jgi.p|Nanoce1779_2|596868, mRNA_6944 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596868
Unique NamemRNA_6944
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length978
Alignment locationscaffold_17:490990..491967 -

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Properties
Property NameValue
TranscriptId596954
TrackFilteredModels2
ProteinId596868
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:490990..491967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596868gene_6944Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596868mRNA_6944-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6944CDS_6944Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6944 ID=mRNA_6944|Name=jgi.p|Nanoce1779_2|596868|organism=Nannochloropsis oceanica|type=mRNA|length=978bp
AAAGAGAGGGTGGGTACAGCGATACAGATCGAGAAGGAGGAGGAGAAGGA
GGAGGAGGAGAAAGACATGGAGGGGATGGAGGAGGGGAGGAGGGGGTGTT
TGAAGATAAGTAGTCAGAAGTGTAGTTGGAGGGCAAATGAGAGGAGGGAA
AGAAATGAGAGGAGGAGGTGGGAGGCGCTGTTGGAATGGAGCGAGTGGGA
TGAGCGGCTGATTGCCCTGGCCCCGGTGATTTTCTCCTCTATTCAGGCCA
CGCACCAGACCCTGGACGAGCAATCCACGGCCTTGATCTTGGGGGAATGG
GCACTGGCGGTCCACCGGCAGGCCTATCGGAGGCGGGAGGATGCACGTGA
GATGCTAGGAGGGAGGGGGAAAATATATGGTATAGAGGAGGGTCCACACA
AAAGAGCAATGCAGGAGGAGGCGAAGCGGTTATTGAAGAAGGCAGAGGAA
TCTTTGTCCTCTGGTCAAGGGGCGTATTTTCGGCGACAAATTGTGTTGGA
ACGGGAGGTGAGAGAGGCCCTGAATGCCGACGATCCTGCAGCGGAAATGC
TGTTGATGGGAGGGAAAACACGCGAGATAGTGATGCCAGCGTCCTTGACA
GGGCCGGGCAACGGGAATGGTCAGAGACTTATGTACATGGCCAACCACCC
GACCAACGTTGTGGGGAGGGGACAAGGATGTGAGGTAGGGGCGGAGGGAG
GGAATGAAAAGCAGAAGGAAGAGCAATTGGAGACGCTGGTGCAGATGGCC
TTGGCAGGCCAGGAAGGAAGGTCGCATGTAATCTCCGACATGTGGACAGT
AGCGACAGTCAAGGGGCGACCCAAAATGAAAAGTAAGGAGGCAGTGGGTA
CAGCCGCAAATGTTTTGAAGGGAAGGGTAGGATTAGAAGCAGCAGAAGCA
GCAGCAGGAGGAGCTGCGACAGGGGCGACAGGGACGCTAAGAAAAAGACC
AGCAGGGAAGGGTAAAGTAGAATGAACG
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protein sequence of jgi.p|Nanoce1779_2|596868

>mRNA_6944-protein ID=mRNA_6944-protein|Name=jgi.p|Nanoce1779_2|596868|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MEGMEEGRRGCLKISSQKCSWRANERRERNERRRWEALLEWSEWDERLIA
LAPVIFSSIQATHQTLDEQSTALILGEWALAVHRQAYRRREDAREMLGGR
GKIYGIEEGPHKRAMQEEAKRLLKKAEESLSSGQGAYFRRQIVLEREVRE
ALNADDPAAEMLLMGGKTREIVMPASLTGPGNGNGQRLMYMANHPTNVVG
RGQGCEVGAEGGNEKQKEEQLETLVQMALAGQEGRSHVISDMWTVATVKG
RPKMKSKEAVGTAANVLKGRVGLEAAEAAAGGAATGATGTLRKRPAGKGK
V
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mRNA from alignment at scaffold_17:490990..491967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6944 ID=mRNA_6944|Name=jgi.p|Nanoce1779_2|596868|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at scaffold_17:490990..491967- (Nannochloropsis oceanica)
AAAGAGAGGGTGGGTACAGCGATACAGATCGAGAAGGAGGAGGAGAAGGA
GGAGGAGGAGAAAGACATGGAGGGGATGGAGGAGGGGAGGAGGGGGTGTT
TGAAGATAAGTAGTCAGAAGTGTAGTTGGAGGGCAAATGAGAGGAGGGAA
AGAAATGAGAGGAGGAGGTGGGAGGCGCTGTTGGAATGGAGCGAGTGGGA
TGAGCGGCTGATTGCCCTGGCCCCGGTGATTTTCTCCTCTATTCAGGCCA
CGCACCAGACCCTGGACGAGCAATCCACGGCCTTGATCTTGGGGGAATGG
GCACTGGCGGTCCACCGGCAGGCCTATCGGAGGCGGGAGGATGCACGTGA
GATGCTAGGAGGGAGGGGGAAAATATATGGTATAGAGGAGGGTCCACACA
AAAGAGCAATGCAGGAGGAGGCGAAGCGGTTATTGAAGAAGGCAGAGGAA
TCTTTGTCCTCTGGTCAAGGGGCGTATTTTCGGCGACAAATTGTGTTGGA
ACGGGAGGTGAGAGAGGCCCTGAATGCCGACGATCCTGCAGCGGAAATGC
TGTTGATGGGAGGGAAAACACGCGAGATAGTGATGCCAGCGTCCTTGACA
GGGCCGGGCAACGGGAATGGTCAGAGACTTATGTACATGGCCAACCACCC
GACCAACGTTGTGGGGAGGGGACAAGGATGTGAGGTAGGGGCGGAGGGAG
GGAATGAAAAGCAGAAGGAAGAGCAATTGGAGACGCTGGTGCAGATGGCC
TTGGCAGGCCAGGAAGGAAGGTCGCATGTAATCTCCGACATGTGGACAGT
AGCGACAGTCAAGGGGCGACCCAAAATGAAAAGTAAGGAGGCAGTGGGTA
CAGCCGCAAATGTTTTGAAGGGAAGGGTAGGATTAGAAGCAGCAGAAGCA
GCAGCAGGAGGAGCTGCGACAGGGGCGACAGGGACGCTAAGAAAAAGACC
AGCAGGGAAGGGTAAAGTAGAATGAACG
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Coding sequence (CDS) from alignment at scaffold_17:490990..491967-

>mRNA_6944 ID=mRNA_6944|Name=jgi.p|Nanoce1779_2|596868|organism=Nannochloropsis oceanica|type=CDS|length=904bp|location=Sequence derived from alignment at scaffold_17:490990..491967- (Nannochloropsis oceanica)
ATGGAGGGGATGGAGGAGGGGAGGAGGGGGTGTTTGAAGATAAGTAGTCA
GAAGTGTAGTTGGAGGGCAAATGAGAGGAGGGAAAGAAATGAGAGGAGGA
GGTGGGAGGCGCTGTTGGAATGGAGCGAGTGGGATGAGCGGCTGATTGCC
CTGGCCCCGGTGATTTTCTCCTCTATTCAGGCCACGCACCAGACCCTGGA
CGAGCAATCCACGGCCTTGATCTTGGGGGAATGGGCACTGGCGGTCCACC
GGCAGGCCTATCGGAGGCGGGAGGATGCACGTGAGATGCTAGGAGGGAGG
GGGAAAATATATGGTATAGAGGAGGGTCCACACAAAAGAGCAATGCAGGA
GGAGGCGAAGCGGTTATTGAAGAAGGCAGAGGAATCTTTGTCCTCTGGTC
AAGGGGCGTATTTTCGGCGACAAATTGTGTTGGAACGGGAGGTGAGAGAG
GCCCTGAATGCCGACGATCCTGCAGCGGAAATGCTGTTGATGGGAGGGAA
AACACGCGAGATAGTGATGCCAGCGTCCTTGACAGGGCCGGGCAACGGGA
ATGGTCAGAGACTTATGTACATGGCCAACCACCCGACCAACGTTGTGGGG
AGGGGACAAGGATGTGAGGTAGGGGCGGAGGGAGGGAATGAAAAGCAGAA
GGAAGAGCAATTGGAGACGCTGGTGCAGATGGCCTTGGCAGGCCAGGAAG
GAAGGTCGCATGTAATCTCCGACATGTGGACAGTAGCGACAGTCAAGGGG
CGACCCAAAATGAAAAGTAAGGAGGCAGTGGGTACAGCCGCAAATGTTTT
GAAGGGAAGGGTAGGATTAGAAGCAGCAGAAGCAGCAGCAGGAGGAGCTG
CGACAGGGGCGACAGGGACGCTAAGAAAAAGACCAGCAGGGAAGGGTAAA
GTAG
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Synonyms
Publications