jgi.p|Nanoce1779_2|596874, mRNA_6946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596874
Unique NamemRNA_6946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1498
Alignment locationscaffold_17:496640..498137 +

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Properties
Property NameValue
TranscriptId596960
TrackFilteredModels2
ProteinId596874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:496640..498137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596874gene_6946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596874mRNA_6946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6946CDS_6946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6946 ID=mRNA_6946|Name=jgi.p|Nanoce1779_2|596874|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
CAGCACAAAAAGGATAAACGAGGATTTAATCGGTTTCTCTTCTGCCTTGA
ATGCGGTTTCCATTTTAGAAGAATCTTTTTTCAACGAGTGAAAATGCATC
CTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGATTAAGATAGACAGG
CTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTAAAAACCAATGGGC
CACACTTTGCCTTATATCTTTCTGCATTATCGCTGCGGAGTGGATTTTAA
GTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAGTTTTGCTATGAGC
GATGTGGCTCTCGATCCGGCCGATAAGTGGATTATGAATCTCCACAGATC
ATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAAGATTATT
ACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTATTTTGTC
GAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGGGTGCTAA
TACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTGGATGCCG
ATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATACAGCAAC
AACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGCCGGACTA
CTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAAGCAATCC
TAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAATTCAAAT
TACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGAAGGAACA
CGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGTGCCTCTG
CAGGCGCGTTAAAACTCATTGCTGATCAATACGGATATGTTCTTGTGGGA
CGCGTCCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTACTTCCCAA
CTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAATTGGGAA
TACTCCATCACAATGCGCAGCAGTCCGCGGATATTTACAACTACCTCATG
GACTACGCTGAATATACCCGAAGCGGAAATTTGCAGGCCGCTATGGCCTT
AGCTGCGAGTACTATTAAGAGCGCCCGCTTGGACTGCTTTAGTGGCATCG
TCGGATCGTAAGTCGGCCGTCTCCATGTATAAATGAGCCCCTACTACTAC
TGTCTGGCACTACTCTGTCAAGTTCCTCCGTCTTCATCTTTCTGAGTATT
TGACATGAACAAATGTTGGCTTTCTATGCATGCTTTTCTGGGATGTATTC
GATCCGATAGCGAAACAAATCCATTAAAGAAAAACGAAAAGATAAAAGTC
TCTTTATGAAGCATTGAGGGTGATGCTCTGTCCAAGGGCTTTCTCGCGAG
GAATCGCGCCGGAACCGAGCTTTAAAAGTGCAGAAGTCCCCCAAAATCGA
GCTGTCCACGCAGAAACCATCGCTGAAGCGTTGATACCTCATGACTAC
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protein sequence of jgi.p|Nanoce1779_2|596874

>mRNA_6946-protein ID=mRNA_6946-protein|Name=jgi.p|Nanoce1779_2|596874|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MHPEISTHKGKLEVIKIDRLFESCTFLYTRVKNQWATLCLISFCIIAAEW
ILSSGGSKPFMRKPSFAMSDVALDPADKWIMNLHRSSNANSTYNKSQGSQ
DYYLETIFAHIGETNRYFVEFGFNEKSYTSGGSGANTWDLHDKGWRGLLL
DADHENPAINLRKHFLYSNNIASIFETYLVPKEPDYLSCDMDSHDLFVWK
AILEAGYRPRLMSTEFNSNYPLNLTITEIDPSLKEHDAVSEFRFKQCAWG
ASAGALKLIADQYGYVLVGRVRNLDLFWLRKDLLPNSWIIPEFSWFFDNE
LGILHHNAQQSADIYNYLMDYAEYTRSGNLQAAMALAASTIKSARLDCFS
GIVGS*
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mRNA from alignment at scaffold_17:496640..498137+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6946 ID=mRNA_6946|Name=jgi.p|Nanoce1779_2|596874|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp|location=Sequence derived from alignment at scaffold_17:496640..498137+ (Nannochloropsis oceanica)
CAGCACAAAAAGGATAAACGAGGATTTAATCGGTTTCTCTTCTGCCTTGA
ATGCGGTTTCCATTTTAGAAGAATCTTTTTTCAACGAGTGAAAATGCATC
CTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGATTAAGATAGACAGG
CTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTAAAAACCAATGGGC
CACACTTTGCCTTATATCTTTCTGCATTATCGCTGCGGAGTGGATTTTAA
GTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAGTTTTGCTATGAGC
GATGTGGCTCTCGATCCGGCCGATAAGTGGATTATGAATCTCCACAGATC
ATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAAGATTATT
ACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTATTTTGTC
GAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGGGTGCTAA
TACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTGGATGCCG
ATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATACAGCAAC
AACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGCCGGACTA
CTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAAGCAATCC
TAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAATTCAAAT
TACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGAAGGAACA
CGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGTGCCTCTG
CAGGCGCGTTAAAACTCATTGCTGATCAATACGGATATGTTCTTGTGGGA
CGCGTCCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTACTTCCCAA
CTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAATTGGGAA
TACTCCATCACAATGCGCAGCAGTCCGCGGATATTTACAACTACCTCATG
GACTACGCTGAATATACCCGAAGCGGAAATTTGCAGGCCGCTATGGCCTT
AGCTGCGAGTACTATTAAGAGCGCCCGCTTGGACTGCTTTAGTGGCATCG
TCGGATCGTAAGTCGGCCGTCTCCATGTATAAATGAGCCCCTACTACTAC
TGTCTGGCACTACTCTGTCAAGTTCCTCCGTCTTCATCTTTCTGAGTATT
TGACATGAACAAATGTTGGCTTTCTATGCATGCTTTTCTGGGATGTATTC
GATCCGATAGCGAAACAAATCCATTAAAGAAAAACGAAAAGATAAAAGTC
TCTTTATGAAGCATTGAGGGTGATGCTCTGTCCAAGGGCTTTCTCGCGAG
GAATCGCGCCGGAACCGAGCTTTAAAAGTGCAGAAGTCCCCCAAAATCGA
GCTGTCCACGCAGAAACCATCGCTGAAGCGTTGATACCTCATGACTAC
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Coding sequence (CDS) from alignment at scaffold_17:496640..498137+

>mRNA_6946 ID=mRNA_6946|Name=jgi.p|Nanoce1779_2|596874|organism=Nannochloropsis oceanica|type=CDS|length=1068bp|location=Sequence derived from alignment at scaffold_17:496640..498137+ (Nannochloropsis oceanica)
ATGCATCCTGAAATCTCAACTCACAAAGGAAAATTGGAGGTGATTAAGAT
AGACAGGCTCTTCGAAAGCTGCACTTTTTTGTACACTAGAGTTAAAAACC
AATGGGCCACACTTTGCCTTATATCTTTCTGCATTATCGCTGCGGAGTGG
ATTTTAAGTTCTGGCGGCAGTAAGCCATTCATGAGAAAGCCTAGTTTTGC
TATGAGCGATGTGGCTCTCGATCCGGCCGATAAGTGGATTATGAATCTCC
ACAGATCATCCAATGCGAATTCGACCTACAACAAGAGTCAAGGGTCCCAA
GATTATTACCTGGAAACTATTTTTGCACACATTGGGGAGACGAATAGGTA
TTTTGTCGAATTCGGTTTCAATGAGAAGTCATACACAAGCGGCGGCTCGG
GTGCTAATACCTGGGACCTCCACGATAAAGGGTGGCGAGGACTGCTGTTG
GATGCCGATCATGAAAATCCGGCAATTAACCTTCGGAAGCACTTCCTATA
CAGCAACAACATCGCCAGTATATTTGAAACCTACCTCGTACCAAAAGAGC
CGGACTACTTATCGTGTGACATGGACAGCCATGATCTCTTTGTTTGGAAA
GCAATCCTAGAAGCGGGTTATCGACCCCGGCTTATGTCCACGGAATTCAA
TTCAAATTACCCACTCAACCTGACGATTACAGAAATTGATCCCTCTTTGA
AGGAACACGATGCCGTATCTGAATTTCGCTTCAAACAATGCGCCTGGGGT
GCCTCTGCAGGCGCGTTAAAACTCATTGCTGATCAATACGGATATGTTCT
TGTGGGACGCGTCCGCAATCTGGACCTTTTCTGGTTACGAAAGGATCTAC
TTCCCAACTCCTGGATAATTCCAGAATTTTCGTGGTTTTTTGACAACGAA
TTGGGAATACTCCATCACAATGCGCAGCAGTCCGCGGATATTTACAACTA
CCTCATGGACTACGCTGAATATACCCGAAGCGGAAATTTGCAGGCCGCTA
TGGCCTTAGCTGCGAGTACTATTAAGAGCGCCCGCTTGGACTGCTTTAGT
GGCATCGTCGGATCGTAA
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Synonyms
Publications