jgi.p|Nanoce1779_2|117277, mRNA_6945 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|117277
Unique NamemRNA_6945
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1083
Alignment locationscaffold_17:493059..494696 -

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Properties
Property NameValue
TranscriptId117363
TrackFilteredModels2
ProteinId117277
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:493059..494696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117277gene_6945Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|117277mRNA_6945-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6945CDS_6945Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6945 ID=mRNA_6945|Name=jgi.p|Nanoce1779_2|117277|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ACAGAAGCCACAGCATCACGCCACCTCTCGCTGATGGTGGCTTCTGTTCG
CCGCCGTCGCGCCCTCCCTCCGGACTCCGCCCTTGTCCTCCCTCTAGACG
CCACCCCCTCAACGCCCAAGGCCCTCGAGTATGGATTTGGCAACGGCGAA
GATGATGATGGAGAGGGGCGGTTGGAACAGTGCAAGGCGTGTGCCGTCTG
TGGGAAGCCCAATGGCAAGGCCTGCGTCAAATGCAACGGAGGTGCTTTCT
ACTGTGACAAGGACTGCCAAAGAAAACACTGGCCTGTACACAAGCTGGAA
TGTTGCTGGCCCGTCAAAAAGGCCAGCACACTGAATCCCCTTCATTCCTT
CTCCTCCACTTCTCTCTGCCCAAGCAATCCCTTCTACCGGTACCAACGCC
GACACCTCATCGCCACGGCCCCCATTAAGCCAGGGCAAGTTATCTTGGAG
GAATGTCCTGTGGTCTTTTGGCCTGTGATTACGAAGGCATGGGTGACTGA
CTCTCGATTGTGGCATCGGACAATGCCGGTGCTATCGCCCCTTCTCCTCC
CTCCTCTTCTCCTCCCTCTCTTCCTTCTTTCCCTGACCCCCTTTCTGTCG
TCCCCCTCCTCGGCATCCTCCGTTGCCTCAGTTTGAAAGAACAAGACCCT
CTCGCTTACCAGCGCCTTCTCCTTTCCCCCTCCTACGTGGAACACCTCCA
TCCCACCTATCTATGCACTGTCCTTGACTCCGTCGCGGCAGCCTTCCAGC
GGGCGCAGATAAAACAAGGAGAAGAGCAATGGTGCTTAATTCACGAGCTT
CCTCATAACAGCAGCAGCAGCAACAACAACAGTAGCAGCAGTAGCAGCAG
CTATAACAGTAGCAGCAGCAGCAGCAGCGATAACATTAGCAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACCACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACGA
CAACAGCAGAAGCAGCGGCAGCAGCAACAACAACAACAATGACAGCAACA
AAAAATGCAAAAAGGGCAACAGCAAGGATAATC
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protein sequence of jgi.p|Nanoce1779_2|117277

>mRNA_6945-protein ID=mRNA_6945-protein|Name=jgi.p|Nanoce1779_2|117277|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MVASVRRRRALPPDSALVLPLDATPSTPKALEYGFGNGEDDDGEGRLEQC
KACAVCGKPNGKACVKCNGGAFYCDKDCQRKHWPVHKLECCWPVKKASTL
NPLHSFSSTSLCPSNPFYRYQRRHLIATAPIKPGQVILEECPVVFWPVIT
KAWVTDSRLWHRTMPVLSPLLLPPLLLPLFLLSLTPFLSSPSSASSVASV
*
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mRNA from alignment at scaffold_17:493059..494696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6945 ID=mRNA_6945|Name=jgi.p|Nanoce1779_2|117277|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp|location=Sequence derived from alignment at scaffold_17:493059..494696- (Nannochloropsis oceanica)
ACAGAAGCCACAGCATCACGCCACCTCTCGCTGATGGTGGCTTCTGTTCG
CCGCCGTCGCGCCCTCCCTCCGGACTCCGCCCTTGTCCTCCCTCTAGACG
CCACCCCCTCAACGCCCAAGGCCCTCGAGTATGGATTTGGCAACGGCGAA
GATGATGATGGAGAGGGGCGGTTGGAACAGTGCAAGGCGTGTGCCGTCTG
TGGGAAGCCCAATGGCAAGGCCTGCGTCAAATGCAACGGAGGTGCTTTCT
ACTGTGACAAGGACTGCCAAAGGTAAGTGAGTTGGGCCGTATGAAAGCAG
CACATCTTCATTCTTCTGATTATCAAGTGTATGAGGCACTTGTCCGTGGG
CCGCTTGTTACTTTACGATCTTACTGTCTCGTCTTCTCCTCCTTTTTTTC
TCCGTCATCTCAACTTACGCTCCCGCCCACCTCATCGTTTCTCTCTCCTT
CGCTCTTTCCTTTTTCCTATCCATCTGCGTCCTTCAGAAAACACTGGCCT
GTACACAAGCTGGAATGTTGCTGGCCCGTCAAAAAGGCCAGCACACTGAA
TCCCCTTCATTCCTTCTCCTCCACTTCTCTCTGCCCAAGCAATCCCTTCT
ACCGGTACCAACGCCGACACCTCATCGCCACGGCCCCCATTAAGCCAGGG
CAAGTTATCTTGGAGGAATGTCCTGTGGTCTTTTGGCCTGTGATTACGAA
GGCATGGGTGACTGACTCTCGATTGTGGCATCGGACAATGGTGAAAGGGG
GAAAGAGAGGAAAGGAGGAGGAAGAGGAGGAGGGTGAAGAAAAGGGGGAG
GAAAATGTATTGATAGGACCAGCACATTTGTACACACAATGTATTTGTTG
CATGTCCTCGATGAAGCATGGGCAAGGGGTTAAGTGCAAAAATTGTGGCT
TGGAGATGTGTAGCCCGATTTGCCACTATAGTGAGCAAATGGTCGAGAAG
CATGCCTTGCACGAATGTACCTTTGTCCAATCTCTTCTCTCCTCCTCATC
CTCCTCCCCATCCTCCTTTACCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCCCCTGCTGCACCCTCCCACGTCCAGCCGGTGCTATCGCCCCTTCT
CCTCCCTCCTCTTCTCCTCCCTCTCTTCCTTCTTTCCCTGACCCCCTTTC
TGTCGTCCCCCTCCTCGGCATCCTCCGTTGCCTCAGTTTGAAAGAACAAG
ACCCTCTCGCTTACCAGCGCCTTCTCCTTTCCCCCTCCTACGTGGAACAC
CTCCATCCCACCTATCTATGCACTGTCCTTGACTCCGTCGCGGCAGCCTT
CCAGCGGGCGCAGATAAAACAAGGAGAAGAGCAATGGTGCTTAATTCACG
AGCTTCCTCATAACAGCAGCAGCAGCAACAACAACAGTAGCAGCAGTAGC
AGCAGCTATAACAGTAGCAGCAGCAGCAGCAGCGATAACATTAGCAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACCACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACGACAACAGCAGAAGCAGCGGCAGCAGCAACAACAACAACAATGACAG
CAACAAAAAATGCAAAAAGGGCAACAGCAAGGATAATC
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Coding sequence (CDS) from alignment at scaffold_17:493059..494696-

>mRNA_6945 ID=mRNA_6945|Name=jgi.p|Nanoce1779_2|117277|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_17:493059..494696- (Nannochloropsis oceanica)
CCGGTGCTATCGCCCCTTCTCCTCCCTCCTCTTCTCCTCCCTCTCTTCCT
TCTTTCCCTGACCCCCTTTCTGTCGTCCCCCTCCTCGGCATCCTCCGTTG
CCTCAGTTTGAAAAACACTGGCCTGTACACAAGCTGGAATGTTGCTGGCC
CGTCAAAAAGGCCAGCACACTGAATCCCCTTCATTCCTTCTCCTCCACTT
CTCTCTGCCCAAGCAATCCCTTCTACCGGTACCAACGCCGACACCTCATC
GCCACGGCCCCCATTAAGCCAGGGCAAGTTATCTTGGAGGAATGTCCTGT
GGTCTTTTGGCCTGTGATTACGAAGGCATGGGTGACTGACTCTCGATTGT
GGCATCGGACAATGATGGTGGCTTCTGTTCGCCGCCGTCGCGCCCTCCCT
CCGGACTCCGCCCTTGTCCTCCCTCTAGACGCCACCCCCTCAACGCCCAA
GGCCCTCGAGTATGGATTTGGCAACGGCGAAGATGATGATGGAGAGGGGC
GGTTGGAACAGTGCAAGGCGTGTGCCGTCTGTGGGAAGCCCAATGGCAAG
GCCTGCGTCAAATGCAACGGAGGTGCTTTCTACTGTGACAAGGACTGCCA
AAGCCGGTGCTATCGCCCCTTCTCCTCCCTCCTCTTCTCCTCCCTCTCTT
CCTTCTTTCCCTGACCCCCTTTCTGTCGTCCCCCTCCTCGGCATCCTCCG
TTGCCTCAGTTTGAAAAACACTGGCCTGTACACAAGCTGGAATGTTGCTG
GCCCGTCAAAAAGGCCAGCACACTGAATCCCCTTCATTCCTTCTCCTCCA
CTTCTCTCTGCCCAAGCAATCCCTTCTACCGGTACCAACGCCGACACCTC
ATCGCCACGGCCCCCATTAAGCCAGGGCAAGTTATCTTGGAGGAATGTCC
TGTGGTCTTTTGGCCTGTGATTACGAAGGCATGGGTGACTGACTCTCGAT
TGTGGCATCGGACAATGATGGTGGCTTCTGTTCGCCGCCGTCGCGCCCTC
CCTCCGGACTCCGCCCTTGTCCTCCCTCTAGACGCCACCCCCTCAACGCC
CAAGGCCCTCGAGTATGGATTTGGCAACGGCGAAGATGATGATGGAGAGG
GGCGGTTGGAACAGTGCAAGGCGTGTGCCGTCTGTGGGAAGCCCAATGGC
AAGGCCTGCGTCAAATGCAACGGAGGTGCTTTCTACTGTGACAAGGACTG
CCAAAGCCGGTGCTATCGCCCCTTCTCCTCCCTCCTCTTCTCCTCCCTCT
CTTCCTTCTTTCCCTGACCCCCTTTCTGTCGTCCCCCTCCTCGGCATCCT
CCGTTGCCTCAGTTTGAAAAACACTGGCCTGTACACAAGCTGGAATGTTG
CTGGCCCGTCAAAAAGGCCAGCACACTGAATCCCCTTCATTCCTTCTCCT
CCACTTCTCTCTGCCCAAGCAATCCCTTCTACCGGTACCAACGCCGACAC
CTCATCGCCACGGCCCCCATTAAGCCAGGGCAAGTTATCTTGGAGGAATG
TCCTGTGGTCTTTTGGCCTGTGATTACGAAGGCATGGGTGACTGACTCTC
GATTGTGGCATCGGACAATGATGGTGGCTTCTGTTCGCCGCCGTCGCGCC
CTCCCTCCGGACTCCGCCCTTGTCCTCCCTCTAGACGCCACCCCCTCAAC
GCCCAAGGCCCTCGAGTATGGATTTGGCAACGGCGAAGATGATGATGGAG
AGGGGCGGTTGGAACAGTGCAAGGCGTGTGCCGTCTGTGGGAAGCCCAAT
GGCAAGGCCTGCGTCAAATGCAACGGAGGTGCTTTCTACTGTGACAAGGA
CTGCCAAAG
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Synonyms
Publications