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Properties
Property Name | Value |
TranscriptId | 596963 |
Track | FilteredModels2 |
ProteinId | 596877 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_17 | supercontig | scaffold_17:498525..501567 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6947 ID=mRNA_6947|Name=jgi.p|Nanoce1779_2|596877|organism=Nannochloropsis oceanica|type=mRNA|length=2620bp AGTTTCTTTCAGTGATTATTATTCTGCCTGCCCGCCAGTCCTCGTCCTCG TTCACAACGTGAACATCCTATTTCTCCTCCTTCTTATCCGAGTGCGAGTC CGTGTGCATCAGCCGCCCCGCGGCGTGTACAGAATTGTTGAGAGTGGTGC GGTGGGATGAGGTCGTTAATTTTTTCTTTGCTGCTGAAGCCGGATCCTCT AAAGCTAACTACTGGACCTTCGTGGGCTGCCGTTGCCATACTTTTTGTGC ATCGGTCCTACGTTGATGAGGCGTGGTACTATATTGGCCTTGAGTTGTTA ATGAGGGAAGGCGCTTCGATGGCCTGAGGCGAATGGTGCTCGCTTGCCAT CTGAAGAGTATCCAAGTCGAGAAAAGAACAAGACATCTCATGATTCCCAA ACTAAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGT TGTCTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGA TCCGCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTC CAAACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAG GCATGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCC AAGATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGT GGACGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCC TGGACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTG CTGGAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACT CGACGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTC TCCCGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTA GGCATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTC CATCATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCG TGGCGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAA GGAGGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGG TGCGTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAG CGCCTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTG ATGGGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGAC GAAGCACAAGGCGGAGATGGAGAGTATACTGGAGGTTGCCAGTGCCGTCT CTTTCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCA GTAGAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGAC TGATCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAAC GGTTCGAGGCAGCGATGAATGAGTGCTTGGAGATCATCAAGCGCGAGAAG GAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACTCAAGATTTTTGAGGC CTTGGGCCCACAAAACGAAGTGACCAAGAAAGGACGGCAACGCATGACGA ATTACCTTTTTTTGTAGATCCGGTTATAGGTGAAGAGGATGCTTGTCCTT CCAACCCCCTCCTCCTGTCTCCTCCTTCTTTTACTCCCAGGCCTTCGCCT TTCTGCGCCGGAAGAATTTCATCAAAGAAGTATTTGCTCTTTCAAGATAA CCAAGTGCGAGACATGCCTAGTACCAACAAAAATAGAAATGAAGACGATG AGGAGAACGAGCAAGAGAGGAGAAATACAAAGAGGCCGTGGGACAAAAAG TAACAACCACATGTACAATGGAAAGAACAATGTACAAGAGAGACAAAATT TCAGAATCATATCTCTTTTTTCTCCACGTCGTTGCCCCTCCTAGCTAGTT TCCTCTCTCGACAAGGGCAGAGACCACACAAGAATACCCGGGACACTCCT CACGACCCGTTGTCCCTTTATCATACCTTTCTAACCATAATAATACAATA CCATCCACCCACCCACCCACAGACATAACTCCAGACAGACTCCTTCATCC ACTTCCTTCCTTCCGTAACGTTCCTCTCGATGAAAAAAATCAACGACTGC TCGGCCCAAGAGATCGTCCAGCTTCTCGGACTCCATCCACACCCTGAAGG TGGATTTTTTAAGGAAACGTACCGAAGCGGCGCCACGCCAGGAGCTTCCA AAGGCCTCACCGACGAGACGGGCACCCTCCTCCCCTCGTCCTCCATCCCT CTCTCCCCTCGTAATATCTGCACCTCCATCTTCTACCTCCTTACTAGCGA AGCTCCCATCGGGTACTGGCACATGAACAAGTCAAATATAATCCACTACT ACCAAGGAGGTGATCCGCTCTCCTACTTCCTCCTTCACCCTTCGACGGGT GCGTGGGAAAAGCACGTACTAGGCCCTGATCTTGCGAAAGGACAGACATT GCAATTGATTGTGGATGGAGGAGTATGGAAGGCGACGGTGTTGGAGCAGC AGGAGGAGAGGGAGGGAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|596877 >mRNA_6947-protein ID=mRNA_6947-protein|Name=jgi.p|Nanoce1779_2|596877|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp MVLACHLKSIQVEKRTRHLMIPKLNALLTVRQAAMYRRLLSDNTRRRITD VSLRYRSAPPPLPLVCCRGAASSKPPPSGRLPSTGNGLIGMPPPPRSPPS TVKSKPKISPPAAAARAPSIIEVDVKNFVALLNSPVPVILDCYATWCDPC KKLTPVLEKIVGKYPGRVILGKLDVDKHPELAAQLKVSSLPAVFGLCEGK LVDRFVGMPTEPILAGFLDKMLSIIPPAGTDEGVDGAPSVAERQEADLAM ADSLMKGGNNGGKEEKDKATKAGALYKQVYEELAAEETPAPYLQARCLAG LARCALMGGAAEEARQIVQLLRTKHKAEMESILEVASAVSFAEVVMQAPP EEGGLSVEDTLKKLQGDVLKAPTDLEARYQLALKCFQLQRFEAAMNECLE IIKREKEWKEGAAKALLLKIFEALGPQNEVTKKGRQRMTNYLFL* back to topmRNA from alignment at scaffold_17:498525..501567+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6947 ID=mRNA_6947|Name=jgi.p|Nanoce1779_2|596877|organism=Nannochloropsis oceanica|type=mRNA|length=3043bp|location=Sequence derived from alignment at scaffold_17:498525..501567+ (Nannochloropsis oceanica) AGTTTCTTTCAGTGATTATTATTCTGCCTGCCCGCCAGTCCTCGTCCTCG
TTCACAACGTGAACATCCTATTTCTCCTCCTTCTTATCCGAGTGCGAGTC
CGTGTGCATCAGCCGCCCCGCGGCGTGTACAGAATTGTTGAGAGTGGTGC
GGTGGGATGAGGTCGTTAATTTTTTCTTTGCTGCTGAAGCCGGATCCTCT
AAAGCTAACTACTGGACCTTCGTGGGCTGCCGTTGCCATACTTTTTGTGC
ATCGGTCCTACGTTGATGAGGCGTGGTACTATATTGGCCTTGAGTTGTTA
ATGAGGGAAGGCGCTTCGATGGCCTGAGGCGAATGGTGCTCGCTTGCCAT
CTGAAGAGTATCCAAGTCGAGAAAAGAACAAGACATCTCATGATTCCCAA
ACTAAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGT
TGTCTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGA
TCCGCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTC
CAAACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAG
GCATGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCC
AAGATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGT
GGACGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCC
TGGACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTG
CTGGAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACT
CGACGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTC
TCCCGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTA
GGCATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTC
CATCATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCG
TGGCGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAA
GGAGGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGG
TGCGTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAG
CGCCTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTG
ATGGGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGAC
GAAGCACAAGGCGGAGATGGAGAGTATACTGGTAAGAGAAAGGAAGGGAA
GGACAGGGGAAAGAAGAAGTCCTGTTGAGATGCTGATGCACGACTTCTCG
TCTATATTCCGCCCTGCATTTCCCGTAACAGGAGGTTGCCAGTGCCGTCT
CTTTCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCA
GTAGAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGAC
TGATCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAAC
GGTTCGAGGCAGCGATGAATGAGTGCTTGGAGGTGGGAAGTAAAAGGGAG
GGATGGAGGGAGGGGGAGAGAGATGAGGATAAAAGGAGGATTTTAATAGA
TTATTTTCATTTAGAAACATATTTGACTGAAAATTGGACAATTTGTCATC
TTGAAATATTCTCATTCTTGTCACCCTCTCCCCCTCCACCTACACAGATC
ATCAAGCGCGAGAAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACT
CAAGATTTTTGAGGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAGGAC
GGCAACGCATGACGAATTACCTTTTTTTGTAGATCCGGTTATAGGTGAAG
AGGATGCTTGTCCTTCCAACCCCCTCCTCCTGTCTCCTCCTTCTTTTACT
CCCAGGCCTTCGCCTTTCTGCGCCGGAAGAATTTCATCAAAGAAGTATTT
GCTCTTTCAAGATAACCAAGTGCGAGACATGCCTAGTACCAACAAAAATA
GAAATGAAGACGATGAGGAGAACGAGCAAGAGAGGAGAAATACAAAGAGG
CCGTGGGACAAAAAGTAACAACCACATGTACAATGGAAAGAACAATGTAC
AAGAGAGACAAAATTTCAGAATCATATCTCTTTTTTCTCCACGTCGTTGC
CCCTCCTAGCTAGTTTCCTCTCTCGACAAGGGCAGAGACCACACAAGAAT
ACCCGGGACACTCCTCACGACCCGTTGTCCCTTTATCATACCTTTCTAAC
CATAATAATACAATACCATCCACCCACCCACCCACAGACATAACTCCAGA
CAGACTCCTTCATCCACTTCCTTCCTTCCGTAACGTTCCTCTCGATGAAA
AAAATCAACGACTGCTCGGCCCAAGAGATCGTCCAGCTTCTCGGACTCCA
TCCACGTACGTTTGATGAAGGAAAAAAGTGATGGGGTGGGAGAGGCAAGA
AAGTCGACAGGGAGGAACATCCCTATCATTGAAACATTGGATTTCTTCTA
TCCTTTCTTGCATCATTCTCATCCATTCTCCTCCCTTGCCCAACGTTTGA
TCCCTCATCTTAGACCCTGAAGGTGGATTTTTTAAGGAAACGTACCGAAG
CGGCGCCACGCCAGGAGCTTCCAAAGGCCTCACCGACGAGACGGGCACCC
TCCTCCCCTCGTCCTCCATCCCTCTCTCCCCTCGTAATATCTGCACCTCC
ATCTTCTACCTCCTTACTAGCGAAGCTCCCATCGGGTACTGGCACATGAA
CAAGTCAAATATAATCCACTACTACCAAGGAGGTGATCCGCTCTCCTACT
TCCTCCTTCACCCTTCGACGGGTGCGTGGGAAAAGCACGTACTAGGCCCT
GATCTTGCGAAAGGACAGACATTGCAATTGATTGTGGATGGAGGAGTATG
GAAGGCGACGGTGTTGGAGCAGCAGGAGGAGAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_17:498525..501567+ >mRNA_6947 ID=mRNA_6947|Name=jgi.p|Nanoce1779_2|596877|organism=Nannochloropsis oceanica|type=CDS|length=4005bp|location=Sequence derived from alignment at scaffold_17:498525..501567+ (Nannochloropsis oceanica) ATGGTGCTCGCTTGCCATCTGAAGAGTATCCAAGTCGAGAAAAGAACAAG ACATCTCATGATTCCCAAACTAAACGCTCTTCTTACCGTCAGACAGGCCG CCATGTACCGTCGCTTGTTGTCTGACAACACGCGCAGGAGGATTACCGAT GTCTCCCTACGCTATCGATCCGCCCCACCTCCTTTGCCCCTCGTATGCTG CCGGGGCGCAGCCTCCTCCAAACCACCCCCCTCCGGCCGTCTACCCAGCA CAGGCAACGGGCTGATAGGCATGCCCCCTCCTCCCCGTTCCCCACCCTCT ACAGTAAAGTCCAAGCCCAAGATATCCCCTCCAGCGGCGGCCGCACGCGC GCCATCAATCATCGAGGTGGACGTCAAAAATTTTGTGGCCTTACTCAACT CCCCCGTGCCCGTCATCCTGGACTGTTACGCCACTTGGTGCGACCCTTGC AAGAAGCTCACTCCGGTGCTGGAGAAAATCGTGGGGAAGTATCCAGGTAG GGTTATTCTCGGAAAACTCGACGTGGACAAGCACCCAGAGCTGGCAGCGC AACTGAAAGTCAGCTCTCTCCCGGCCGTCTTCGGTCTCTGCGAGGGCAAG CTAGTCGATCGATTCGTAGGCATGCCCACCGAGCCCATTCTGGCGGGATT CCTGGACAAGATGCTCTCCATCATTCCACCTGCAGGCACCGATGAGGGAG TGGATGGAGCGCCTTCCGTGGCGGAGAGACAGGAGGCTGATCTGGCCATG GCCGATAGTTTGATGAAAGGAGGAAACAATGGGGGGAAAGAGGAGAAGGA CAAGGCCACCAAAGCGGGTGCGTTGTATAAACAAGTGTATGAGGAACTGG CAGCAGAGGAAACACCAGCGCCTTATTTGCAGGCGCGATGCTTGGCGGGT TTGGCGCGGTGTGCATTGATGGGAGGAGCAGCGGAGGAGGCGAGGCAAAT TGTGCAACTACTGAGGACGAAGCACAAGGCGGAGATGGAGAGTATACTGG AGGTTGCCAGTGCCGTCTCTTTCGCGGAAGTGGTTATGCAGGCGCCGCCA GAGGAAGGAGGGCTCTCAGTAGAGGACACATTAAAGAAGCTGCAGGGGGA TGTACTTAAGGCACCGACTGATCTGGAGGCCCGGTATCAGCTGGCGTTGA AGTGCTTCCAGCTGCAACGGTTCGAGGCAGCGATGAATGAGTGCTTGGAG ATCATCAAGCGCGAGAAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCT ACTCAAGATTTTTGAGGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAG GACGGCAACGCATGACGAATTACCTTTTTTTGTAGATGGTGCTCGCTTGC CATCTGAAGAGTATCCAAGTCGAGAAAAGAACAAGACATCTCATGATTCC CAAACTAAACGCTCTTCTTACCGTCAGACAGGCCGCCATGTACCGTCGCT TGTTGTCTGACAACACGCGCAGGAGGATTACCGATGTCTCCCTACGCTAT CGATCCGCCCCACCTCCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTC CTCCAAACCACCCCCCTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGA TAGGCATGCCCCCTCCTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAG CCCAAGATATCCCCTCCAGCGGCGGCCGCACGCGCGCCATCAATCATCGA GGTGGACGTCAAAAATTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCA TCCTGGACTGTTACGCCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCG GTGCTGGAGAAAATCGTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAA ACTCGACGTGGACAAGCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCT CTCTCCCGGCCGTCTTCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTC GTAGGCATGCCCACCGAGCCCATTCTGGCGGGATTCCTGGACAAGATGCT CTCCATCATTCCACCTGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTT CCGTGGCGGAGAGACAGGAGGCTGATCTGGCCATGGCCGATAGTTTGATG AAAGGAGGAAACAATGGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGC GGGTGCGTTGTATAAACAAGTGTATGAGGAACTGGCAGCAGAGGAAACAC CAGCGCCTTATTTGCAGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCA TTGATGGGAGGAGCAGCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAG GACGAAGCACAAGGCGGAGATGGAGAGTATACTGGAGGTTGCCAGTGCCG TCTCTTTCGCGGAAGTGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTC TCAGTAGAGGACACATTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACC GACTGATCTGGAGGCCCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGC AACGGTTCGAGGCAGCGATGAATGAGTGCTTGGAGATCATCAAGCGCGAG AAGGAGTGGAAGGAAGGGGCTGCCAAAGCCTTGCTACTCAAGATTTTTGA GGCCTTGGGCCCACAAAACGAAGTGACCAAGAAAGGACGGCAACGCATGA CGAATTACCTTTTTTTGTAGATGGTGCTCGCTTGCCATCTGAAGAGTATC CAAGTCGAGAAAAGAACAAGACATCTCATGATTCCCAAACTAAACGCTCT TCTTACCGTCAGACAGGCCGCCATGTACCGTCGCTTGTTGTCTGACAACA CGCGCAGGAGGATTACCGATGTCTCCCTACGCTATCGATCCGCCCCACCT CCTTTGCCCCTCGTATGCTGCCGGGGCGCAGCCTCCTCCAAACCACCCCC CTCCGGCCGTCTACCCAGCACAGGCAACGGGCTGATAGGCATGCCCCCTC CTCCCCGTTCCCCACCCTCTACAGTAAAGTCCAAGCCCAAGATATCCCCT CCAGCGGCGGCCGCACGCGCGCCATCAATCATCGAGGTGGACGTCAAAAA TTTTGTGGCCTTACTCAACTCCCCCGTGCCCGTCATCCTGGACTGTTACG CCACTTGGTGCGACCCTTGCAAGAAGCTCACTCCGGTGCTGGAGAAAATC GTGGGGAAGTATCCAGGTAGGGTTATTCTCGGAAAACTCGACGTGGACAA GCACCCAGAGCTGGCAGCGCAACTGAAAGTCAGCTCTCTCCCGGCCGTCT TCGGTCTCTGCGAGGGCAAGCTAGTCGATCGATTCGTAGGCATGCCCACC GAGCCCATTCTGGCGGGATTCCTGGACAAGATGCTCTCCATCATTCCACC TGCAGGCACCGATGAGGGAGTGGATGGAGCGCCTTCCGTGGCGGAGAGAC AGGAGGCTGATCTGGCCATGGCCGATAGTTTGATGAAAGGAGGAAACAAT GGGGGGAAAGAGGAGAAGGACAAGGCCACCAAAGCGGGTGCGTTGTATAA ACAAGTGTATGAGGAACTGGCAGCAGAGGAAACACCAGCGCCTTATTTGC AGGCGCGATGCTTGGCGGGTTTGGCGCGGTGTGCATTGATGGGAGGAGCA GCGGAGGAGGCGAGGCAAATTGTGCAACTACTGAGGACGAAGCACAAGGC GGAGATGGAGAGTATACTGGAGGTTGCCAGTGCCGTCTCTTTCGCGGAAG TGGTTATGCAGGCGCCGCCAGAGGAAGGAGGGCTCTCAGTAGAGGACACA TTAAAGAAGCTGCAGGGGGATGTACTTAAGGCACCGACTGATCTGGAGGC CCGGTATCAGCTGGCGTTGAAGTGCTTCCAGCTGCAACGGTTCGAGGCAG CGATGAATGAGTGCTTGGAGATCATCAAGCGCGAGAAGGAGTGGAAGGAA GGGGCTGCCAAAGCCTTGCTACTCAAGATTTTTGAGGCCTTGGGCCCACA AAACGAAGTGACCAAGAAAGGACGGCAACGCATGACGAATTACCTTTTTT TGTAG back to top
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