jgi.p|Nanoce1779_2|596863, mRNA_6942 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596863
Unique Name	mRNA_6942
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1502
Alignment location	scaffold_17:486863..488928 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596949
Track	FilteredModels2
ProteinId	596863

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:486863..488928 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596863	gene_6942	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596863	mRNA_6942-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6942	CDS_6942	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:486863..488928+
coding sequence from alignment at scaffold_17:486863..488928+

mRNA sequence

>mRNA_6942 ID=mRNA_6942|Name=jgi.p|Nanoce1779_2|596863|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp
AGGCTCCGCGGACTCACGTTCGGTAGCAGGAAAACGAAGCTGCCGAAGCC
AGGACGTGCAAGGCCTGTGGCCGCGAGCAACCCATCCACGTAGCCTCCCC
TCCCGTGCCTCCCGTCTTTCTCCTTTCTCCGGCACCGACGCACCATGGCG
ACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGAAATTGG
CAACTATCACTACGGGCAAGGTCATCCCATGAAGCCCCACCGCGTCCGCA
TGACCCACTCCCTCGTCGTCTACTATTGGCTTTACCGGAACATGGAAGTC
CTGCGGCCCAAGCCCGTCCTGCTCAGCGAGATGACGCGCTTTCATTCAGA
TGACTATATTAACTTCCTGCGGGTAATAACACCGGACAACATGCAAGAAT
ACATGCGACAACTCCAACGATTCAATGTCGGGGAAGATTGCCCAGTGTTC
GATGGACTTTTTGAGTTCTGCCAGCTGTACACAAGTGGGTCGATTGGGGG
AGCGGCACTGCTGAACCAAAAAGACGCGGACATCGTGATTAATTGGGCAG
GGGGGTTGCATCACGCGAAGAAATCGGAAGCCTCTGGCTTCTGTTACGTC
AACGATTGTGTGCTGGCGATCTTAGAGCTGTTGAAGCACCATCACCGGGT
GCTTTATATAGACATTGACATTCACCATGGGGATGGCGTAGAGGAGGCTT
TCTACACCACCGACCGAGTGATGACTGTTTCGTTTCATAAATTTGGGGAA
TACTTCCCTGGCACGGGCGACGTGAAGGACTCCGGGTATGGTGACGGGAA
GAACTATGCGATCAATTTCCCACTGCACGATGGTATGGACGACGAGAGCT
TTTCGAGTGTCTTTCGGCCGGTTATTGGGAAGGTGATGGAGACTTTTTCG
CCAGGAGCGATCGTGTTGCAGTGCGGGGCCGACAGTTTGTCGGGCGACCG
GTTGGGGTGTTTTAATTTAAGCCTGAAGGGGCACGCGGACGCAGTGGCGT
TCGTGAAGGGTTTTGATGTGCCCGTGTTGGTGCTCGGGGGGGGGGGATAC
ACTCTGCGGAATGTCCCAAGGTGTTGGGCGTATGAAACGAGTGTGTTGCT
GGATACGGAGATCAAGGACGATTTGCCGTTTCATGATTATTTTGAATACT
ACGGCCCCGACTACAAGCTACACCTGCCTGTGTCCAACATGGAAAATCTC
AACACCAAGCCCTACCTCGAGACGATCAAGCAGCAGTTGTTTGACATCCT
ATCCAATGTCTCCCCCACCGGCGCCCAAATCCAGACGGGACAGCCCGGCA
CGAGCATTACCCCCGCGGACTTGGCAGTGCCCATGACAGCCCGTGAGAGG
GAGGAGGAGGCAGAGGACAAGAATCCCGATAGGCGGGGAGGCACGGAAAG
GGAGGGAGGAGGAGGGGAGGGAGGGAGGAAGGAGCATCCGTTGGAGATGA
TGCCAGAGGGGAAGTAGGGTGGGGAGGAAGTATGGAAGGGGGCAAGAAAG
GT

protein sequence of jgi.p|Nanoce1779_2|596863

>mRNA_6942-protein ID=mRNA_6942-protein|Name=jgi.p|Nanoce1779_2|596863|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MATAPTKRRISYFYDAEIGNYHYGQGHPMKPHRVRMTHSLVVYYWLYRNM
EVLRPKPVLLSEMTRFHSDDYINFLRVITPDNMQEYMRQLQRFNVGEDCP
VFDGLFEFCQLYTSGSIGGAALLNQKDADIVINWAGGLHHAKKSEASGFC
YVNDCVLAILELLKHHHRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKF
GEYFPGTGDVKDSGYGDGKNYAINFPLHDGMDDESFSSVFRPVIGKVMET
FSPGAIVLQCGADSLSGDRLGCFNLSLKGHADAVAFVKGFDVPVLVLGGG
GYTLRNVPRCWAYETSVLLDTEIKDDLPFHDYFEYYGPDYKLHLPVSNME
NLNTKPYLETIKQQLFDILSNVSPTGAQIQTGQPGTSITPADLAVPMTAR
EREEEAEDKNPDRRGGTEREGGGGEGGRKEHPLEMMPEGK*

mRNA from alignment at scaffold_17:486863..488928+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6942 ID=mRNA_6942|Name=jgi.p|Nanoce1779_2|596863|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at scaffold_17:486863..488928+ (Nannochloropsis oceanica)
AGGCTCCGCGGACTCACGTTCGGTAGCAGGAAAACGAAGCTGCCGAAGCC
AGGACGTGCAAGGCCTGTGGCCGCGAGCAACCCATCCACGTAGCCTCCCC
TCCCGTGCCTCCCGTCTTTCTCCTTTCTCCGGCACCGACGCACCATGGCG
ACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGAAATTGG
CAACTATCACTACGGGCAAGGTCATCCCATGAAGGTACTTCTGCCAGTGG
AGGCTGTGTGTTTCTCTTGGCTTGAGCCTTCACTTCTGTTCTTTCCCATC
CACACCCTCCCCTTGCCTACTTCCTCCCCTGCCTGGCCATGCTCATATAT
CCATCGGGGACGCCATAATCGTGCGTGTGCAGCATTCAATTTTTATAGCA
CAGCACTCCCAACTCCGTCAATATGAAATCTGCTTGTCCTATCCCTCGCT
GCTTGTCCTATCCCTCGCTCACTCGCCCCCCCTCCCCTCCTTCTCCTCTC
CCGTATCTAGCCCCACCGCGTCCGCATGACCCACTCCCTCGTCGTCTACT
ATTGGCTTTACCGGAACATGGAAGTCCTGCGGCCCAAGCCCGTCCTGCTC
AGCGAGATGACGCGCTTTCATTCAGATGACTATATTAACTTCCTGCGGGT
AATAACACCGGACAACATGCAAGAATACATGCGACAACTCCAACGATTCA
ATGTCGGGGAAGATTGCCCAGTGTTCGATGGACTTTTTGAGTTCTGCCAG
CTGTACACAAGTGGGTCGATTGGGGGAGCGGCACTGCTGAACCAAAAAGA
CGCGGACATCGTGATTAATTGGGCAGGGGGGTTGCATCACGCGAAGAAAT
CGGAAGCCTCTGGCTTCTGTTACGTCAACGATTGTGTGCTGGCGATCTTA
GAGCTGTTGAAGCACCATCACCGGGTGCTTTATATAGACATTGACATTCA
CCATGGGGATGGCGTAGAGGAGGCTTTCTACACCACCGACCGAGTGATGA
CTGTTTCGTTTCATAAATTTGGGGAATACTTCCCTGGCACGGGCGACGTG
AAGGACTCCGGGTATGGTGACGGGAAGAACTATGCGATCAATTTCCCACT
GCACGATGGTATGGACGACGAGAGCTTTTCGAGTGTCTTTCGGCCGGTTA
TTGGGAAGGTGATGGAGACTTTTTCGCCAGGAGCGATCGTGTTGCAGTGC
GGGGCCGACAGTTTGTCGGGCGACCGGTTGGGGTGTTTTAATTTAAGCCT
GAAGGGGCACGCGGACGCAGTGGCGTTCGTGAAGGGTTTTGATGTGCCCG
TGTTGGTGCTCGGGGGGGGGGGATACACTCTGCGGAATGTCCCAAGGTGT
TGGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCAAGGACGATTT
GCCGTTTCATGATTATTTTGAATGTACGTCACAGTAAAGAGAAGGGGGGG
AAGTAGGAAGAGGGAAAATGGATATAGTGTGGCGGATTGTTTGCCTTTTG
GTCCTTGTGAGTTGTGCTTCATTATTTTATATAACGTGACTCATGCAACC
GGAATCCCCTCCCTCCCTCCCTCCCTTACTCACTCCCTCTGCAGACTACG
GCCCCGACTACAAGCTACACCTGCCTGTGTCCAACATGGAAAATCTCAAC
ACCAAGCCCTACCTCGAGACGATCAAGCAGCAGTTGTTTGACATCCTATC
CAATGTCTCCCCCACCGGCGCCCAAATCCAGACGGGACAGCCCGGTACGT
CTCTTCTTTCTTGTTCGTTGGAGTTTTCCCACGAAAGAAAAATGTATTGA
TGTATAGGCATACATAAATATGCATACAACTAAAAGACTACTGATGTCCC
CAAATCGACAGGCACGAGCATTACCCCCGCGGACTTGGCAGTGCCCATGA
CAGCCCGTGAGAGGGAGGAGGAGGCAGAGGACAAGAATCCCGATAGGCGG
GGAGGCACGGAAAGGGAGGGAGGAGGAGGGGAGGGAGGGAGGAAGGAGCA
TCCGTTGGAGATGATGCCAGAGGGGAAGTAGGGTGGGGAGGAAGTATGGA
AGGGGGCAAGAAAGGT

Coding sequence (CDS) from alignment at scaffold_17:486863..488928+

>mRNA_6942 ID=mRNA_6942|Name=jgi.p|Nanoce1779_2|596863|organism=Nannochloropsis oceanica|type=CDS|length=5292bp|location=Sequence derived from alignment at scaffold_17:486863..488928+ (Nannochloropsis oceanica)
ATGGCGACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGA
AATTGGCAACTATCACTACGGGCAAGGTCATCCCATGAAGCCCCACCGCG
TCCGCATGACCCACTCCCTCGTCGTCTACTATTGGCTTTACCGGAACATG
GAAGTCCTGCGGCCCAAGCCCGTCCTGCTCAGCGAGATGACGCGCTTTCA
TTCAGATGACTATATTAACTTCCTGCGGGTAATAACACCGGACAACATGC
AAGAATACATGCGACAACTCCAACGATTCAATGTCGGGGAAGATTGCCCA
GTGTTCGATGGACTTTTTGAGTTCTGCCAGCTGTACACAAGTGGGTCGAT
TGGGGGAGCGGCACTGCTGAACCAAAAAGACGCGGACATCGTGATTAATT
GGGCAGGGGGGTTGCATCACGCGAAGAAATCGGAAGCCTCTGGCTTCTGT
TACGTCAACGATTGTGTGCTGGCGATCTTAGAGCTGTTGAAGCACCATCA
CCGGGTGCTTTATATAGACATTGACATTCACCATGGGGATGGCGTAGAGG
AGGCTTTCTACACCACCGACCGAGTGATGACTGTTTCGTTTCATAAATTT
GGGGAATACTTCCCTGGCACGGGCGACGTGAAGGACTCCGGGTATGGTGA
CGGGAAGAACTATGCGATCAATTTCCCACTGCACGATGGTATGGACGACG
AGAGCTTTTCGAGTGTCTTTCGGCCGGTTATTGGGAAGGTGATGGAGACT
TTTTCGCCAGGAGCGATCGTGTTGCAGTGCGGGGCCGACAGTTTGTCGGG
CGACCGGTTGGGGTGTTTTAATTTAAGCCTGAAGGGGCACGCGGACGCAG
TGGCGTTCGTGAAGGGTTTTGATGTGCCCGTGTTGGTGCTCGGGGGGGGG
GGATACACTCTGCGGAATGTCCCAAGGTGTTGGGCGTATGAAACGAGTGT
GTTGCTGGATACGGAGATCAAGGACGATTTGCCGTTTCATGATTATTTTG
AATACTACGGCCCCGACTACAAGCTACACCTGCCTGTGTCCAACATGGAA
AATCTCAACACCAAGCCCTACCTCGAGACGATCAAGCAGCAGTTGTTTGA
CATCCTATCCAATGTCTCCCCCACCGGCGCCCAAATCCAGACGGGACAGC
CCGGCACGAGCATTACCCCCGCGGACTTGGCAGTGCCCATGACAGCCCGT
GAGAGGGAGGAGGAGGCAGAGGACAAGAATCCCGATAGGCGGGGAGGCAC
GGAAAGGGAGGGAGGAGGAGGGGAGGGAGGGAGGAAGGAGCATCCGTTGG
AGATGATGCCAGAGGGGAAGTAGATGGCGACGGCCCCAACCAAGCGCCGC
ATCTCCTACTTCTACGATGCCGAAATTGGCAACTATCACTACGGGCAAGG
TCATCCCATGAAGCCCCACCGCGTCCGCATGACCCACTCCCTCGTCGTCT
ACTATTGGCTTTACCGGAACATGGAAGTCCTGCGGCCCAAGCCCGTCCTG
CTCAGCGAGATGACGCGCTTTCATTCAGATGACTATATTAACTTCCTGCG
GGTAATAACACCGGACAACATGCAAGAATACATGCGACAACTCCAACGAT
TCAATGTCGGGGAAGATTGCCCAGTGTTCGATGGACTTTTTGAGTTCTGC
CAGCTGTACACAAGTGGGTCGATTGGGGGAGCGGCACTGCTGAACCAAAA
AGACGCGGACATCGTGATTAATTGGGCAGGGGGGTTGCATCACGCGAAGA
AATCGGAAGCCTCTGGCTTCTGTTACGTCAACGATTGTGTGCTGGCGATC
TTAGAGCTGTTGAAGCACCATCACCGGGTGCTTTATATAGACATTGACAT
TCACCATGGGGATGGCGTAGAGGAGGCTTTCTACACCACCGACCGAGTGA
TGACTGTTTCGTTTCATAAATTTGGGGAATACTTCCCTGGCACGGGCGAC
GTGAAGGACTCCGGGTATGGTGACGGGAAGAACTATGCGATCAATTTCCC
ACTGCACGATGGTATGGACGACGAGAGCTTTTCGAGTGTCTTTCGGCCGG
TTATTGGGAAGGTGATGGAGACTTTTTCGCCAGGAGCGATCGTGTTGCAG
TGCGGGGCCGACAGTTTGTCGGGCGACCGGTTGGGGTGTTTTAATTTAAG
CCTGAAGGGGCACGCGGACGCAGTGGCGTTCGTGAAGGGTTTTGATGTGC
CCGTGTTGGTGCTCGGGGGGGGGGGATACACTCTGCGGAATGTCCCAAGG
TGTTGGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCAAGGACGA
TTTGCCGTTTCATGATTATTTTGAATACTACGGCCCCGACTACAAGCTAC
ACCTGCCTGTGTCCAACATGGAAAATCTCAACACCAAGCCCTACCTCGAG
ACGATCAAGCAGCAGTTGTTTGACATCCTATCCAATGTCTCCCCCACCGG
CGCCCAAATCCAGACGGGACAGCCCGGCACGAGCATTACCCCCGCGGACT
TGGCAGTGCCCATGACAGCCCGTGAGAGGGAGGAGGAGGCAGAGGACAAG
AATCCCGATAGGCGGGGAGGCACGGAAAGGGAGGGAGGAGGAGGGGAGGG
AGGGAGGAAGGAGCATCCGTTGGAGATGATGCCAGAGGGGAAGTAGATGG
CGACGGCCCCAACCAAGCGCCGCATCTCCTACTTCTACGATGCCGAAATT
GGCAACTATCACTACGGGCAAGGTCATCCCATGAAGCCCCACCGCGTCCG
CATGACCCACTCCCTCGTCGTCTACTATTGGCTTTACCGGAACATGGAAG
TCCTGCGGCCCAAGCCCGTCCTGCTCAGCGAGATGACGCGCTTTCATTCA
GATGACTATATTAACTTCCTGCGGGTAATAACACCGGACAACATGCAAGA
ATACATGCGACAACTCCAACGATTCAATGTCGGGGAAGATTGCCCAGTGT
TCGATGGACTTTTTGAGTTCTGCCAGCTGTACACAAGTGGGTCGATTGGG
GGAGCGGCACTGCTGAACCAAAAAGACGCGGACATCGTGATTAATTGGGC
AGGGGGGTTGCATCACGCGAAGAAATCGGAAGCCTCTGGCTTCTGTTACG
TCAACGATTGTGTGCTGGCGATCTTAGAGCTGTTGAAGCACCATCACCGG
GTGCTTTATATAGACATTGACATTCACCATGGGGATGGCGTAGAGGAGGC
TTTCTACACCACCGACCGAGTGATGACTGTTTCGTTTCATAAATTTGGGG
AATACTTCCCTGGCACGGGCGACGTGAAGGACTCCGGGTATGGTGACGGG
AAGAACTATGCGATCAATTTCCCACTGCACGATGGTATGGACGACGAGAG
CTTTTCGAGTGTCTTTCGGCCGGTTATTGGGAAGGTGATGGAGACTTTTT
CGCCAGGAGCGATCGTGTTGCAGTGCGGGGCCGACAGTTTGTCGGGCGAC
CGGTTGGGGTGTTTTAATTTAAGCCTGAAGGGGCACGCGGACGCAGTGGC
GTTCGTGAAGGGTTTTGATGTGCCCGTGTTGGTGCTCGGGGGGGGGGGAT
ACACTCTGCGGAATGTCCCAAGGTGTTGGGCGTATGAAACGAGTGTGTTG
CTGGATACGGAGATCAAGGACGATTTGCCGTTTCATGATTATTTTGAATA
CTACGGCCCCGACTACAAGCTACACCTGCCTGTGTCCAACATGGAAAATC
TCAACACCAAGCCCTACCTCGAGACGATCAAGCAGCAGTTGTTTGACATC
CTATCCAATGTCTCCCCCACCGGCGCCCAAATCCAGACGGGACAGCCCGG
CACGAGCATTACCCCCGCGGACTTGGCAGTGCCCATGACAGCCCGTGAGA
GGGAGGAGGAGGCAGAGGACAAGAATCCCGATAGGCGGGGAGGCACGGAA
AGGGAGGGAGGAGGAGGGGAGGGAGGGAGGAAGGAGCATCCGTTGGAGAT
GATGCCAGAGGGGAAGTAGATGGCGACGGCCCCAACCAAGCGCCGCATCT
CCTACTTCTACGATGCCGAAATTGGCAACTATCACTACGGGCAAGGTCAT
CCCATGAAGCCCCACCGCGTCCGCATGACCCACTCCCTCGTCGTCTACTA
TTGGCTTTACCGGAACATGGAAGTCCTGCGGCCCAAGCCCGTCCTGCTCA
GCGAGATGACGCGCTTTCATTCAGATGACTATATTAACTTCCTGCGGGTA
ATAACACCGGACAACATGCAAGAATACATGCGACAACTCCAACGATTCAA
TGTCGGGGAAGATTGCCCAGTGTTCGATGGACTTTTTGAGTTCTGCCAGC
TGTACACAAGTGGGTCGATTGGGGGAGCGGCACTGCTGAACCAAAAAGAC
GCGGACATCGTGATTAATTGGGCAGGGGGGTTGCATCACGCGAAGAAATC
GGAAGCCTCTGGCTTCTGTTACGTCAACGATTGTGTGCTGGCGATCTTAG
AGCTGTTGAAGCACCATCACCGGGTGCTTTATATAGACATTGACATTCAC
CATGGGGATGGCGTAGAGGAGGCTTTCTACACCACCGACCGAGTGATGAC
TGTTTCGTTTCATAAATTTGGGGAATACTTCCCTGGCACGGGCGACGTGA
AGGACTCCGGGTATGGTGACGGGAAGAACTATGCGATCAATTTCCCACTG
CACGATGGTATGGACGACGAGAGCTTTTCGAGTGTCTTTCGGCCGGTTAT
TGGGAAGGTGATGGAGACTTTTTCGCCAGGAGCGATCGTGTTGCAGTGCG
GGGCCGACAGTTTGTCGGGCGACCGGTTGGGGTGTTTTAATTTAAGCCTG
AAGGGGCACGCGGACGCAGTGGCGTTCGTGAAGGGTTTTGATGTGCCCGT
GTTGGTGCTCGGGGGGGGGGGATACACTCTGCGGAATGTCCCAAGGTGTT
GGGCGTATGAAACGAGTGTGTTGCTGGATACGGAGATCAAGGACGATTTG
CCGTTTCATGATTATTTTGAATACTACGGCCCCGACTACAAGCTACACCT
GCCTGTGTCCAACATGGAAAATCTCAACACCAAGCCCTACCTCGAGACGA
TCAAGCAGCAGTTGTTTGACATCCTATCCAATGTCTCCCCCACCGGCGCC
CAAATCCAGACGGGACAGCCCGGCACGAGCATTACCCCCGCGGACTTGGC
AGTGCCCATGACAGCCCGTGAGAGGGAGGAGGAGGCAGAGGACAAGAATC
CCGATAGGCGGGGAGGCACGGAAAGGGAGGGAGGAGGAGGGGAGGGAGGG
AGGAAGGAGCATCCGTTGGAGATGATGCCAGAGGGGAAGTAG

Synonyms

Publications