGGACGAGGACGAGGGCG
CCCCCTTGGCAACACCCTCTCCTTCAGCCGGCACAGCGACACTGCTGCTA
CCAGCGCTGGTGCTACTCAAGCTCAATTTAACCTCCGAGATCCACTTCTT
TAAACCTCCG

protein sequence of jgi.p|Nanoce1779_2|573818

>mRNA_695-protein ID=mRNA_695-protein|Name=jgi.p|Nanoce1779_2|573818|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MPGCSRHGHCISIGHILRVQAPIIASEYMLILIPPTHQPTGGATSRMTSL
MDKLKNATTRISGAGDDTSASPSAISAGQAAGLRNRRENGTSVSASNTTG
ANVGAETAAESSNGKTLTTWQMYRQSRLSALAKWIYILAISLFFVAMYCG
DFSKQRSQQVLPRLTNNVAAFMGDYSKHMDLLGMPRIDLTRTWNGLADKA
SVNLALLGPRHSKALPRGTILYAGDYIFSCVKGGKDSNTSCMPTFFHLRD
DGQLILARGTTPSKPFKVLWKSKAGPNKHGKYVAAYGENGSLEVRLGERR
VWRARKFFQPRVLRPWPLTK*

mRNA from alignment at scaffold_2:209968..213141+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_695 ID=mRNA_695|Name=jgi.p|Nanoce1779_2|573818|organism=Nannochloropsis oceanica|type=mRNA|length=3174bp|location=Sequence derived from alignment at scaffold_2:209968..213141+ (Nannochloropsis oceanica)
TCCACACCCACCACACCTCACCTACCACCGCCAGACAGCATGCGCTTTGC
GTCTCCCATCTCTCCCAACAAGGTGGTGTCGCCCGAAGGTACGCTTGGAT
GGTCTTATGTTGATAGAGATGGGCGGAGCTATGGGCCTCGTGCGCAACGC
GGCATGTGTGACACCCCCCTTCCTCCGCACCTAAGGTTAAACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACATTGATGCACTGGCAAACAAATATACTGACACACAG
ATGTACAGGCATACAGACACAGGCAGATACACCAAGAAAAATAGAAACAC
ACTCACACTAACAAACACACAAACACTCACAGACACACACACACATACAC
ACACATACACCTACACCTTTCACTTCTTTGGATGCCAGGTTGCTCCAGAC
ATGGACACTGTATAAGCATAGGGCACATCCTCCGGGTGCAGGCCCCTATC
ATTGCATCGGAATATATGTTGATCCTTATCCCTCCAACGCACCAACCCAC
AGGCGGCGCTACCTCCCGCATGACTAGTTTGATGGACAAATTGAAGAACG
CGACGACGCGCATCTCCGGTGCAGGCGACGATACTTCTGCCTCCCCCTCC
GCTATTTCCGCAGGGCAAGCCGCGGGGCTGCGCAATCGCCGGGAGAATGG
CACATCCGTGTCTGCTTCGAATACCACTGGCGCCAACGTTGGAGCGGAAA
CAGCGGCCGAGAGCTCGAATGGGAAAACGCTCACAACATGGCAGATGTAC
CGTCAGTCCCGCCTCTCGGCCTTGGCCAAATGGATCTACATTTTGGCCAT
CTCCCTGTTTTTTGTCGCTATGTATTGTGGGGACTTTTCAAAGCAGCGGT
CCCAGCAGGTGCTTCCTCGCCTGACGAATAACGTGGCGGCCTTTATGGGG
GACTACTCTAAGCACATGGATTTGTTGGGTATGCCACGCATTGACCTGAC
CCGCACCTGGAATGGGCTGGCAGACAAGGCGAGTGTCAACCTGGCATTGC
TCGGGCCTCGTCACAGTAAGGCGCTGCCCAGGGGGACGATTTTGTACGCC
GGTGACTATATTTTTAGCTGTGTGAAGGGTGGGAAGGATAGCAACACTTC
CTGCATGCCCACCTTTTTCCACCTCAGGGACGATGGTCAATTAATTCTGG
CGCGAGGGACCACGCCAAGCAAACCCTTCAAGGTCCTGTGGAAGAGCAAG
GCTGGGCCCAACAAACACGGCAAGTATGTAGCTGCGTACGGGGAAAATGG
ATCGTTGGAAGTGCGCCTAGGGGAGAGGAGAGTCTGGCGCGCCCGCAAAT
TTTTCCAGCCTCGGGTGCTTCGCCCGTGGCCACTGACCAAGTAAAGTAAT
GAAGGGGATGTGTTGACTGAAGCAATTTGATGAAGAAAAGACGATAAACA
AGAGGCGACGAATACATGAAAGGGGAAATGATTGCAATATTTTGATAGAA
ACAAGAGGCGACGAACACATGAAAGGGTAAAGACTGGCAAGATTTTGATG
TGGGAAAGGACGACGGTGACAGTGAATGAGAAGTGTATGAGCCACTGGGT
TTCAGAAGAGGGAAGACCAAGTTTCAGTTGCTTTTTGAAAGTCAAGGGAT
GATCTAAAATGGTGACTTTCACTGGGAAAGGGGTGGAATTGGCAAGGTTA
AATGGATTCAACATACAGTGTCAGGACGAAGATGAGAACGCCGAAAACTT
TGAAAGATACTTGAAGGCAACAGCAAGTTACTCGTTTTGCGATATCCGCT
GTGAAAATTGCTTCGAAACTACGTTGACTATATTTCATGGAATGTCGCAT
TTATTCCAACCGCCAAAAAACATGTTATGGTAAGCTAGCCCTGCTCCTGT
CTTGCACATCCACCGCATGATGATAGGACATTGATTTTGGTCTCGTCTGG
TGTCAAGGTTGGCCTCATACATATGATTGCAGCGGTTGGATAACTGTCAG
CAGCAGCAGCAGCAGCAGCAGTCAGTCAGTTGTGTGTCAGACCGTCAGAT
GAAGCCGGACTACGACAGCGAAGGAGGTGAATTCGGGGGCAGCGGTGCAA
TTGTGCCCAGCACTCAACTTCAGGAATGTGCCCGGCAGGAGGTCCCACCG
CGAGGGATTTTTTTGACAAGATCAAAAATAGAACAAAAACCACAATGCCA
CATAAAGAGCAACAGATGGAATTCTTGAAGCTGTCTCATGATATCCTCTT
TCTTCAAGCATTGCCGCCTCTACACTTCAATTCACAAAGCCGAACATATC
CCTCTACTCTCGAAATTACTTGCCATCCTGTGTCCGTCCATTCACACATC
TTTCTGTTCAATCTTTACATGCCCTTATCCATCGGTTGCTGCTCCTGCTC
CTGCTGCTCTTGCTGCTCTTGCTGCTCTTGCTACTCTTGCTGCTCCTTGG
GTTGATCCTTGTTCCTCTCACCACTACTGCTTGCGTTGGAAAGGATGCCG
CCCGTTTCTCCTTCGCTTGTTTCCTTCTCATCCTCGCAGCTCTCACCCTC
ATTTCCCTCTTTCTCCTCACCCAATTGTTTTTTCAATGCTGCCATCTCCG
CTTCGCTCAGCCGCTCCACAGGAACCGCTTCAGCTTCTGCCTCCTCCATT
TCCTTTCTCATACCCGCAGAGGCCTTCTCACGCTTGAAGCCCTCGGCTAC
TTCCTTTTCCCCACCTGATCTCCCCTGAGTTGAAACTGCCGCTTCCACCT
CACCCGCCCAATCTTCGATAGGGTCGCCCTCATCCGCGTTCGGAGTATGT
TGCAACACCCCCTTGGAAAGCCACCGTAAGGCATTCTTGATCAACGGCGC
ACCACCAATCCCATCCCCACTACTGCTGCTACTGCTTCTGCTACTGTTGC
TGCCTCTGCTGGTATTGATCCTGCCCCGGTCCATGTCACTGGCATTGCCG
CTGTTGCTGCTGCTGCTCCCATTACCATCGGAAGTGCCTACGGGGATGGA
CGAGGACGAGGGCGCCCCCTTGGCAACACCCTCTCCTTCAGCCGGCACAG
CGACACTGCTGCTACCAGCGCTGGTGCTACTCAAGCTCAATTTAACCTCC
GAGATCCACTTCTTTAAACCTCCG

Coding sequence (CDS) from alignment at scaffold_2:209968..213141+

>mRNA_695 ID=mRNA_695|Name=jgi.p|Nanoce1779_2|573818|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_2:209968..213141+ (Nannochloropsis oceanica)
ATGCCAGGTTGCTCCAGACATGGACACTGTATAAGCATAGGGCACATCCT
CCGGGTGCAGGCCCCTATCATTGCATCGGAATATATGTTGATCCTTATCC
CTCCAACGCACCAACCCACAGGCGGCGCTACCTCCCGCATGACTAGTTTG
ATGGACAAATTGAAGAACGCGACGACGCGCATCTCCGGTGCAGGCGACGA
TACTTCTGCCTCCCCCTCCGCTATTTCCGCAGGGCAAGCCGCGGGGCTGC
GCAATCGCCGGGAGAATGGCACATCCGTGTCTGCTTCGAATACCACTGGC
GCCAACGTTGGAGCGGAAACAGCGGCCGAGAGCTCGAATGGGAAAACGCT
CACAACATGGCAGATGTACCGTCAGTCCCGCCTCTCGGCCTTGGCCAAAT
GGATCTACATTTTGGCCATCTCCCTGTTTTTTGTCGCTATGTATTGTGGG
GACTTTTCAAAGCAGCGGTCCCAGCAGGTGCTTCCTCGCCTGACGAATAA
CGTGGCGGCCTTTATGGGGGACTACTCTAAGCACATGGATTTGTTGGGTA
TGCCACGCATTGACCTGACCCGCACCTGGAATGGGCTGGCAGACAAGGCG
AGTGTCAACCTGGCATTGCTCGGGCCTCGTCACAGTAAGGCGCTGCCCAG
GGGGACGATTTTGTACGCCGGTGACTATATTTTTAGCTGTGTGAAGGGTG
GGAAGGATAGCAACACTTCCTGCATGCCCACCTTTTTCCACCTCAGGGAC
GATGGTCAATTAATTCTGGCGCGAGGGACCACGCCAAGCAAACCCTTCAA
GGTCCTGTGGAAGAGCAAGGCTGGGCCCAACAAACACGGCAAGTATGTAG
CTGCGTACGGGGAAAATGGATCGTTGGAAGTGCGCCTAGGGGAGAGGAGA
GTCTGGCGCGCCCGCAAATTTTTCCAGCCTCGGGTGCTTCGCCCGTGGCC
ACTGACCAAGTAA

Synonyms

Publications