jgi.p|Nanoce1779_2|117321, mRNA_6949 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|117321
Unique NamemRNA_6949
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length780
Alignment locationscaffold_17:500398..501740 +

Link to JBrowse

Properties
Property NameValue
TranscriptId117407
TrackFilteredModels2
ProteinId117321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:500398..501740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117321gene_6949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117321mRNA_6949-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6949CDS_6949Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6949 ID=mRNA_6949|Name=jgi.p|Nanoce1779_2|117321|organism=Nannochloropsis oceanica|type=mRNA|length=780bp
CACAAAACGAAGTGACCAAGAAAGGACGGCAACGCATGACGAATTACCTT
TTTTTGTAGATCCGGTTATAGGTGAAGAGGATAAATACAAAGAGGCCGTG
GGACAAAAAACATAACTCCAGACAGACTCCTTCATCCACTTCCTTCCTTC
CGTAACGTTCCTCTCGATGAAAAAAATCAACGACTGCTCGGCCCAAGAGA
TCGTCCAGCTTCTCGGACTCCATCCACACCCTGAAGGTGGATTTTTTAAG
GAAACGTACCGAAGCGGCGCCACGCCAGGAGCTTCCAAAGGCCTCACCGA
CGAGACGGGCACCCTCCTCCCCTCGTCCTCCATCCCTCTCTCCCCTCGTA
ATATCTGCACCTCCATCTTCTACCTCCTTACTAGCGAAGCTCCCATCGGG
TACTGGCACATGAACAAGTCAAATATAATCCACTACTACCAAGGAGGTGA
TCCGCTCTCCTACTTCCTCCTTCACCCTTCGACGGGTGCGTGGGAAAAGC
ACGTACTAGGCCCTGATCTTGCGAAAGGACAGACATTGCAATTGATTGTG
GATGGAGGAGTATGGAAGGCGACGGTGTTGGAGCAGCAGGAGGAGAGGGA
GGGAGGGAAGGAGGGGGGGTGGGGATTGTTAGGGGAGGCGGTGGCACCAG
GTTTTGATTACCGGGACATGAAATTTGGGAGGGAGGAGGAGATGGCGCGA
GCCTTTCCGCAGCACCTCGAGAAGCTGCGGGCCTATTTGAAGCCAATGGG
GACAGATGGTTGAGAGGAAGGGAAAAGAGA
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protein sequence of jgi.p|Nanoce1779_2|117321

>mRNA_6949-protein ID=mRNA_6949-protein|Name=jgi.p|Nanoce1779_2|117321|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MKKINDCSAQEIVQLLGLHPHPEGGFFKETYRSGATPGASKGLTDETGTL
LPSSSIPLSPRNICTSIFYLLTSEAPIGYWHMNKSNIIHYYQGGDPLSYF
LLHPSTGAWEKHVLGPDLAKGQTLQLIVDGGVWKATVLEQQEEREGGKEG
GWGLLGEAVAPGFDYRDMKFGREEEMARAFPQHLEKLRAYLKPMGTDG*
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mRNA from alignment at scaffold_17:500398..501740+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6949 ID=mRNA_6949|Name=jgi.p|Nanoce1779_2|117321|organism=Nannochloropsis oceanica|type=mRNA|length=1343bp|location=Sequence derived from alignment at scaffold_17:500398..501740+ (Nannochloropsis oceanica)
CACAAAACGAAGTGACCAAGAAAGGACGGCAACGCATGACGAATTACCTT
TTTTTGTAGATCCGGTTATAGGTGAAGAGGATGCTTGTCCTTCCAACCCC
CTCCTCCTGTCTCCTCCTTCTTTTACTCCCAGGCCTTCGCCTTTCTGCGC
CGGAAGAATTTCATCAAAGAAGTATTTGCTCTTTCAAGATAACCAAGTGC
GAGACATGCCTAGTACCAACAAAAATAGAAATGAAGACGATGAGGAGAAC
GAGCAAGAGAGGAGAAATACAAAGAGGCCGTGGGACAAAAAGTAACAACC
ACATGTACAATGGAAAGAACAATGTACAAGAGAGACAAAATTTCAGAATC
ATATCTCTTTTTTCTCCACGTCGTTGCCCCTCCTAGCTAGTTTCCTCTCT
CGACAAGGGCAGAGACCACACAAGAATACCCGGGACACTCCTCACGACCC
GTTGTCCCTTTATCATACCTTTCTAACCATAATAATACAATACCATCCAC
CCACCCACCCACAGACATAACTCCAGACAGACTCCTTCATCCACTTCCTT
CCTTCCGTAACGTTCCTCTCGATGAAAAAAATCAACGACTGCTCGGCCCA
AGAGATCGTCCAGCTTCTCGGACTCCATCCACGTACGTTTGATGAAGGAA
AAAAGTGATGGGGTGGGAGAGGCAAGAAAGTCGACAGGGAGGAACATCCC
TATCATTGAAACATTGGATTTCTTCTATCCTTTCTTGCATCATTCTCATC
CATTCTCCTCCCTTGCCCAACGTTTGATCCCTCATCTTAGACCCTGAAGG
TGGATTTTTTAAGGAAACGTACCGAAGCGGCGCCACGCCAGGAGCTTCCA
AAGGCCTCACCGACGAGACGGGCACCCTCCTCCCCTCGTCCTCCATCCCT
CTCTCCCCTCGTAATATCTGCACCTCCATCTTCTACCTCCTTACTAGCGA
AGCTCCCATCGGGTACTGGCACATGAACAAGTCAAATATAATCCACTACT
ACCAAGGAGGTGATCCGCTCTCCTACTTCCTCCTTCACCCTTCGACGGGT
GCGTGGGAAAAGCACGTACTAGGCCCTGATCTTGCGAAAGGACAGACATT
GCAATTGATTGTGGATGGAGGAGTATGGAAGGCGACGGTGTTGGAGCAGC
AGGAGGAGAGGGAGGGAGGGAAGGAGGGGGGGTGGGGATTGTTAGGGGAG
GCGGTGGCACCAGGTTTTGATTACCGGGACATGAAATTTGGGAGGGAGGA
GGAGATGGCGCGAGCCTTTCCGCAGCACCTCGAGAAGCTGCGGGCCTATT
TGAAGCCAATGGGGACAGATGGTTGAGAGGAAGGGAAAAGAGA
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Coding sequence (CDS) from alignment at scaffold_17:500398..501740+

>mRNA_6949 ID=mRNA_6949|Name=jgi.p|Nanoce1779_2|117321|organism=Nannochloropsis oceanica|type=CDS|length=1194bp|location=Sequence derived from alignment at scaffold_17:500398..501740+ (Nannochloropsis oceanica)
ATGAAAAAAATCAACGACTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGG
ACTCCATCCACACCCTGAAGGTGGATTTTTTAAGGAAACGTACCGAAGCG
GCGCCACGCCAGGAGCTTCCAAAGGCCTCACCGACGAGACGGGCACCCTC
CTCCCCTCGTCCTCCATCCCTCTCTCCCCTCGTAATATCTGCACCTCCAT
CTTCTACCTCCTTACTAGCGAAGCTCCCATCGGGTACTGGCACATGAACA
AGTCAAATATAATCCACTACTACCAAGGAGGTGATCCGCTCTCCTACTTC
CTCCTTCACCCTTCGACGGGTGCGTGGGAAAAGCACGTACTAGGCCCTGA
TCTTGCGAAAGGACAGACATTGCAATTGATTGTGGATGGAGGAGTATGGA
AGGCGACGGTGTTGGAGCAGCAGGAGGAGAGGGAGGGAGGGAAGGAGGGG
GGGTGGGGATTGTTAGGGGAGGCGGTGGCACCAGGTTTTGATTACCGGGA
CATGAAATTTGGGAGGGAGGAGGAGATGGCGCGAGCCTTTCCGCAGCACC
TCGAGAAGCTGCGGGCCTATTTGAAGCCAATGGGGACAGATGGTTGAATG
AAAAAAATCAACGACTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGGACT
CCATCCACACCCTGAAGGTGGATTTTTTAAGGAAACGTACCGAAGCGGCG
CCACGCCAGGAGCTTCCAAAGGCCTCACCGACGAGACGGGCACCCTCCTC
CCCTCGTCCTCCATCCCTCTCTCCCCTCGTAATATCTGCACCTCCATCTT
CTACCTCCTTACTAGCGAAGCTCCCATCGGGTACTGGCACATGAACAAGT
CAAATATAATCCACTACTACCAAGGAGGTGATCCGCTCTCCTACTTCCTC
CTTCACCCTTCGACGGGTGCGTGGGAAAAGCACGTACTAGGCCCTGATCT
TGCGAAAGGACAGACATTGCAATTGATTGTGGATGGAGGAGTATGGAAGG
CGACGGTGTTGGAGCAGCAGGAGGAGAGGGAGGGAGGGAAGGAGGGGGGG
TGGGGATTGTTAGGGGAGGCGGTGGCACCAGGTTTTGATTACCGGGACAT
GAAATTTGGGAGGGAGGAGGAGATGGCGCGAGCCTTTCCGCAGCACCTCG
AGAAGCTGCGGGCCTATTTGAAGCCAATGGGGACAGATGGTTGA
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Synonyms
Publications