jgi.p|Nanoce1779_2|117309, mRNA_6948 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|117309
Unique NamemRNA_6948
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length351
Alignment locationscaffold_17:500509..500859 -

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Properties
Property NameValue
TranscriptId117395
TrackFilteredModels2
ProteinId117309
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:500509..500859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117309gene_6948Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117309mRNA_6948-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6948CDS_6948Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6948 ID=mRNA_6948|Name=jgi.p|Nanoce1779_2|117309|organism=Nannochloropsis oceanica|type=mRNA|length=351bp
TAAAGGGACAACGGGTCGTGAGGAGTGTCCCGGGTATTCTTGTGTGGTCT
CTGCCCTTGTCGAGAGAGGAAACTAGCTAGGAGGGGCAACGACGTGGAGA
AAAAAGAGATATGATTCTGAAATTTTGTCTCTCTTGTACATTGTTCTTTC
CATTGTACATGTGGTTGTTACTTTTTGTCCCACGGCCTCTTTGTATTTCT
CCTCTCTTGCTCGTTCTCCTCATCGTCTTCATTTCTATTTTTGTTGGTAC
TAGGCATGTCTCGCACTTGGTTATCTTGAAAGAGCAAATACTTCTTTGAT
GAAATTCTTCCGGCGCAGAAAGGCGAAGGCCTGGGAGTAAAAGAAGGAGG
A
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protein sequence of jgi.p|Nanoce1779_2|117309

>mRNA_6948-protein ID=mRNA_6948-protein|Name=jgi.p|Nanoce1779_2|117309|organism=Nannochloropsis oceanica|type=polypeptide|length=63bp
MILKFCLSCTLFFPLYMWLLLFVPRPLCISPLLLVLLIVFISIFVGTRHV
SHLVILKEQILL*
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mRNA from alignment at scaffold_17:500509..500859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6948 ID=mRNA_6948|Name=jgi.p|Nanoce1779_2|117309|organism=Nannochloropsis oceanica|type=mRNA|length=351bp|location=Sequence derived from alignment at scaffold_17:500509..500859- (Nannochloropsis oceanica)
TAAAGGGACAACGGGTCGTGAGGAGTGTCCCGGGTATTCTTGTGTGGTCT
CTGCCCTTGTCGAGAGAGGAAACTAGCTAGGAGGGGCAACGACGTGGAGA
AAAAAGAGATATGATTCTGAAATTTTGTCTCTCTTGTACATTGTTCTTTC
CATTGTACATGTGGTTGTTACTTTTTGTCCCACGGCCTCTTTGTATTTCT
CCTCTCTTGCTCGTTCTCCTCATCGTCTTCATTTCTATTTTTGTTGGTAC
TAGGCATGTCTCGCACTTGGTTATCTTGAAAGAGCAAATACTTCTTTGAT
GAAATTCTTCCGGCGCAGAAAGGCGAAGGCCTGGGAGTAAAAGAAGGAGG
A
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Coding sequence (CDS) from alignment at scaffold_17:500509..500859-

>mRNA_6948 ID=mRNA_6948|Name=jgi.p|Nanoce1779_2|117309|organism=Nannochloropsis oceanica|type=CDS|length=189bp|location=Sequence derived from alignment at scaffold_17:500509..500859- (Nannochloropsis oceanica)
ATGATTCTGAAATTTTGTCTCTCTTGTACATTGTTCTTTCCATTGTACAT
GTGGTTGTTACTTTTTGTCCCACGGCCTCTTTGTATTTCTCCTCTCTTGC
TCGTTCTCCTCATCGTCTTCATTTCTATTTTTGTTGGTACTAGGCATGTC
TCGCACTTGGTTATCTTGAAAGAGCAAATACTTCTTTGA
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Synonyms
Publications