Properties
| Property Name | Value |
|---|
| TranscriptId | 558025 |
| Track | FilteredModels2 |
| ProteinId | 557939 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:489201..490550 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6943 ID=mRNA_6943|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ACAGGGCTGCATATCATCATGTCGTTGCCATCGTTGTCCCGACCATCTCC
GATATTGCCACCACGCACCAAAATCGAGGCCATGTCGGCCGAGGTCGTCG
ACAGCAACCCCTACAGCCGGCTCATGGCCCTCAAGCGCATGGGTGTCGTC
AAGGAGTACGAACGCATCCGCGACTTGTCCATCCTGATCGTAGGACTCGG
AGGCATCGGCTCCGTGGCCGCCGAAATGCTCACTCGGTGCGGCATCGGCA
AGCTCCTCCTCTTCGACTACGACACCGTTGAGCTTGCGAATATGAACCGC
CTCTTCTTCCGGCCCGAGCAAGCAGGTCAAACAAAATCAGCTGCCGCCAA
GGAAACTCTCGAAAAAATCAATCCTGATGTCTTCATCGAAGAGCATAGAT
ACAACATTACCGAAACAGCGCACTTCGACCACTTCCTCGATCGCCTCGCC
AACGGCAGTCTCACCAACAACTCCTCTGTCGATCTCGTCCTGTCTTGCGT
CGATAACTACGCGGCCCGCACAACAATCAACCAGGCTTGCAACGAACTCA
ATATCGTTTGGATGGAATCAGGTGTAAGCGAAGACGCAGTCTCGGGGCAC
ATTCAAACCCTTCTCCCCGGCCGCAACGCCTGCTTTGAATGCCTCCCCCC
CCTCATCGTCGCCAGTGGCATCGACGAAGGGACGCTGCGACGGGATGGTG
TGTGTGCTGCCTCCCTTCCTACCACTATGGGTATTATTGCAGGATTCCTA
GTCCAAAATTCGCTTAAGTATTTACTAAACTTTGGGGAGGTCTCTTATTA
TTTGGGATACAGTGCTTTGTTGGATCATTTCCCGAGGGAGGTGTTGATGC
CCAACCCGGACTGTGGGGATGTTTGGTGTCGGAAGCGGCAGGAGGAATGG
AGGGGCCGTTGGAAGGCAAGAGAGGGGAAGAGGGGGGGAGAAGGAGAAAT
GGGGAAGGAGCACGAGGTGGTGCATGAGGAGAATGAGTGGGGGATTGAGG
TTGTCGATGAGGAAGGAGAGGGAGAGGAGGGCATGAAAGGAGAAGGCGGA
GATACTGCTGCTTCTGCTTCCCTAGTTGGACCTACGATGGGTAGCAGCGA
CGGCAAGAGAGGGGAGAAAAAGGGTTTGGACAAGGTGAGATTGGAGGATT
TGGCGGCACAGCTGCAGTCGCTGCAATCGTCATGAGAACGGCAAATGGCA
CAGACGATGCCCGTGTGATGCATTGTGAAGATATATCGGCCTTGAAAAAG
GGGGCATTAAATAAGGCTAAGCTAAAGCACTTAACATTACCACCACCGTC
AGCACCAGCAGTAGCATTGTTCATTCGCAACAAAGAGAAGAACGCGGCGT back to topprotein sequence of jgi.p|Nanoce1779_2|557939 >mRNA_6943-protein ID=mRNA_6943-protein|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MSLPSLSRPSPILPPRTKIEAMSAEVVDSNPYSRLMALKRMGVVKEYERI
RDLSILIVGLGGIGSVAAEMLTRCGIGKLLLFDYDTVELANMNRLFFRPE
QAGQTKSAAAKETLEKINPDVFIEEHRYNITETAHFDHFLDRLANGSLTN
NSSVDLVLSCVDNYAARTTINQACNELNIVWMESGVSEDAVSGHIQTLLP
GRNACFECLPPLIVASGIDEGTLRRDGVCAASLPTTMGIIAGFLVQNSLK
YLLNFGEVSYYLGYSALLDHFPREVLMPNPDCGDVWCRKRQEEWRGRWKA
REGKRGGEGEMGKEHEVVHEENEWGIEVVDEEGEGEEGMKGEGGDTAASA
SLVGPTMGSSDGKRGEKKGLDKVRLEDLAAQLQSLQSS* back to topmRNA from alignment at scaffold_17:489201..490550- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6943 ID=mRNA_6943|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_17:489201..490550- (Nannochloropsis oceanica)
ACAGGGCTGCATATCATCATGTCGTTGCCATCGTTGTCCCGACCATCTCC
GATATTGCCACCACGCACCAAAATCGAGGCCATGTCGGCCGAGGTCGTCG
ACAGCAACCCCTACAGCCGGCTCATGGCCCTCAAGCGCATGGGTGTCGTC
AAGGAGTACGAACGCATCCGCGACTTGTCCATCCTGATCGTAGGACTCGG
AGGCATCGGCTCCGTGGCCGCCGAAATGCTCACTCGGTGCGGCATCGGCA
AGCTCCTCCTCTTCGACTACGACACCGTTGAGCTTGCGAATATGAACCGC
CTCTTCTTCCGGCCCGAGCAAGCAGGTCAAACAAAATCAGCTGCCGCCAA
GGAAACTCTCGAAAAAATCAATCCTGATGTCTTCATCGAAGAGCATAGAT
ACAACATTACCGAAACAGCGCACTTCGACCACTTCCTCGATCGCCTCGCC
AACGGCAGTCTCACCAACAACTCCTCTGTCGATCTCGTCCTGTCTTGCGT
CGATAACTACGCGGCCCGCACAACAATCAACCAGGCTTGCAACGAACTCA
ATATCGTTTGGATGGAATCAGGTGTAAGCGAAGACGCAGTCTCGGGGCAC
ATTCAAACCCTTCTCCCCGGCCGCAACGCCTGCTTTGAATGCCTCCCCCC
CCTCATCGTCGCCAGTGGCATCGACGAAGGGACGCTGCGACGGGATGGTG
TGTGTGCTGCCTCCCTTCCTACCACTATGGGTATTATTGCAGGATTCCTA
GTCCAAAATTCGCTTAAGTATTTACTAAACTTTGGGGAGGTCTCTTATTA
TTTGGGATACAGTGCTTTGTTGGATCATTTCCCGAGGGAGGTGTTGATGC
CCAACCCGGACTGTGGGGATGTTTGGTGTCGGAAGCGGCAGGAGGAATGG
AGGGGCCGTTGGAAGGCAAGAGAGGGGAAGAGGGGGGGAGAAGGAGAAAT
GGGGAAGGAGCACGAGGTGGTGCATGAGGAGAATGAGTGGGGGATTGAGG
TTGTCGATGAGGAAGGAGAGGGAGAGGAGGGCATGAAAGGAGAAGGCGGA
GATACTGCTGCTTCTGCTTCCCTAGTTGGACCTACGATGGGTAGCAGCGA
CGGCAAGAGAGGGGAGAAAAAGGGTTTGGACAAGGTGAGATTGGAGGATT
TGGCGGCACAGCTGCAGTCGCTGCAATCGTCATGAGAACGGCAAATGGCA
CAGACGATGCCCGTGTGATGCATTGTGAAGATATATCGGCCTTGAAAAAG
GGGGCATTAAATAAGGCTAAGCTAAAGCACTTAACATTACCACCACCGTC
AGCACCAGCAGTAGCATTGTTCATTCGCAACAAAGAGAAGAACGCGGCGT
back to topCoding sequence (CDS) from alignment at scaffold_17:489201..490550- >mRNA_6943 ID=mRNA_6943|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_17:489201..490550- (Nannochloropsis oceanica)
ATGTCGTTGCCATCGTTGTCCCGACCATCTCCGATATTGCCACCACGCAC
CAAAATCGAGGCCATGTCGGCCGAGGTCGTCGACAGCAACCCCTACAGCC
GGCTCATGGCCCTCAAGCGCATGGGTGTCGTCAAGGAGTACGAACGCATC
CGCGACTTGTCCATCCTGATCGTAGGACTCGGAGGCATCGGCTCCGTGGC
CGCCGAAATGCTCACTCGGTGCGGCATCGGCAAGCTCCTCCTCTTCGACT
ACGACACCGTTGAGCTTGCGAATATGAACCGCCTCTTCTTCCGGCCCGAG
CAAGCAGGTCAAACAAAATCAGCTGCCGCCAAGGAAACTCTCGAAAAAAT
CAATCCTGATGTCTTCATCGAAGAGCATAGATACAACATTACCGAAACAG
CGCACTTCGACCACTTCCTCGATCGCCTCGCCAACGGCAGTCTCACCAAC
AACTCCTCTGTCGATCTCGTCCTGTCTTGCGTCGATAACTACGCGGCCCG
CACAACAATCAACCAGGCTTGCAACGAACTCAATATCGTTTGGATGGAAT
CAGGTGTAAGCGAAGACGCAGTCTCGGGGCACATTCAAACCCTTCTCCCC
GGCCGCAACGCCTGCTTTGAATGCCTCCCCCCCCTCATCGTCGCCAGTGG
CATCGACGAAGGGACGCTGCGACGGGATGGTGTGTGTGCTGCCTCCCTTC
CTACCACTATGGGTATTATTGCAGGATTCCTAGTCCAAAATTCGCTTAAG
TATTTACTAAACTTTGGGGAGGTCTCTTATTATTTGGGATACAGTGCTTT
GTTGGATCATTTCCCGAGGGAGGTGTTGATGCCCAACCCGGACTGTGGGG
ATGTTTGGTGTCGGAAGCGGCAGGAGGAATGGAGGGGCCGTTGGAAGGCA
AGAGAGGGGAAGAGGGGGGGAGAAGGAGAAATGGGGAAGGAGCACGAGGT
GGTGCATGAGGAGAATGAGTGGGGGATTGAGGTTGTCGATGAGGAAGGAG
AGGGAGAGGAGGGCATGAAAGGAGAAGGCGGAGATACTGCTGCTTCTGCT
TCCCTAGTTGGACCTACGATGGGTAGCAGCGACGGCAAGAGAGGGGAGAA
AAAGGGTTTGGACAAGGTGAGATTGGAGGATTTGGCGGCACAGCTGCAGT
CGCTGCAATCGTCATGA back to top
|