jgi.p|Nanoce1779_2|557939, mRNA_6943 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557939
Unique NamemRNA_6943
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1350
Alignment locationscaffold_17:489201..490550 -

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Properties
Property NameValue
TranscriptId558025
TrackFilteredModels2
ProteinId557939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:489201..490550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557939gene_6943Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557939mRNA_6943-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6943CDS_6943Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6943 ID=mRNA_6943|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp
ACAGGGCTGCATATCATCATGTCGTTGCCATCGTTGTCCCGACCATCTCC
GATATTGCCACCACGCACCAAAATCGAGGCCATGTCGGCCGAGGTCGTCG
ACAGCAACCCCTACAGCCGGCTCATGGCCCTCAAGCGCATGGGTGTCGTC
AAGGAGTACGAACGCATCCGCGACTTGTCCATCCTGATCGTAGGACTCGG
AGGCATCGGCTCCGTGGCCGCCGAAATGCTCACTCGGTGCGGCATCGGCA
AGCTCCTCCTCTTCGACTACGACACCGTTGAGCTTGCGAATATGAACCGC
CTCTTCTTCCGGCCCGAGCAAGCAGGTCAAACAAAATCAGCTGCCGCCAA
GGAAACTCTCGAAAAAATCAATCCTGATGTCTTCATCGAAGAGCATAGAT
ACAACATTACCGAAACAGCGCACTTCGACCACTTCCTCGATCGCCTCGCC
AACGGCAGTCTCACCAACAACTCCTCTGTCGATCTCGTCCTGTCTTGCGT
CGATAACTACGCGGCCCGCACAACAATCAACCAGGCTTGCAACGAACTCA
ATATCGTTTGGATGGAATCAGGTGTAAGCGAAGACGCAGTCTCGGGGCAC
ATTCAAACCCTTCTCCCCGGCCGCAACGCCTGCTTTGAATGCCTCCCCCC
CCTCATCGTCGCCAGTGGCATCGACGAAGGGACGCTGCGACGGGATGGTG
TGTGTGCTGCCTCCCTTCCTACCACTATGGGTATTATTGCAGGATTCCTA
GTCCAAAATTCGCTTAAGTATTTACTAAACTTTGGGGAGGTCTCTTATTA
TTTGGGATACAGTGCTTTGTTGGATCATTTCCCGAGGGAGGTGTTGATGC
CCAACCCGGACTGTGGGGATGTTTGGTGTCGGAAGCGGCAGGAGGAATGG
AGGGGCCGTTGGAAGGCAAGAGAGGGGAAGAGGGGGGGAGAAGGAGAAAT
GGGGAAGGAGCACGAGGTGGTGCATGAGGAGAATGAGTGGGGGATTGAGG
TTGTCGATGAGGAAGGAGAGGGAGAGGAGGGCATGAAAGGAGAAGGCGGA
GATACTGCTGCTTCTGCTTCCCTAGTTGGACCTACGATGGGTAGCAGCGA
CGGCAAGAGAGGGGAGAAAAAGGGTTTGGACAAGGTGAGATTGGAGGATT
TGGCGGCACAGCTGCAGTCGCTGCAATCGTCATGAGAACGGCAAATGGCA
CAGACGATGCCCGTGTGATGCATTGTGAAGATATATCGGCCTTGAAAAAG
GGGGCATTAAATAAGGCTAAGCTAAAGCACTTAACATTACCACCACCGTC
AGCACCAGCAGTAGCATTGTTCATTCGCAACAAAGAGAAGAACGCGGCGT
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protein sequence of jgi.p|Nanoce1779_2|557939

>mRNA_6943-protein ID=mRNA_6943-protein|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MSLPSLSRPSPILPPRTKIEAMSAEVVDSNPYSRLMALKRMGVVKEYERI
RDLSILIVGLGGIGSVAAEMLTRCGIGKLLLFDYDTVELANMNRLFFRPE
QAGQTKSAAAKETLEKINPDVFIEEHRYNITETAHFDHFLDRLANGSLTN
NSSVDLVLSCVDNYAARTTINQACNELNIVWMESGVSEDAVSGHIQTLLP
GRNACFECLPPLIVASGIDEGTLRRDGVCAASLPTTMGIIAGFLVQNSLK
YLLNFGEVSYYLGYSALLDHFPREVLMPNPDCGDVWCRKRQEEWRGRWKA
REGKRGGEGEMGKEHEVVHEENEWGIEVVDEEGEGEEGMKGEGGDTAASA
SLVGPTMGSSDGKRGEKKGLDKVRLEDLAAQLQSLQSS*
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mRNA from alignment at scaffold_17:489201..490550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6943 ID=mRNA_6943|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_17:489201..490550- (Nannochloropsis oceanica)
ACAGGGCTGCATATCATCATGTCGTTGCCATCGTTGTCCCGACCATCTCC
GATATTGCCACCACGCACCAAAATCGAGGCCATGTCGGCCGAGGTCGTCG
ACAGCAACCCCTACAGCCGGCTCATGGCCCTCAAGCGCATGGGTGTCGTC
AAGGAGTACGAACGCATCCGCGACTTGTCCATCCTGATCGTAGGACTCGG
AGGCATCGGCTCCGTGGCCGCCGAAATGCTCACTCGGTGCGGCATCGGCA
AGCTCCTCCTCTTCGACTACGACACCGTTGAGCTTGCGAATATGAACCGC
CTCTTCTTCCGGCCCGAGCAAGCAGGTCAAACAAAATCAGCTGCCGCCAA
GGAAACTCTCGAAAAAATCAATCCTGATGTCTTCATCGAAGAGCATAGAT
ACAACATTACCGAAACAGCGCACTTCGACCACTTCCTCGATCGCCTCGCC
AACGGCAGTCTCACCAACAACTCCTCTGTCGATCTCGTCCTGTCTTGCGT
CGATAACTACGCGGCCCGCACAACAATCAACCAGGCTTGCAACGAACTCA
ATATCGTTTGGATGGAATCAGGTGTAAGCGAAGACGCAGTCTCGGGGCAC
ATTCAAACCCTTCTCCCCGGCCGCAACGCCTGCTTTGAATGCCTCCCCCC
CCTCATCGTCGCCAGTGGCATCGACGAAGGGACGCTGCGACGGGATGGTG
TGTGTGCTGCCTCCCTTCCTACCACTATGGGTATTATTGCAGGATTCCTA
GTCCAAAATTCGCTTAAGTATTTACTAAACTTTGGGGAGGTCTCTTATTA
TTTGGGATACAGTGCTTTGTTGGATCATTTCCCGAGGGAGGTGTTGATGC
CCAACCCGGACTGTGGGGATGTTTGGTGTCGGAAGCGGCAGGAGGAATGG
AGGGGCCGTTGGAAGGCAAGAGAGGGGAAGAGGGGGGGAGAAGGAGAAAT
GGGGAAGGAGCACGAGGTGGTGCATGAGGAGAATGAGTGGGGGATTGAGG
TTGTCGATGAGGAAGGAGAGGGAGAGGAGGGCATGAAAGGAGAAGGCGGA
GATACTGCTGCTTCTGCTTCCCTAGTTGGACCTACGATGGGTAGCAGCGA
CGGCAAGAGAGGGGAGAAAAAGGGTTTGGACAAGGTGAGATTGGAGGATT
TGGCGGCACAGCTGCAGTCGCTGCAATCGTCATGAGAACGGCAAATGGCA
CAGACGATGCCCGTGTGATGCATTGTGAAGATATATCGGCCTTGAAAAAG
GGGGCATTAAATAAGGCTAAGCTAAAGCACTTAACATTACCACCACCGTC
AGCACCAGCAGTAGCATTGTTCATTCGCAACAAAGAGAAGAACGCGGCGT
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Coding sequence (CDS) from alignment at scaffold_17:489201..490550-

>mRNA_6943 ID=mRNA_6943|Name=jgi.p|Nanoce1779_2|557939|organism=Nannochloropsis oceanica|type=CDS|length=1167bp|location=Sequence derived from alignment at scaffold_17:489201..490550- (Nannochloropsis oceanica)
ATGTCGTTGCCATCGTTGTCCCGACCATCTCCGATATTGCCACCACGCAC
CAAAATCGAGGCCATGTCGGCCGAGGTCGTCGACAGCAACCCCTACAGCC
GGCTCATGGCCCTCAAGCGCATGGGTGTCGTCAAGGAGTACGAACGCATC
CGCGACTTGTCCATCCTGATCGTAGGACTCGGAGGCATCGGCTCCGTGGC
CGCCGAAATGCTCACTCGGTGCGGCATCGGCAAGCTCCTCCTCTTCGACT
ACGACACCGTTGAGCTTGCGAATATGAACCGCCTCTTCTTCCGGCCCGAG
CAAGCAGGTCAAACAAAATCAGCTGCCGCCAAGGAAACTCTCGAAAAAAT
CAATCCTGATGTCTTCATCGAAGAGCATAGATACAACATTACCGAAACAG
CGCACTTCGACCACTTCCTCGATCGCCTCGCCAACGGCAGTCTCACCAAC
AACTCCTCTGTCGATCTCGTCCTGTCTTGCGTCGATAACTACGCGGCCCG
CACAACAATCAACCAGGCTTGCAACGAACTCAATATCGTTTGGATGGAAT
CAGGTGTAAGCGAAGACGCAGTCTCGGGGCACATTCAAACCCTTCTCCCC
GGCCGCAACGCCTGCTTTGAATGCCTCCCCCCCCTCATCGTCGCCAGTGG
CATCGACGAAGGGACGCTGCGACGGGATGGTGTGTGTGCTGCCTCCCTTC
CTACCACTATGGGTATTATTGCAGGATTCCTAGTCCAAAATTCGCTTAAG
TATTTACTAAACTTTGGGGAGGTCTCTTATTATTTGGGATACAGTGCTTT
GTTGGATCATTTCCCGAGGGAGGTGTTGATGCCCAACCCGGACTGTGGGG
ATGTTTGGTGTCGGAAGCGGCAGGAGGAATGGAGGGGCCGTTGGAAGGCA
AGAGAGGGGAAGAGGGGGGGAGAAGGAGAAATGGGGAAGGAGCACGAGGT
GGTGCATGAGGAGAATGAGTGGGGGATTGAGGTTGTCGATGAGGAAGGAG
AGGGAGAGGAGGGCATGAAAGGAGAAGGCGGAGATACTGCTGCTTCTGCT
TCCCTAGTTGGACCTACGATGGGTAGCAGCGACGGCAAGAGAGGGGAGAA
AAAGGGTTTGGACAAGGTGAGATTGGAGGATTTGGCGGCACAGCTGCAGT
CGCTGCAATCGTCATGA
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Synonyms
Publications